Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006904.1

Orthogroup ID

OG0016967

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2006

Gene Structure 2006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

acaattcccaaaacattcaaggcccagaagaaaaagtcagttgtagtgggaaagagaaagcgagctacagatgcagaggaagaggaaggagaaaagtctgaaaaaccagctggaagatcttgggtgtgggagcacttcaaaaagatcgacaagcctatatttgaggtcacggatggtaagaagattcaaatttctgttatacagcgagctaaatgtaattattgcaggactgatcttgcatgtgatagctacgggaatgggactacatacctccctgcaattactgaatcaattgctcaagctttagaggccaaatccccatctgaagccatctctattatttactgtgttcttgaaaacccgccatcttcttctgcagctctacaaataaagggacatgctataacaaattttttggatctccttaggcatgaaaagcgagcagaggatctctgtaaccttctcacccagctgaggcctttcttcaacttgattccaaaggcaaagactgcaaacactgtccgtggcattattgatgcagtagctgaagtaccaggcacatctgatcttcagatttccctttgcaaggaaatggtgctgcggacctgcttgatcaaggaagtgagaaggcttgatgacaagcttcttcttgttgatcaggggcggatccaggattccaccttcggtggggcttggatttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030054 GO:0030154 GO:0030163 GO:0032502 GO:0032991 GO:0034622 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048863 GO:0048869 GO:0050896 GO:0051603 GO:0055044 GO:0065003 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

234

Amino Acids

26.06

Weight (kDa)

8.89

Isoelectric Point (pI)

37.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN6_N	PF18055	99 - 199	3.5e-20	26S proteasome regulatory subunit RPN6 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016967)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g05860
rosa_chinensis	RchiOBHm_Chr6g0255441
rosa_laevigata	RLG00000020288
rosa_multiflora	Rmu_co8401755.1_g000001 Rmu_sc0002360.1_g000011 Rmu_sc0006904.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353690
rosa_rugosa	Rorug02G0166000 Rorug05G0316600 Rorug05G0475100 Rorug05G0558700
rosa_samantha	Rh6AG075000 Rh6BG068700 Rh6BG069300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	614
AciI	CCGC	3 cut(s)	362, 601, 664
AclWI	GGATC	4 cut(s)	426, 456, 661, 674
AcsI	RAATTY	2 cut(s)	189, 409
AcuI	CTGAAG	3 cut(s)	345, 554, 567
AfaI	GTAC	1 cut(s)	552
AfiI	CCNNNNNNNGG	3 cut(s)	474, 586, 687
AgsI	TTSAA	5 cut(s)	19, 139, 188, 356, 487
AjnI	CCWGG	2 cut(s)	553, 669
AluBI	AGCT	9 cut(s)	65, 110, 209, 249, 302, 380, 472, 545, 643
AluI	AGCT	9 cut(s)	65, 110, 209, 249, 302, 380, 472, 545, 643
Alw21I	GWGCWC	1 cut(s)	135
AlwI	GGATC	4 cut(s)	426, 456, 661, 674
AlwNI	CAGNNNCTG	1 cut(s)	545
AoxI	GGCC	3 cut(s)	21, 309, 476
ApeKI	GCWGC	2 cut(s)	377, 598
ApoI	RAATTY	2 cut(s)	189, 409
AspS9I	GGNCC	2 cut(s)	22, 603
AsuHPI	GGTGA	1 cut(s)	457
AvaII	GGWCC	1 cut(s)	603
AxyI	CCTNAGG	1 cut(s)	425
BamHI	GGATCC	1 cut(s)	666
Bbv12I	GWGCWC	1 cut(s)	135
BbvCI	CCTCAGC	1 cut(s)	473
BbvI	GCAGC	2 cut(s)	389, 585
BccI	CCATC	4 cut(s)	167, 328, 338, 373
BciT130I	CCWGG	2 cut(s)	555, 671
BclI	TGATCA	2 cut(s)	612, 655
BfmI	CTRYAG	2 cut(s)	66, 375
BfuAI	ACCTGC	1 cut(s)	614
BglII	AGATCT	1 cut(s)	116
BisI	GCNGC	2 cut(s)	378, 599
BlsI	GCNGC	2 cut(s)	379, 600
Bme1390I	CCNGG	2 cut(s)	555, 671
Bme18I	GGWCC	1 cut(s)	603
BmgT120I	GGNCC	2 cut(s)	22, 603
BmiI	GGNNCC	1 cut(s)	668
BmrFI	CCNGG	2 cut(s)	555, 671
BmsI	GCATC	2 cut(s)	61, 526
Bpu10I	CCTNAGC	1 cut(s)	473
BpuEI	CTTGAG	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	523
Bsc4I	CCNNNNNNNGG	3 cut(s)	474, 586, 687
Bse21I	CCTNAGG	1 cut(s)	425
BseBI	CCWGG	2 cut(s)	555, 671
BseDI	CCNNGG	1 cut(s)	523
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	3 cut(s)	474, 586, 687
BseMII	CTCAG	1 cut(s)	464
BseXI	GCAGC	2 cut(s)	389, 585
BseYI	CCCAGC	1 cut(s)	468
BshFI	GGCC	3 cut(s)	23, 311, 478
BsiHKAI	GWGCWC	1 cut(s)	135
BslFI	GGGAC	2 cut(s)	274, 408
BslI	CCNNNNNNNGG	3 cut(s)	474, 586, 687
BsmFI	GGGAC	2 cut(s)	274, 408
BsnI	GGCC	3 cut(s)	23, 311, 478
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	9 cut(s)	116, 144, 232, 418, 448, 565, 612, 655, 666
BspACI	CCGC	3 cut(s)	362, 601, 664
BspANI	GGCC	3 cut(s)	23, 311, 478
BspCNI	CTCAG	1 cut(s)	465
BspLI	GGNNCC	1 cut(s)	668
BspMAI	CTGCAG	1 cut(s)	379
BspMI	ACCTGC	1 cut(s)	614
BspPI	GGATC	4 cut(s)	426, 456, 661, 674
BssECI	CCNNGG	1 cut(s)	523
BssMI	GATC	9 cut(s)	116, 144, 232, 418, 448, 565, 612, 655, 666
Bst2UI	CCWGG	2 cut(s)	555, 671
Bst4CI	ACNGT	2 cut(s)	347, 520
Bst6I	CTCTTC	1 cut(s)	75
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstC8I	GCNNGC	3 cut(s)	63, 207, 441
BstDEI	CTNAG	2 cut(s)	425, 473
BstDSI	CCRYGG	1 cut(s)	523
BstENI	CCTNNNNNAGG	1 cut(s)	584
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	9 cut(s)	119, 147, 235, 421, 451, 568, 615, 658, 669
BstMBI	GATC	9 cut(s)	116, 144, 232, 418, 448, 565, 612, 655, 666
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 308, 436, 509
BstNI	CCWGG	2 cut(s)	555, 671
BstNSI	RCATGY	2 cut(s)	243, 401
BstSCI	CCNGG	2 cut(s)	553, 669
BstSFI	CTRYAG	2 cut(s)	66, 375
BstV1I	GCAGC	2 cut(s)	389, 585
BstX2I	RGATCY	4 cut(s)	116, 418, 448, 666
BstYI	RGATCY	4 cut(s)	116, 418, 448, 666
Bsu36I	CCTNAGG	1 cut(s)	425
BsuRI	GGCC	3 cut(s)	23, 311, 478
BtgI	CCRYGG	1 cut(s)	523
BtsCI	GGATG	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	516
BveI	ACCTGC	1 cut(s)	614
Cac8I	GCNNGC	3 cut(s)	63, 207, 441
CaiI	CAGNNNCTG	1 cut(s)	545
Cfr13I	GGNCC	2 cut(s)	22, 603
Csp6I	GTAC	1 cut(s)	551
CviAII	CATG	3 cut(s)	240, 398, 431
CviQI	GTAC	1 cut(s)	551
DdeI	CTNAG	2 cut(s)	425, 473
DpnI	GATC	9 cut(s)	118, 146, 234, 420, 450, 567, 614, 657, 668
DpnII	GATC	9 cut(s)	116, 144, 232, 418, 448, 565, 612, 655, 666
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
EciI	GGCGGA	1 cut(s)	679
Eco147I	AGGCCT	1 cut(s)	478
Eco47I	GGWCC	1 cut(s)	603
Eco57I	CTGAAG	3 cut(s)	345, 554, 567
Eco81I	CCTNAGG	1 cut(s)	425
EcoNI	CCTNNNNNAGG	1 cut(s)	584
EcoRII	CCWGG	2 cut(s)	553, 669
FaeI	CATG	3 cut(s)	243, 401, 434
FaiI	YATR	7 cut(s)	158, 200, 241, 268, 399, 404, 432
FaqI	GGGAC	2 cut(s)	274, 408
FatI	CATG	3 cut(s)	239, 397, 430
FauI	CCCGC	1 cut(s)	369
FbaI	TGATCA	2 cut(s)	612, 655
Fnu4HI	GCNGC	2 cut(s)	378, 599
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	2 cut(s)	378, 599
GluI	GCNGC	2 cut(s)	378, 599
GsaI	CCCAGC	1 cut(s)	472
HaeIII	GGCC	3 cut(s)	23, 311, 478
Hin1II	CATG	3 cut(s)	243, 401, 434
HindIII	AAGCTT	2 cut(s)	300, 641
HinfI	GANTC	4 cut(s)	184, 287, 493, 674
HphI	GGTGA	1 cut(s)	457
Hpy188I	TCNGA	4 cut(s)	100, 325, 565, 573
Hpy188III	TCNNGA	1 cut(s)	353
HpyAV	CCTTC	4 cut(s)	80, 470, 621, 691
HpyCH4III	ACNGT	2 cut(s)	347, 520
HpyCH4V	TGCA	8 cut(s)	74, 225, 239, 278, 377, 512, 539, 585
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 308, 436, 509
HpyF3I	CTNAG	2 cut(s)	425, 473
Hsp92II	CATG	3 cut(s)	243, 401, 434
Ksp22I	TGATCA	2 cut(s)	612, 655
Kzo9I	GATC	9 cut(s)	116, 144, 232, 418, 448, 565, 612, 655, 666
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	2 cut(s)	389, 585
LweI	GCATC	2 cut(s)	61, 526
MaeIII	GTNAC	2 cut(s)	166, 455
MalI	GATC	9 cut(s)	118, 146, 234, 420, 450, 567, 614, 657, 668
MboI	GATC	9 cut(s)	116, 144, 232, 418, 448, 565, 612, 655, 666
MboII	GAAGA	9 cut(s)	40, 92, 126, 193, 360, 363, 475, 560, 638
MfeI	CAATTG	1 cut(s)	291
MflI	RGATCY	4 cut(s)	116, 418, 448, 666
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	6 cut(s)	3, 189, 217, 279, 291, 409
MnlI	CCTC	7 cut(s)	70, 76, 157, 281, 301, 439, 468
MseI	TTAA	1 cut(s)	703
MspA1I	CMGCKG	2 cut(s)	110, 472
MspR9I	CCNGG	2 cut(s)	555, 671
MunI	CAATTG	1 cut(s)	291
MvaI	CCWGG	2 cut(s)	555, 671
MwoI	GCNNNNNNNGC	4 cut(s)	71, 308, 436, 509
NdeII	GATC	9 cut(s)	116, 144, 232, 418, 448, 565, 612, 655, 666
NlaIII	CATG	3 cut(s)	243, 401, 434
NlaIV	GGNNCC	1 cut(s)	668
NmuCI	GTSAC	1 cut(s)	166
NspI	RCATGY	2 cut(s)	243, 401
PceI	AGGCCT	1 cut(s)	478
PfeI	GAWTC	4 cut(s)	184, 287, 493, 674
PfoI	TCCNGGA	1 cut(s)	669
PkrI	GCNGC	2 cut(s)	379, 600
Psp6I	CCWGG	2 cut(s)	553, 669
PspFI	CCCAGC	1 cut(s)	468
PspGI	CCWGG	2 cut(s)	553, 669
PspN4I	GGNNCC	1 cut(s)	668
PspPI	GGNCC	2 cut(s)	22, 603
PstI	CTGCAG	1 cut(s)	379
PstNI	CAGNNNCTG	1 cut(s)	545
PsuI	RGATCY	4 cut(s)	116, 418, 448, 666
PvuII	CAGCTG	2 cut(s)	110, 472
RsaI	GTAC	1 cut(s)	552
RsaNI	GTAC	1 cut(s)	551
SaqAI	TTAA	1 cut(s)	703
SatI	GCNGC	2 cut(s)	378, 599
Sau3AI	GATC	9 cut(s)	116, 144, 232, 418, 448, 565, 612, 655, 666
Sau96I	GGNCC	2 cut(s)	22, 603
ScrFI	CCNGG	2 cut(s)	555, 671
SduI	GDGCHC	1 cut(s)	135
SfaNI	GCATC	2 cut(s)	61, 526
SfcI	CTRYAG	2 cut(s)	66, 375
SinI	GGWCC	1 cut(s)	603
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
Sse9I	AATT	6 cut(s)	3, 189, 217, 279, 291, 409
SseBI	AGGCCT	1 cut(s)	478
SsiI	CCGC	3 cut(s)	362, 601, 664
StuI	AGGCCT	1 cut(s)	478
StyD4I	CCNGG	2 cut(s)	553, 669
TaaI	ACNGT	2 cut(s)	347, 520
TaqI	TCGA	1 cut(s)	147
TasI	AATT	6 cut(s)	3, 189, 217, 279, 291, 409
TfiI	GAWTC	4 cut(s)	184, 287, 493, 674
Tru1I	TTAA	1 cut(s)	703
Tru9I	TTAA	1 cut(s)	703
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	2 cut(s)	377, 598
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	1 cut(s)	447
TspGWI	ACGGA	2 cut(s)	185, 512
TspRI	CASTG	1 cut(s)	523
VpaK11BI	GGWCC	1 cut(s)	603
XagI	CCTNNNNNAGG	1 cut(s)	584
XapI	RAATTY	2 cut(s)	189, 409
XceI	RCATGY	2 cut(s)	243, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.