Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013038.1

Orthogroup ID

OG0010957

Physical Location & Seq

Genomic Coordinates Reverse (-)

88924 .. 89479

Gene Structure 556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013038.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

atggttgtaccaaagatcggaaagttgatttccggtagccaaaatgaggagcgcacccatatacttagtacaaggatcaaggatttggggttgccaagagagcagtatgaatggtacttggatcttcgcaggcatggaactgtcaagcactctggcttcagtcttgagtttgatcttatggttctctttgccactggccttactgatgtaagagatgctatcccctttcccagaagttatggcaaagcaaactactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004816 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006421 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2

Protein Analysis

85

Amino Acids

9.78

Weight (kDa)

9.1

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07420 AT3G07420
fragaria_vesca	FvH4_2g17960
malus_domestica	MD05G1163500.v1.1 MD10G1153300.v1.1
prunus_persica	Prupe.8G192100_v2.0.a1
pyrus_communis	pycom05g15290 pycom10g13220
rosa_chinensis	RchiOBHm_Chr6g0283201
rosa_laevigata	RLG00000012837
rosa_multiflora	Rmu_sc0006459.1_g000001 Rmu_sc0013038.1_g000019
rosa_roxburghii	Rroxscaffold_2G00106680 Rroxscaffold_7G00185650
rosa_rugosa	Rorug06G0152600
rosa_samantha	Rh6AG265000 Rh6BG267900 Rh6CG267100 Rh6DG260300
rosa_wichuraiana	Rw6G022970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	83, 129
AcuI	CTGAAG	1 cut(s)	142
AfaI	GTAC	3 cut(s)	9, 70, 116
AfiI	CCNNNNNNNGG	2 cut(s)	17, 46
AlwI	GGATC	2 cut(s)	83, 129
AoxI	GGCC	1 cut(s)	196
AspLEI	GCGC	1 cut(s)	54
BfaI	CTAG	1 cut(s)	256
BmsI	GCATC	1 cut(s)	205
BpuEI	CTTGAG	1 cut(s)	185
BsaWI	WCCGGW	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 46
Bse1I	ACTGG	1 cut(s)	199
BseLI	CCNNNNNNNGG	2 cut(s)	17, 46
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	1 cut(s)	62
BshFI	GGCC	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	2 cut(s)	17, 46
BsnI	GGCC	1 cut(s)	198
Bsp143I	GATC	4 cut(s)	15, 75, 121, 172
BspANI	GGCC	1 cut(s)	198
BspPI	GGATC	2 cut(s)	83, 129
BsrI	ACTGG	1 cut(s)	199
BssMI	GATC	4 cut(s)	15, 75, 121, 172
Bst4CI	ACNGT	1 cut(s)	142
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	4 cut(s)	18, 78, 124, 175
BstMBI	GATC	4 cut(s)	15, 75, 121, 172
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	131
CfoI	GCGC	1 cut(s)	54
Csp6I	GTAC	3 cut(s)	8, 69, 115
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	3 cut(s)	39, 156, 198
CviKI_1	RGCY	3 cut(s)	39, 156, 198
CviQI	GTAC	3 cut(s)	8, 69, 115
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	4 cut(s)	17, 77, 123, 174
DpnII	GATC	4 cut(s)	15, 75, 121, 172
Eco57I	CTGAAG	1 cut(s)	142
FaeI	CATG	1 cut(s)	137
FaiI	YATR	6 cut(s)	60, 62, 108, 135, 179, 240
FatI	CATG	1 cut(s)	133
FspBI	CTAG	1 cut(s)	256
GlaI	GCGC	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	1 cut(s)	33
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	137
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HpaII	CCGG	1 cut(s)	33
Hpy188I	TCNGA	1 cut(s)	20
Hpy188III	TCNNGA	1 cut(s)	164
HpyCH4III	ACNGT	1 cut(s)	142
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	1 cut(s)	65
Hsp92II	CATG	1 cut(s)	137
HspAI	GCGC	1 cut(s)	52
Kzo9I	GATC	4 cut(s)	15, 75, 121, 172
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	5 cut(s)	46, 115, 138, 180, 244
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	256
MalI	GATC	4 cut(s)	17, 77, 123, 174
MboI	GATC	4 cut(s)	15, 75, 121, 172
MboII	GAAGA	1 cut(s)	116
MflI	RGATCY	1 cut(s)	121
MnlI	CCTC	1 cut(s)	40
MspI	CCGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	100
NdeII	GATC	4 cut(s)	15, 75, 121, 172
NlaIII	CATG	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	3 cut(s)	9, 70, 116
RsaNI	GTAC	3 cut(s)	8, 69, 115
Sau3AI	GATC	4 cut(s)	15, 75, 121, 172
SfaNI	GCATC	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SspMI	CTAG	1 cut(s)	256
TaaI	ACNGT	1 cut(s)	142
TatI	WGTACW	1 cut(s)	68
TscAI	CASTG	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	123
TspRI	CASTG	1 cut(s)	199
XspI	CTAG	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.