Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007014.1

Orthogroup ID

OG0018259

Physical Location & Seq

Genomic Coordinates Forward (+)

21815 .. 22462

Gene Structure 648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgcagatcggactcacttgggttgggcttggaattggaaagattggcatacatgttcttggccttgaagctctactgtcaagcaagaatcgagtagagaagagagcgatttcccgttccggtggcgacctcaacatcctccgctacctccaaaatgacagcgttttctcccaaatggtgatccatttctatttggcgaagatcgtctacgcgctagagcacctccacagcatggggatcgcttaccgggatttgaacctggagaacatgctgatccaacagtcgggtcacttgccctcagggacttcgacctttccaaaagcctcaagcacctacacactcggagattcgccacaagaacctcacgcgctggatctgccgcaaacatcgcaagaacttcaagcacctcaacgacgagcgggccaacttgtttgtcggcaccgaggagggacgacgccgtttaaggggaagagcaggaaggagacgttctggaacgtgctgacgaagacgccggagttggaagatgaggttgtgggctggagagtcgggtcggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0035670 GO:0036211 GO:0036290 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051782 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0080060 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

185

Amino Acids

20.57

Weight (kDa)

9.07

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	46 - 98	1.1e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018259)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003452.1_g000002 Rmu_sc0007014.1_g000003
rosa_samantha	Rh1CG033400 Rh2AG271600 Rh2AG510100 Rh2AG667200 Rh2BG678700 Rh2CG495300 Rh4BG379400 Rh4CG393800 Rh4DG131900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	438
AccB7I	CCANNNNNTGG	1 cut(s)	232
AccBSI	CCGCTC	1 cut(s)	419
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	2 cut(s)	212, 368
AciI	CCGC	3 cut(s)	142, 380, 419
AclWI	GGATC	4 cut(s)	175, 245, 268, 381
AcyI	GRCGYC	2 cut(s)	455, 509
AfiI	CCNNNNNNNGG	3 cut(s)	232, 283, 464
AflIII	ACRYGT	1 cut(s)	52
AgsI	TTSAA	3 cut(s)	68, 256, 401
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	476
AlwI	GGATC	4 cut(s)	175, 245, 268, 381
AoxI	GGCC	2 cut(s)	61, 421
AspLEI	GCGC	2 cut(s)	214, 370
AspS9I	GGNCC	1 cut(s)	421
AsuC2I	CCSGG	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	190
AxyI	CCTNAGG	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	438
BarI	GAAGNNNNNNTAC	2 cut(s)	191, 223
BbsI	GAAGAC	1 cut(s)	512
Bbv12I	GWGCWC	1 cut(s)	222
BceAI	ACGGC	1 cut(s)	442
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BciT130I	CCWGG	1 cut(s)	260
BcnI	CCSGG	1 cut(s)	248
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	1 cut(s)	215
BisI	GCNGC	1 cut(s)	380
BlsI	GCNGC	1 cut(s)	381
Bme1390I	CCNGG	2 cut(s)	248, 260
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	1 cut(s)	440
BmrFI	CCNGG	2 cut(s)	248, 260
BpiI	GAAGAC	1 cut(s)	512
BpmI	CTGGAG	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	310
BpuMI	CCSGG	1 cut(s)	248
BsaHI	GRCGYC	2 cut(s)	455, 509
BsaJI	CCNNGG	1 cut(s)	442
BsaWI	WCCGGW	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 283, 464
Bse21I	CCTNAGG	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	442
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	3 cut(s)	232, 283, 464
BseMII	CTCAG	1 cut(s)	312
BseRI	GAGGAG	1 cut(s)	459
Bsh1236I	CGCG	2 cut(s)	212, 368
BshFI	GGCC	2 cut(s)	63, 423
BshNI	GGYRCC	1 cut(s)	438
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	3 cut(s)	120, 247, 512
BslFI	GGGAC	2 cut(s)	316, 463
BslI	CCNNNNNNNGG	3 cut(s)	232, 283, 464
BsmAI	GTCTC	1 cut(s)	476
BsmBI	CGTCTC	1 cut(s)	476
BsmFI	GGGAC	2 cut(s)	316, 463
BsnI	GGCC	2 cut(s)	63, 423
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	6 cut(s)	6, 180, 201, 237, 273, 373
BspACI	CCGC	3 cut(s)	142, 380, 419
BspANI	GGCC	2 cut(s)	63, 423
BspCNI	CTCAG	1 cut(s)	311
BspFNI	CGCG	2 cut(s)	212, 368
BspLI	GGNNCC	1 cut(s)	440
BspPI	GGATC	4 cut(s)	175, 245, 268, 381
BspQI	GCTCTTC	1 cut(s)	464
BspT107I	GGYRCC	1 cut(s)	438
BsrBI	CCGCTC	1 cut(s)	419
BssECI	CCNNGG	1 cut(s)	442
BssMI	GATC	6 cut(s)	6, 180, 201, 237, 273, 373
BssNI	GRCGYC	2 cut(s)	455, 509
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	2 cut(s)	78, 282
Bst6I	CTCTTC	2 cut(s)	95, 464
BstACI	GRCGYC	2 cut(s)	455, 509
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	1 cut(s)	298
BstF5I	GGATG	1 cut(s)	135
BstFNI	CGCG	2 cut(s)	212, 368
BstHHI	GCGC	2 cut(s)	214, 370
BstKTI	GATC	6 cut(s)	9, 183, 204, 240, 276, 376
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	6 cut(s)	6, 180, 201, 237, 273, 373
BstMWI	GCNNNNNNNGC	2 cut(s)	376, 388
BstNI	CCWGG	1 cut(s)	260
BstNSI	RCATGY	2 cut(s)	56, 271
BstSCI	CCNGG	2 cut(s)	246, 258
BstUI	CGCG	2 cut(s)	212, 368
BstV2I	GAAGAC	1 cut(s)	512
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
Bsu36I	CCTNAGG	1 cut(s)	298
BsuRI	GGCC	2 cut(s)	63, 423
BtgZI	GCGATG	1 cut(s)	372
BtsCI	GGATG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	421
CfoI	GCGC	2 cut(s)	214, 370
Cfr13I	GGNCC	1 cut(s)	421
CseI	GACGC	2 cut(s)	463, 517
CviAII	CATG	3 cut(s)	53, 232, 268
CviJI	RGCY	6 cut(s)	28, 63, 71, 323, 423, 537
CviKI_1	RGCY	6 cut(s)	28, 63, 71, 323, 423, 537
DdeI	CTNAG	1 cut(s)	298
DpnI	GATC	6 cut(s)	8, 182, 203, 239, 275, 375
DpnII	GATC	6 cut(s)	6, 180, 201, 237, 273, 373
Eam1104I	CTCTTC	2 cut(s)	95, 464
EarI	CTCTTC	2 cut(s)	95, 464
Eco81I	CCTNAGG	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	258
Esp3I	CGTCTC	1 cut(s)	476
FaeI	CATG	3 cut(s)	56, 235, 271
FaiI	YATR	4 cut(s)	50, 54, 233, 269
FaqI	GGGAC	2 cut(s)	316, 463
FatI	CATG	3 cut(s)	52, 231, 267
FauI	CCCGC	1 cut(s)	412
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	1 cut(s)	380
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	380
FspBI	CTAG	1 cut(s)	215
GlaI	GCGC	2 cut(s)	213, 369
GluI	GCNGC	1 cut(s)	380
GsuI	CTGGAG	1 cut(s)	281
HaeIII	GGCC	2 cut(s)	63, 423
HapII	CCGG	3 cut(s)	120, 247, 512
HgaI	GACGC	2 cut(s)	463, 517
HhaI	GCGC	2 cut(s)	214, 370
Hin1I	GRCGYC	2 cut(s)	455, 509
Hin1II	CATG	3 cut(s)	56, 235, 271
Hin6I	GCGC	2 cut(s)	212, 368
HinP1I	GCGC	2 cut(s)	212, 368
HinfI	GANTC	4 cut(s)	12, 88, 347, 543
HpaII	CCGG	3 cut(s)	120, 247, 512
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	3 cut(s)	11, 344, 553
Hpy188III	TCNNGA	1 cut(s)	490
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	2 cut(s)	417, 457
HpyAV	CCTTC	1 cut(s)	472
HpyCH4III	ACNGT	2 cut(s)	78, 282
HpyCH4IV	ACGT	2 cut(s)	485, 495
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	376, 388
HpyF3I	CTNAG	1 cut(s)	298
HpySE526I	ACGT	2 cut(s)	485, 495
Hsp92I	GRCGYC	2 cut(s)	455, 509
Hsp92II	CATG	3 cut(s)	56, 235, 271
HspAI	GCGC	2 cut(s)	212, 368
Kzo9I	GATC	6 cut(s)	6, 180, 201, 237, 273, 373
LguI	GCTCTTC	1 cut(s)	464
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	2 cut(s)	485, 495
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	6 cut(s)	8, 182, 203, 239, 275, 375
MbiI	CCGCTC	1 cut(s)	419
MboI	GATC	6 cut(s)	6, 180, 201, 237, 273, 373
MboII	GAAGA	5 cut(s)	112, 211, 481, 517, 533
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	1 cut(s)	33
MlyI	GAGTC	2 cut(s)	6, 552
MmeI	TCCRAC	3 cut(s)	301, 498, 531
MseI	TTAA	1 cut(s)	462
MspI	CCGG	3 cut(s)	120, 247, 512
MspR9I	CCNGG	2 cut(s)	248, 260
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	2 cut(s)	212, 368
MwoI	GCNNNNNNNGC	2 cut(s)	376, 388
NciI	CCSGG	1 cut(s)	248
NdeII	GATC	6 cut(s)	6, 180, 201, 237, 273, 373
NlaIII	CATG	3 cut(s)	56, 235, 271
NlaIV	GGNNCC	1 cut(s)	440
NmuCI	GTSAC	1 cut(s)	287
NspI	RCATGY	2 cut(s)	56, 271
PciI	ACATGT	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	464
PfeI	GAWTC	2 cut(s)	88, 347
PflMI	CCANNNNNTGG	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	381
PleI	GAGTC	2 cut(s)	6, 551
PpsI	GAGTC	2 cut(s)	6, 551
PscI	ACATGT	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	440
PspPI	GGNCC	1 cut(s)	421
PsuI	RGATCY	1 cut(s)	373
SapI	GCTCTTC	1 cut(s)	464
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	1 cut(s)	380
Sau3AI	GATC	6 cut(s)	6, 180, 201, 237, 273, 373
Sau96I	GGNCC	1 cut(s)	421
SchI	GAGTC	2 cut(s)	6, 552
ScrFI	CCNGG	2 cut(s)	248, 260
SduI	GDGCHC	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
Sse9I	AATT	1 cut(s)	33
SsiI	CCGC	3 cut(s)	142, 380, 419
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	2 cut(s)	246, 258
TaaI	ACNGT	2 cut(s)	78, 282
TaiI	ACGT	2 cut(s)	488, 498
TaqI	TCGA	2 cut(s)	91, 308
TasI	AATT	1 cut(s)	33
TauI	GCSGC	1 cut(s)	382
TfiI	GAWTC	2 cut(s)	88, 347
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TseFI	GTSAC	1 cut(s)	287
Tsp45I	GTSAC	1 cut(s)	287
Van91I	CCANNNNNTGG	1 cut(s)	232
XceI	RCATGY	2 cut(s)	56, 271
XmiI	GTMKAC	1 cut(s)	207
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.