Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006915.1

Orthogroup ID

OG0012283

Physical Location & Seq

Genomic Coordinates Forward (+)

13862 .. 16486

Gene Structure 2625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atggggttaccgatccgaaccgcactgaaaaaacggttcggcaacagcacagaactaaaacggccaaccggaaaaaaaagtttggttgcagtttgggcctcaaaccgaaccgaaccgaaccgcaccgcccaccccacctttaacgacagagaactcgccggccgcccccaaaatgcctctgcgtcactccagagatcgtcaacactgatttccaaaaccaagtctactgatgccgtcagctcagtgatagctgatgggtctgtagtggatggcgagaagaataaggaagagccggactacttctcggaagcttcaaaacgcagcgtttcagggttacaggataagctccgtactaagtttctgtatctgcttgagaggcttatggagaataaggatttggaatggagtttgggtagtagtggcattgatttggggcagcagttgatggatctgcaggatgcgtttccggaagttgctgatcggaagttgaaagataggacagagtatttgaataacaagaaaacctcctcttctccttcctcaacatcgccttgtgccaatctcagagctgcttaccacaactgcttcaacaggtggtattcagagaagtttgtaaagggtaattgggacaaagaggaatgcgtttcagagtgggagaaatacaaagcttgtctttcggaacatttggaagataaacaactgagtcggttcttggaggctgaagcacctgtgagcaccaccactgcaaccaaagccgatggcgggcggtcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098796 GO:0098827 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0203

Protein Analysis

257

Amino Acids

28.8

Weight (kDa)

8.9

Isoelectric Point (pI)

52.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UPF0203	PF05254	180 - 240	5.3e-22	Uncharacterised protein family (UPF0203)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33100
fragaria_vesca	FvH4_2g31430
malus_domestica	MD08G1066900.v1.1 MD08G1067500.v1.1 MD09G1070200.v1.1
prunus_persica	Prupe.1G407800_v2.0.a1
pyrus_communis	pycom08g05610
rosa_chinensis	RchiOBHm_Chr6g0311391 RchiOBHm_Chr7g0222241
rosa_multiflora	Rmu_sc0006915.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157660
rosa_rugosa	Rorug06G0388400
rosa_samantha	Rh6AG502900 Rh6BG513400 Rh6CG519300 Rh6DG505500 Rh7AG348300 Rh7CG365900
rosa_wichuraiana	Rw6G043790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	224
AccIII	TCCGGA	1 cut(s)	466
AciI	CCGC	6 cut(s)	21, 121, 126, 163, 762, 766
AclWI	GGATC	2 cut(s)	7, 456
AcoI	YGGCCR	2 cut(s)	62, 160
AcuI	CTGAAG	1 cut(s)	741
AfaI	GTAC	1 cut(s)	352
AfiI	CCNNNNNNNGG	1 cut(s)	762
AgsI	TTSAA	4 cut(s)	315, 490, 511, 589
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AluBI	AGCT	6 cut(s)	240, 251, 311, 346, 569, 668
AluI	AGCT	6 cut(s)	240, 251, 311, 346, 569, 668
Alw21I	GWGCWC	1 cut(s)	737
AlwI	GGATC	2 cut(s)	7, 456
Aor13HI	TCCGGA	1 cut(s)	466
AoxI	GGCC	3 cut(s)	62, 96, 160
ApeKI	GCWGC	3 cut(s)	321, 436, 569
ArsI	GACNNNNNNTTYG	2 cut(s)	490, 522
AspS9I	GGNCC	2 cut(s)	96, 768
AvaII	GGWCC	1 cut(s)	768
Bbv12I	GWGCWC	1 cut(s)	737
BbvI	GCAGC	3 cut(s)	333, 448, 556
BccI	CCATC	4 cut(s)	248, 263, 439, 752
BceAI	ACGGC	2 cut(s)	77, 218
BfmI	CTRYAG	2 cut(s)	261, 452
BisI	GCNGC	4 cut(s)	163, 322, 437, 570
BlsI	GCNGC	4 cut(s)	164, 323, 438, 571
Bme18I	GGWCC	1 cut(s)	768
BmgT120I	GGNCC	2 cut(s)	96, 768
BmsI	GCATC	2 cut(s)	220, 448
BpmI	CTGGAG	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	392
BsaWI	WCCGGW	2 cut(s)	68, 466
BsaXI	ACNNNNNCTCC	2 cut(s)	397, 427
Bsc4I	CCNNNNNNNGG	1 cut(s)	762
Bse118I	RCCGGY	1 cut(s)	158
BseAI	TCCGGA	1 cut(s)	466
BseGI	GGATG	2 cut(s)	274, 463
BseLI	CCNNNNNNNGG	1 cut(s)	762
BseMII	CTCAG	3 cut(s)	255, 577, 692
BseRI	GAGGAG	1 cut(s)	517
BseX3I	CGGCCG	1 cut(s)	160
BseXI	GCAGC	3 cut(s)	333, 448, 556
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	3 cut(s)	64, 98, 162
BsiEI	CGRYCG	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	737
BsiSI	CCGG	4 cut(s)	69, 159, 293, 467
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	1 cut(s)	762
BsmFI	GGGAC	1 cut(s)	641
BsmI	GAATGC	1 cut(s)	644
BsnI	GGCC	3 cut(s)	64, 98, 162
Bsp1286I	GDGCHC	1 cut(s)	737
Bsp13I	TCCGGA	1 cut(s)	466
Bsp143I	GATC	4 cut(s)	12, 194, 448, 478
BspACI	CCGC	6 cut(s)	21, 121, 126, 163, 762, 766
BspANI	GGCC	3 cut(s)	64, 98, 162
BspCNI	CTCAG	3 cut(s)	254, 576, 693
BspEI	TCCGGA	1 cut(s)	466
BspMAI	CTGCAG	1 cut(s)	456
BspPI	GGATC	2 cut(s)	7, 456
BspQI	GCTCTTC	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
BssMI	GATC	4 cut(s)	12, 194, 448, 478
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	2 cut(s)	282, 535
BstC8I	GCNNGC	2 cut(s)	160, 764
BstDEI	CTNAG	4 cut(s)	241, 354, 563, 701
BstEII	GGTNACC	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	274, 463
BstKTI	GATC	4 cut(s)	15, 197, 451, 481
BstMBI	GATC	4 cut(s)	12, 194, 448, 478
BstMCI	CGRYCG	1 cut(s)	163
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 376, 752
BstPI	GGTNACC	1 cut(s)	6
BstSFI	CTRYAG	2 cut(s)	261, 452
BstV1I	GCAGC	3 cut(s)	333, 448, 556
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
BstZI	CGGCCG	1 cut(s)	160
BsuRI	GGCC	3 cut(s)	64, 98, 162
BtgZI	GCGATG	1 cut(s)	531
BtsCI	GGATG	2 cut(s)	274, 463
BtsI	GCAGTG	1 cut(s)	741
BtsIMutI	CAGTG	4 cut(s)	23, 203, 249, 741
Cac8I	GCNNGC	2 cut(s)	160, 764
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	96, 768
CseI	GACGC	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	351
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	4 cut(s)	241, 354, 563, 701
DpnI	GATC	4 cut(s)	14, 196, 450, 480
DpnII	GATC	4 cut(s)	12, 194, 448, 478
EaeI	YGGCCR	2 cut(s)	62, 160
EagI	CGGCCG	1 cut(s)	160
Eam1104I	CTCTTC	2 cut(s)	282, 535
EarI	CTCTTC	2 cut(s)	282, 535
EclXI	CGGCCG	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	768
Eco52I	CGGCCG	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	741
Eco91I	GGTNACC	1 cut(s)	6
EcoO65I	GGTNACC	1 cut(s)	6
FaiI	YATR	1 cut(s)	383
FalI	AAGNNNNNCTT	2 cut(s)	657, 689
FaqI	GGGAC	1 cut(s)	641
FauI	CCCGC	1 cut(s)	755
FblI	GTMKAC	1 cut(s)	224
Fnu4HI	GCNGC	4 cut(s)	163, 322, 437, 570
FokI	GGATG	2 cut(s)	281, 470
Fsp4HI	GCNGC	4 cut(s)	163, 322, 437, 570
GluI	GCNGC	4 cut(s)	163, 322, 437, 570
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	3 cut(s)	64, 98, 162
HapII	CCGG	4 cut(s)	69, 159, 293, 467
HgaI	GACGC	1 cut(s)	171
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HindIII	AAGCTT	2 cut(s)	309, 666
HinfI	GANTC	1 cut(s)	703
HpaII	CCGG	4 cut(s)	69, 159, 293, 467
Hpy166II	GTNNAC	2 cut(s)	201, 225
Hpy188I	TCNGA	7 cut(s)	17, 307, 483, 566, 604, 649, 679
Hpy188III	TCNNGA	2 cut(s)	190, 467
Hpy8I	GTNNAC	2 cut(s)	201, 225
HpyAV	CCTTC	1 cut(s)	546
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4V	TGCA	3 cut(s)	89, 454, 746
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 376, 752
HpyF3I	CTNAG	4 cut(s)	241, 354, 563, 701
Kpn2I	TCCGGA	1 cut(s)	466
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
Kzo9I	GATC	4 cut(s)	12, 194, 448, 478
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	351
Lsp1109I	GCAGC	3 cut(s)	333, 448, 556
LweI	GCATC	2 cut(s)	220, 448
MaeIII	GTNAC	3 cut(s)	6, 183, 333
MalI	GATC	4 cut(s)	14, 196, 450, 480
MboI	GATC	4 cut(s)	12, 194, 448, 478
MboII	GAAGA	4 cut(s)	289, 299, 522, 701
MflI	RGATCY	1 cut(s)	448
MhlI	GDGCHC	1 cut(s)	737
MluCI	AATT	1 cut(s)	622
MlyI	GAGTC	1 cut(s)	712
MnlI	CCTC	8 cut(s)	109, 187, 369, 535, 538, 550, 628, 709
MroI	TCCGGA	1 cut(s)	466
MroNI	GCCGGC	1 cut(s)	158
MseI	TTAA	1 cut(s)	141
MspI	CCGG	4 cut(s)	69, 159, 293, 467
Mva1269I	GAATGC	1 cut(s)	644
MwoI	GCNNNNNNNGC	3 cut(s)	95, 376, 752
NaeI	GCCGGC	1 cut(s)	160
NdeII	GATC	4 cut(s)	12, 194, 448, 478
NgoMIV	GCCGGC	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	183
PciSI	GCTCTTC	1 cut(s)	282
PctI	GAATGC	1 cut(s)	644
PdiI	GCCGGC	1 cut(s)	160
PkrI	GCNGC	4 cut(s)	164, 323, 438, 571
PleI	GAGTC	1 cut(s)	711
PpsI	GAGTC	1 cut(s)	711
PspEI	GGTNACC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	96, 768
PstI	CTGCAG	1 cut(s)	456
PsuI	RGATCY	1 cut(s)	448
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	4 cut(s)	163, 322, 437, 570
Sau3AI	GATC	4 cut(s)	12, 194, 448, 478
Sau96I	GGNCC	2 cut(s)	96, 768
SchI	GAGTC	1 cut(s)	712
SduI	GDGCHC	1 cut(s)	737
SfaNI	GCATC	2 cut(s)	220, 448
SfcI	CTRYAG	2 cut(s)	261, 452
SinI	GGWCC	1 cut(s)	768
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	1 cut(s)	622
SsiI	CCGC	6 cut(s)	21, 121, 126, 163, 762, 766
TaaI	ACNGT	1 cut(s)	36
TasI	AATT	1 cut(s)	622
TauI	GCSGC	1 cut(s)	165
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	4 cut(s)	30, 210, 249, 748
TseFI	GTSAC	1 cut(s)	183
TseI	GCWGC	3 cut(s)	321, 436, 569
Tsp45I	GTSAC	1 cut(s)	183
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	4 cut(s)	30, 210, 249, 748
VpaK11BI	GGWCC	1 cut(s)	768
XmiI	GTMKAC	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.