Rmu_sc0006697.1_g000003

Protein PLANT CADMIUM RESISTANCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006697.1
OG0016636
Physical Location & Seq
Forward (+)
3734 .. 4533
800 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 444 bp
atgtactctagcatggccgaattgcagaacgagccactcccttcggccccatcggcgccacccccaagtcctcggattacaccaccatcatcagcaccacctcttacttttgatttgaatgatcagccgccggtgacccttcctcattgcccagccccttggtccactgacctatgcgattgttgtgacgatctcagcagttgtaagtccgatcatatactgagagggcagtacttcttggaggagaagccatgcgcagattgctgcgtccatttttgctgcgaggtatgcgctctgtgccaagagtatcgacaccttcagaaccagggtttcgacatgtccataggttggtatggcaacgtccacaagcagagacgactagccgcaatgctgccaccgccggctataatgcctccacaacttcagaccggcatgaaccgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

147

Amino Acids

16.31

Weight (kDa)

5.16

Isoelectric Point (pI)

82.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 74 - 105 2.9e-09 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016636)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68610
fragaria_vesca FvH4_4g27720
malus_domestica MD16G1045800.v1.1
prunus_persica Prupe.1G307600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0435581
rosa_laevigata RLG00000006580
rosa_multiflora Rmu_sc0006697.1_g000003
rosa_roxburghii Rroxscaffold_5G00376810
rosa_rugosa Rorug04G0286800.1
rosa_samantha Rh4AG342200 Rh4BG350400 Rh4CG365100 Rh4DG344700
rosa_wichuraiana Rw4G029850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 256
AccB1I GGYRCC 1 cut(s) 55
AccB7I CCANNNNNTGG 1 cut(s) 348
AciI CCGC 3 cut(s) 128, 384, 398
AcoI YGGCCR 1 cut(s) 15
AcuI CTGAAG 2 cut(s) 302, 407
AcyI GRCGYC 1 cut(s) 56
AfaI GTAC 2 cut(s) 5, 233
AfiI CCNNNNNNNGG 1 cut(s) 348
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 1 cut(s) 118
AjnI CCWGG 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 367
AoxI GGCC 2 cut(s) 15, 45
ApeKI GCWGC 3 cut(s) 264, 279, 391
AspLEI GCGC 3 cut(s) 58, 257, 293
AspS9I GGNCC 2 cut(s) 46, 162
AsuHPI GGTGA 1 cut(s) 145
AvaII GGWCC 1 cut(s) 162
BanI GGYRCC 1 cut(s) 55
BbvI GCAGC 3 cut(s) 251, 266, 378
BccI CCATC 2 cut(s) 58, 94
BciT130I CCWGG 1 cut(s) 326
BclI TGATCA 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 367
BfaI CTAG 2 cut(s) 9, 380
BfoI RGCGCY 1 cut(s) 59
BglI GCCNNNNNGGC 1 cut(s) 53
BisI GCNGC 5 cut(s) 128, 265, 280, 384, 392
BlsI GCNGC 5 cut(s) 129, 266, 281, 385, 393
BmcAI AGTACT 1 cut(s) 233
Bme1390I CCNGG 1 cut(s) 326
Bme18I GGWCC 1 cut(s) 162
BmgT120I GGNCC 2 cut(s) 46, 162
BmiI GGNNCC 2 cut(s) 48, 57
BmrFI CCNGG 1 cut(s) 326
BsaHI GRCGYC 1 cut(s) 56
BsaJI CCNNGG 3 cut(s) 71, 158, 325
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse118I RCCGGY 3 cut(s) 130, 400, 428
Bse3DI GCAATG 2 cut(s) 145, 393
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 3 cut(s) 71, 158, 325
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMI GCAATG 2 cut(s) 145, 393
BseMII CTCAG 2 cut(s) 208, 212
BseRI GAGGAG 1 cut(s) 257
BseXI GCAGC 3 cut(s) 251, 266, 378
BseYI CCCAGC 1 cut(s) 151
BshFI GGCC 2 cut(s) 17, 47
BshNI GGYRCC 1 cut(s) 55
BsiSI CCGG 3 cut(s) 131, 401, 429
BslI CCNNNNNNNGG 1 cut(s) 348
BsmAI GTCTC 1 cut(s) 367
BsmBI CGTCTC 1 cut(s) 367
BsnI GGCC 2 cut(s) 17, 47
Bsp143I GATC 3 cut(s) 121, 190, 211
BspACI CCGC 3 cut(s) 128, 384, 398
BspANI GGCC 2 cut(s) 17, 47
BspCNI CTCAG 2 cut(s) 207, 213
BspLI GGNNCC 2 cut(s) 48, 57
BspT107I GGYRCC 1 cut(s) 55
BsrDI GCAATG 2 cut(s) 145, 393
BsrFI RCCGGY 3 cut(s) 130, 400, 428
BssAI RCCGGY 3 cut(s) 130, 400, 428
BssECI CCNNGG 3 cut(s) 71, 158, 325
BssMI GATC 3 cut(s) 121, 190, 211
BssNI GRCGYC 1 cut(s) 56
BssT1I CCWWGG 1 cut(s) 158
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 1 cut(s) 440
BstACI GRCGYC 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 402
BstDEI CTNAG 2 cut(s) 194, 221
BstEII GGTNACC 1 cut(s) 133
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 3 cut(s) 58, 257, 293
BstKTI GATC 3 cut(s) 124, 193, 214
BstMAI GTCTC 1 cut(s) 367
BstMBI GATC 3 cut(s) 121, 190, 211
BstMWI GCNNNNNNNGC 6 cut(s) 31, 53, 261, 288, 297, 397
BstNI CCWGG 1 cut(s) 326
BstNSI RCATGY 1 cut(s) 340
BstPI GGTNACC 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 324
BstV1I GCAGC 3 cut(s) 251, 266, 378
BstXI CCANNNNNNTGG 1 cut(s) 159
BsuRI GGCC 2 cut(s) 17, 47
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 402
CfoI GCGC 3 cut(s) 58, 257, 293
Cfr10I RCCGGY 3 cut(s) 130, 400, 428
Cfr13I GGNCC 2 cut(s) 46, 162
CseI GACGC 1 cut(s) 256
Csp6I GTAC 2 cut(s) 4, 232
CviAII CATG 4 cut(s) 13, 252, 337, 433
CviJI RGCY 8 cut(s) 17, 34, 47, 127, 155, 250, 383, 404
CviKI_1 RGCY 8 cut(s) 17, 34, 47, 127, 155, 250, 383, 404
CviQI GTAC 2 cut(s) 4, 232
DdeI CTNAG 2 cut(s) 194, 221
DinI GGCGCC 1 cut(s) 57
DpnI GATC 3 cut(s) 123, 192, 213
DpnII GATC 3 cut(s) 121, 190, 211
EaeI YGGCCR 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 162
Eco57I CTGAAG 2 cut(s) 302, 407
Eco91I GGTNACC 1 cut(s) 133
EcoO65I GGTNACC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 158
EgeI GGCGCC 1 cut(s) 57
EheI GGCGCC 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 158
Esp3I CGTCTC 1 cut(s) 367
FaeI CATG 4 cut(s) 16, 255, 340, 436
FatI CATG 4 cut(s) 12, 251, 336, 432
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 5 cut(s) 128, 265, 280, 384, 392
Fsp4HI GCNGC 5 cut(s) 128, 265, 280, 384, 392
FspBI CTAG 2 cut(s) 9, 380
FspI TGCGCA 1 cut(s) 256
GlaI GCGC 3 cut(s) 57, 256, 292
GluI GCNGC 5 cut(s) 128, 265, 280, 384, 392
GsaI CCCAGC 1 cut(s) 155
HaeII RGCGCY 1 cut(s) 59
HaeIII GGCC 2 cut(s) 17, 47
HapII CCGG 3 cut(s) 131, 401, 429
HgaI GACGC 1 cut(s) 256
HhaI GCGC 3 cut(s) 58, 257, 293
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 4 cut(s) 16, 255, 340, 436
Hin6I GCGC 3 cut(s) 56, 255, 291
HinP1I GCGC 3 cut(s) 56, 255, 291
HpaII CCGG 3 cut(s) 131, 401, 429
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 2 cut(s) 165, 364
Hpy188I TCNGA 4 cut(s) 75, 211, 321, 426
Hpy8I GTNNAC 2 cut(s) 165, 364
HpyAV CCTTC 3 cut(s) 51, 149, 326
HpyCH4III ACNGT 1 cut(s) 440
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 6 cut(s) 31, 53, 261, 288, 297, 397
HpyF3I CTNAG 2 cut(s) 194, 221
HpySE526I ACGT 1 cut(s) 360
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 4 cut(s) 16, 255, 340, 436
HspAI GCGC 3 cut(s) 56, 255, 291
KasI GGCGCC 1 cut(s) 55
KroI GCCGGC 1 cut(s) 400
KroNI GCCGGC 1 cut(s) 402
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 3 cut(s) 121, 190, 211
LpnPI CCDG 5 cut(s) 144, 165, 311, 338, 414
Lsp1109I GCAGC 3 cut(s) 251, 266, 378
MaeI CTAG 2 cut(s) 9, 380
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 2 cut(s) 133, 185
MalI GATC 3 cut(s) 123, 192, 213
MboI GATC 3 cut(s) 121, 190, 211
MluCI AATT 1 cut(s) 20
Mly113I GGCGCC 1 cut(s) 56
MnlI CCTC 7 cut(s) 81, 111, 153, 218, 235, 277, 423
MroNI GCCGGC 1 cut(s) 400
MspI CCGG 3 cut(s) 131, 401, 429
MspR9I CCNGG 1 cut(s) 326
MvaI CCWGG 1 cut(s) 326
MwoI GCNNNNNNNGC 6 cut(s) 31, 53, 261, 288, 297, 397
NaeI GCCGGC 1 cut(s) 402
NarI GGCGCC 1 cut(s) 56
NdeII GATC 3 cut(s) 121, 190, 211
NgoMIV GCCGGC 1 cut(s) 400
NlaIII CATG 4 cut(s) 16, 255, 340, 436
NlaIV GGNNCC 2 cut(s) 48, 57
NmuCI GTSAC 2 cut(s) 133, 185
NsbI TGCGCA 1 cut(s) 256
NspI RCATGY 1 cut(s) 340
PciI ACATGT 1 cut(s) 336
PdiI GCCGGC 1 cut(s) 402
PflMI CCANNNNNTGG 1 cut(s) 348
PkrI GCNGC 5 cut(s) 129, 266, 281, 385, 393
PluTI GGCGCC 1 cut(s) 59
PscI ACATGT 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 324
PspEI GGTNACC 1 cut(s) 133
PspFI CCCAGC 1 cut(s) 151
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 2 cut(s) 48, 57
PspPI GGNCC 2 cut(s) 46, 162
RsaI GTAC 2 cut(s) 5, 233
RsaNI GTAC 2 cut(s) 4, 232
SatI GCNGC 5 cut(s) 128, 265, 280, 384, 392
Sau3AI GATC 3 cut(s) 121, 190, 211
Sau96I GGNCC 2 cut(s) 46, 162
ScaI AGTACT 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 326
SetI ASST 6 cut(s) 103, 174, 288, 318, 349, 363
SfoI GGCGCC 1 cut(s) 57
SgrAI CRCCGGYG 1 cut(s) 130
SinI GGWCC 1 cut(s) 162
Sse9I AATT 1 cut(s) 20
SsiI CCGC 3 cut(s) 128, 384, 398
SspDI GGCGCC 1 cut(s) 55
SspMI CTAG 2 cut(s) 9, 380
StyD4I CCNGG 1 cut(s) 324
StyI CCWWGG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 440
TaiI ACGT 1 cut(s) 363
TaqI TCGA 2 cut(s) 310, 333
TasI AATT 1 cut(s) 20
TatI WGTACW 2 cut(s) 3, 231
TauI GCSGC 2 cut(s) 130, 386
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 2 cut(s) 133, 185
TseI GCWGC 3 cut(s) 264, 279, 391
Tsp45I GTSAC 2 cut(s) 133, 185
TspRI CASTG 1 cut(s) 172
Van91I CCANNNNNTGG 1 cut(s) 348
VpaK11BI GGWCC 1 cut(s) 162
XceI RCATGY 1 cut(s) 340
XspI CTAG 2 cut(s) 9, 380
ZrmI AGTACT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.