Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007593.1

Orthogroup ID

OG0010313

Physical Location & Seq

Genomic Coordinates Forward (+)

44910 .. 51849

Gene Structure 6940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007593.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

atgctcacagctcacgggaatctaatcccgagtggactcgcagcagactcttataagaaggcggtggagtcagccatggagaagctgagggagctggaagccgacgcttgctacggcggcgacgtctccaaagttcccaagccgccttcgtatgtctccttagatatcgctttcattttgtataactgtactcgctttcactggtgtggattttccagcacgcagaaaacgccgatagagctggcgattgatttcactcttcacgatttcgagatggcagaagttgaacccatagcaacgtataacgatttcggagaacaggaatttttagttgcagatgaaagagggtacgagcatttgctatataaaatggctgatgattttctttttacctctgagggtaaaatcttggacagtcgtctcagtctcaataaggttgttcgggaattgaagcactcgagggacggcgttaccgtaatgacggaggacggttgcgtctatcaagcaaattacgtgattttgtcagctagcatcggagtcctccaaagcaatctcatttccttcagtccacccttgcctaggtggaaaactgaggccatagagaaattggatgtgatggtatatacgaagatctttctcaagttccctcacaagttctggccatgtggtcctgggaaagagttcttcatctatgcccatgagcggagaggctactacacattttggcagcacatggaaaatgcatatcctgggtccaatatcctggtcgtgacattgacaaatggggaatcaaagcgtgtggaagctcagactgacgaggagacggtgaaagaagccatgggggttcttagggacatgtttggacccaacattcctgaagctactgatatactcgtaccccgctggtggaacaataggttccagcgtggcagctatagcaactacccaataatctctaatcatcaagttgttcgtgatatcaaggccccagtaggttgcatcttcttcacaggagaacacacgagcgaaaaatacagtggctatgttcatggtgcataccttactgggattgacactgcaaatgcgctgcttgaagaaatgggtaggcaggaggaaaggagtagcgagaataaaacttcgttgtcagaacccttgctagcattgactagttcactaattttgacacagaaagatgctgtatcgagtctaaaatgcgatgtccctacacacttatatcttggtgccaaacaccccaaactatattatgactactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0006576 GO:0006595 GO:0006598 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009308 GO:0009310 GO:0009987 GO:0016491 GO:0016645 GO:0016647 GO:0034641 GO:0036094 GO:0042402 GO:0043167 GO:0043168 GO:0044106 GO:0044237 GO:0046592 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0097159 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00330 ko00410 ko01100 map00330 map00410 map01100

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

424

Amino Acids

48.06

Weight (kDa)

5.45

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13700
fragaria_vesca	FvH4_7g01450 FvH4_7g01450
malus_domestica	MD02G1306200.v1.1 MD07G1018400.v1.1
prunus_persica	Prupe.2G020100_v2.0.a1
pyrus_communis	pycom02g25660 pycom07g01450
rosa_chinensis	RchiOBHm_Chr1g0317291
rosa_laevigata	RLG00000029573 RLG00000030612
rosa_multiflora	Rmu_sc0007593.1_g000009 Rmu_sc0039313.1_g000001 Rmu_sc0039399.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330540
rosa_rugosa	Rorug01G0015600
rosa_samantha	Rh1AG026800 Rh1BG022900 Rh1CG024900 Rh1DG046800
rosa_wichuraiana	Rw1G001860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	54
AasI	GACNNNNNNGTC	1 cut(s)	494
AatII	GACGTC	1 cut(s)	126
AccB1I	GGYRCC	1 cut(s)	1241
AccBSI	CCGCTC	1 cut(s)	703
AciI	CCGC	5 cut(s)	62, 117, 143, 703, 901
AcoI	YGGCCR	1 cut(s)	659
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	2 cut(s)	547, 897
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	3 cut(s)	190, 350, 897
AfiI	CCNNNNNNNGG	3 cut(s)	579, 702, 906
AflIII	ACRYGT	1 cut(s)	855
AgsI	TTSAA	3 cut(s)	287, 451, 1094
AhlI	ACTAGT	1 cut(s)	1166
AjnI	CCWGG	3 cut(s)	670, 748, 762
AleI	CACNNNNGTG	1 cut(s)	204
AluBI	AGCT	8 cut(s)	11, 85, 94, 241, 527, 806, 881, 933
AluI	AGCT	8 cut(s)	11, 85, 94, 241, 527, 806, 881, 933
Alw26I	GTCTC	5 cut(s)	130, 160, 425, 431, 815
Ama87I	CYCGRG	2 cut(s)	28, 457
AoxI	GGCC	3 cut(s)	594, 659, 984
ApeKI	GCWGC	4 cut(s)	41, 727, 930, 1087
ApoI	RAATTY	1 cut(s)	323
Asp700I	GAANNNNTTC	1 cut(s)	680
AspA2I	CCTAGG	1 cut(s)	578
AspLEI	GCGC	1 cut(s)	1087
AspS9I	GGNCC	4 cut(s)	668, 753, 863, 985
AsuHPI	GGTGA	1 cut(s)	838
AsuNHI	GCTAGC	2 cut(s)	527, 1156
AvaI	CYCGRG	2 cut(s)	28, 457
AvaII	GGWCC	3 cut(s)	668, 753, 863
AvrII	CCTAGG	1 cut(s)	578
BalI	TGGCCA	1 cut(s)	661
BanI	GGYRCC	1 cut(s)	1241
BauI	CACGAG	1 cut(s)	1021
BbvCI	CCTCAGC	1 cut(s)	86
BbvI	GCAGC	4 cut(s)	53, 739, 942, 1074
BccI	CCATC	2 cut(s)	268, 610
BceAI	ACGGC	2 cut(s)	130, 481
BciT130I	CCWGG	3 cut(s)	672, 750, 764
BcoDI	GTCTC	5 cut(s)	130, 160, 425, 431, 815
BcuI	ACTAGT	1 cut(s)	1166
BfaI	CTAG	5 cut(s)	528, 579, 1157, 1167, 1273
BfmI	CTRYAG	1 cut(s)	934
BglII	AGATCT	1 cut(s)	630
BisI	GCNGC	6 cut(s)	42, 118, 143, 728, 931, 1088
BlnI	CCTAGG	1 cut(s)	578
BlsI	GCNGC	6 cut(s)	43, 119, 144, 729, 932, 1089
Bme1390I	CCNGG	3 cut(s)	672, 750, 764
Bme18I	GGWCC	3 cut(s)	668, 753, 863
BmeT110I	CYCGRG	2 cut(s)	28, 457
BmgT120I	GGNCC	4 cut(s)	668, 753, 863, 985
BmiI	GGNNCC	5 cut(s)	754, 865, 920, 987, 1243
BmrFI	CCNGG	3 cut(s)	672, 750, 764
BmrI	ACTGGG	2 cut(s)	983, 1074
BmsI	GCATC	3 cut(s)	540, 1008, 1183
BmtI	GCTAGC	2 cut(s)	531, 1160
BmuI	ACTGGG	2 cut(s)	983, 1074
BoxI	GACNNNNGTC	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	86
BpuEI	CTTGAG	1 cut(s)	623
BsaAI	YACGTR	1 cut(s)	514
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	5 cut(s)	75, 578, 671, 749, 837
Bsc4I	CCNNNNNNNGG	3 cut(s)	579, 702, 906
Bse1I	ACTGG	3 cut(s)	206, 989, 1069
BseBI	CCWGG	3 cut(s)	672, 750, 764
BseDI	CCNNGG	5 cut(s)	75, 578, 671, 749, 837
BseGI	GGATG	1 cut(s)	616
BseLI	CCNNNNNNNGG	3 cut(s)	579, 702, 906
BseMII	CTCAG	5 cut(s)	77, 387, 436, 582, 821
BseNI	ACTGG	3 cut(s)	206, 989, 1069
BseRI	GAGGAG	1 cut(s)	833
BseXI	GCAGC	4 cut(s)	53, 739, 942, 1074
BshFI	GGCC	3 cut(s)	596, 661, 986
BshNI	GGYRCC	1 cut(s)	1241
BsiHKCI	CYCGRG	2 cut(s)	28, 457
BslFI	GGGAC	3 cut(s)	476, 866, 1205
BslI	CCNNNNNNNGG	3 cut(s)	579, 702, 906
BsmAI	GTCTC	5 cut(s)	130, 160, 425, 431, 815
BsmBI	CGTCTC	3 cut(s)	130, 425, 815
BsmFI	GGGAC	3 cut(s)	476, 866, 1205
BsnI	GGCC	3 cut(s)	596, 661, 986
BsoBI	CYCGRG	2 cut(s)	28, 457
Bsp143I	GATC	1 cut(s)	630
Bsp19I	CCATGG	2 cut(s)	75, 837
BspACI	CCGC	5 cut(s)	62, 117, 143, 703, 901
BspANI	GGCC	3 cut(s)	596, 661, 986
BspCNI	CTCAG	5 cut(s)	78, 388, 435, 583, 820
BspLI	GGNNCC	5 cut(s)	754, 865, 920, 987, 1243
BspOI	GCTAGC	2 cut(s)	531, 1160
BspT107I	GGYRCC	1 cut(s)	1241
BsrBI	CCGCTC	1 cut(s)	703
BsrI	ACTGG	3 cut(s)	206, 989, 1069
BssECI	CCNNGG	5 cut(s)	75, 578, 671, 749, 837
BssMI	GATC	1 cut(s)	630
BssNI	GRCGYC	1 cut(s)	123
BssSI	CACGAG	1 cut(s)	1021
BssT1I	CCWWGG	3 cut(s)	75, 578, 837
Bst2BI	CACGAG	1 cut(s)	1021
Bst2UI	CCWGG	3 cut(s)	672, 750, 764
Bst4CI	ACNGT	6 cut(s)	188, 416, 475, 491, 826, 1037
Bst6I	CTCTTC	1 cut(s)	264
BstACI	GRCGYC	1 cut(s)	123
BstBAI	YACGTR	1 cut(s)	514
BstC8I	GCNNGC	5 cut(s)	109, 221, 243, 529, 1158
BstDEI	CTNAG	7 cut(s)	86, 160, 396, 422, 591, 807, 848
BstDSI	CCRYGG	2 cut(s)	75, 837
BstENI	CCTNNNNNAGG	1 cut(s)	577
BstF5I	GGATG	1 cut(s)	616
BstHHI	GCGC	1 cut(s)	1087
BstKTI	GATC	1 cut(s)	633
BstMAI	GTCTC	5 cut(s)	130, 160, 425, 431, 815
BstMBI	GATC	1 cut(s)	630
BstMWI	GCNNNNNNNGC	5 cut(s)	91, 117, 229, 238, 936
BstNI	CCWGG	3 cut(s)	672, 750, 764
BstNSI	RCATGY	1 cut(s)	859
BstPAI	GACNNNNGTC	1 cut(s)	417
BstSCI	CCNGG	3 cut(s)	670, 748, 762
BstSFI	CTRYAG	1 cut(s)	934
BstV1I	GCAGC	4 cut(s)	53, 739, 942, 1074
BstX2I	RGATCY	1 cut(s)	630
BstXI	CCANNNNNNTGG	1 cut(s)	763
BstYI	RGATCY	1 cut(s)	630
BsuRI	GGCC	3 cut(s)	596, 661, 986
BtgI	CCRYGG	2 cut(s)	75, 837
BtgZI	GCGATG	1 cut(s)	1230
BtsCI	GGATG	1 cut(s)	616
BtsI	GCAGTG	1 cut(s)	1074
BtsIMutI	CAGTG	3 cut(s)	199, 1042, 1074
Cac8I	GCNNGC	5 cut(s)	109, 221, 243, 529, 1158
CfoI	GCGC	1 cut(s)	1087
Cfr13I	GGNCC	4 cut(s)	668, 753, 863, 985
CseI	GACGC	2 cut(s)	113, 484
Csp6I	GTAC	3 cut(s)	189, 349, 896
CspCI	CAANNNNNGTGG	2 cut(s)	780, 815
CviAII	CATG	7 cut(s)	76, 663, 698, 733, 838, 856, 1049
CviQI	GTAC	3 cut(s)	189, 349, 896
DdeI	CTNAG	7 cut(s)	86, 160, 396, 422, 591, 807, 848
DpnI	GATC	1 cut(s)	632
DpnII	GATC	1 cut(s)	630
DrdI	GACNNNNNNGTC	1 cut(s)	494
DseDI	GACNNNNNNGTC	1 cut(s)	494
EaeI	YGGCCR	1 cut(s)	659
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco130I	CCWWGG	3 cut(s)	75, 578, 837
Eco32I	GATATC	2 cut(s)	166, 979
Eco47I	GGWCC	3 cut(s)	668, 753, 863
Eco57I	CTGAAG	2 cut(s)	547, 897
Eco88I	CYCGRG	2 cut(s)	28, 457
EcoNI	CCTNNNNNAGG	1 cut(s)	577
EcoO109I	RGGNCCY	1 cut(s)	985
EcoRII	CCWGG	3 cut(s)	670, 748, 762
EcoRV	GATATC	2 cut(s)	166, 979
EcoT14I	CCWWGG	3 cut(s)	75, 578, 837
EcoT22I	ATGCAT	1 cut(s)	745
ErhI	CCWWGG	3 cut(s)	75, 578, 837
Esp3I	CGTCTC	3 cut(s)	130, 425, 815
FaeI	CATG	7 cut(s)	79, 666, 701, 736, 841, 859, 1052
FaqI	GGGAC	3 cut(s)	476, 866, 1205
FatI	CATG	7 cut(s)	75, 662, 697, 732, 837, 855, 1048
FauI	CCCGC	1 cut(s)	908
Fnu4HI	GCNGC	6 cut(s)	42, 118, 143, 728, 931, 1088
FokI	GGATG	1 cut(s)	623
Fsp4HI	GCNGC	6 cut(s)	42, 118, 143, 728, 931, 1088
FspBI	CTAG	5 cut(s)	528, 579, 1157, 1167, 1273
GlaI	GCGC	1 cut(s)	1086
GluI	GCNGC	6 cut(s)	42, 118, 143, 728, 931, 1088
HaeIII	GGCC	3 cut(s)	596, 661, 986
HgaI	GACGC	2 cut(s)	113, 484
HhaI	GCGC	1 cut(s)	1087
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	7 cut(s)	79, 666, 701, 736, 841, 859, 1052
Hin6I	GCGC	1 cut(s)	1085
HinP1I	GCGC	1 cut(s)	1085
HinfI	GANTC	7 cut(s)	19, 36, 47, 68, 537, 788, 1204
HphI	GGTGA	1 cut(s)	838
Hpy166II	GTNNAC	3 cut(s)	35, 569, 1172
Hpy188I	TCNGA	5 cut(s)	314, 397, 536, 810, 1147
Hpy188III	TCNNGA	7 cut(s)	28, 263, 271, 443, 769, 875, 974
Hpy8I	GTNNAC	3 cut(s)	35, 569, 1172
Hpy99I	CGWCG	2 cut(s)	107, 125
HpyAV	CCTTC	3 cut(s)	52, 156, 571
HpyCH4III	ACNGT	6 cut(s)	188, 416, 475, 491, 826, 1037
HpyCH4IV	ACGT	3 cut(s)	123, 299, 513
HpyCH4V	TGCA	5 cut(s)	335, 743, 999, 1055, 1079
HpyF10VI	GCNNNNNNNGC	5 cut(s)	91, 117, 229, 238, 936
HpyF3I	CTNAG	7 cut(s)	86, 160, 396, 422, 591, 807, 848
HpySE526I	ACGT	3 cut(s)	123, 299, 513
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	7 cut(s)	79, 666, 701, 736, 841, 859, 1052
HspAI	GCGC	1 cut(s)	1085
Kzo9I	GATC	1 cut(s)	630
LmnI	GCTCC	1 cut(s)	91
Lsp1109I	GCAGC	4 cut(s)	53, 739, 942, 1074
LweI	GCATC	3 cut(s)	540, 1008, 1183
MaeI	CTAG	5 cut(s)	528, 579, 1157, 1167, 1273
MaeII	ACGT	3 cut(s)	123, 299, 513
MaeIII	GTNAC	2 cut(s)	469, 769
MalI	GATC	1 cut(s)	632
MbiI	CCGCTC	1 cut(s)	703
MboI	GATC	1 cut(s)	630
MboII	GAAGA	6 cut(s)	251, 640, 676, 994, 997, 1106
MflI	RGATCY	1 cut(s)	630
MlsI	TGGCCA	1 cut(s)	661
MluCI	AATT	5 cut(s)	323, 446, 508, 605, 1176
MluNI	TGGCCA	1 cut(s)	661
MlyI	GAGTC	5 cut(s)	30, 41, 77, 546, 1213
Mox20I	TGGCCA	1 cut(s)	661
Mph1103I	ATGCAT	1 cut(s)	745
MroXI	GAANNNNTTC	1 cut(s)	680
MscI	TGGCCA	1 cut(s)	661
MslI	CAYNNNNRTG	1 cut(s)	204
Msp20I	TGGCCA	1 cut(s)	661
MspA1I	CMGCKG	1 cut(s)	903
MspR9I	CCNGG	3 cut(s)	672, 750, 764
MvaI	CCWGG	3 cut(s)	672, 750, 764
MwoI	GCNNNNNNNGC	5 cut(s)	91, 117, 229, 238, 936
NcoI	CCATGG	2 cut(s)	75, 837
NdeII	GATC	1 cut(s)	630
NheI	GCTAGC	2 cut(s)	527, 1156
NlaIII	CATG	7 cut(s)	79, 666, 701, 736, 841, 859, 1052
NlaIV	GGNNCC	5 cut(s)	754, 865, 920, 987, 1243
NmuCI	GTSAC	1 cut(s)	769
NsiI	ATGCAT	1 cut(s)	745
NspI	RCATGY	1 cut(s)	859
OliI	CACNNNNGTG	1 cut(s)	204
PaeR7I	CTCGAG	1 cut(s)	457
PciI	ACATGT	1 cut(s)	855
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 471
PdmI	GAANNNNTTC	1 cut(s)	680
PfeI	GAWTC	2 cut(s)	19, 788
PkrI	GCNGC	6 cut(s)	43, 119, 144, 729, 932, 1089
PleI	GAGTC	5 cut(s)	30, 41, 76, 545, 1212
PpsI	GAGTC	5 cut(s)	30, 41, 76, 545, 1212
Ppu21I	YACGTR	1 cut(s)	514
PscI	ACATGT	1 cut(s)	855
PshAI	GACNNNNGTC	1 cut(s)	417
PsiI	TTATAA	1 cut(s)	54
Psp6I	CCWGG	3 cut(s)	670, 748, 762
PspGI	CCWGG	3 cut(s)	670, 748, 762
PspN4I	GGNNCC	5 cut(s)	754, 865, 920, 987, 1243
PspPI	GGNCC	4 cut(s)	668, 753, 863, 985
PspXI	VCTCGAGB	1 cut(s)	457
PsuI	RGATCY	1 cut(s)	630
RsaI	GTAC	3 cut(s)	190, 350, 897
RsaNI	GTAC	3 cut(s)	189, 349, 896
RseI	CAYNNNNRTG	1 cut(s)	204
SatI	GCNGC	6 cut(s)	42, 118, 143, 728, 931, 1088
Sau3AI	GATC	1 cut(s)	630
Sau96I	GGNCC	4 cut(s)	668, 753, 863, 985
SchI	GAGTC	5 cut(s)	30, 41, 77, 546, 1213
ScrFI	CCNGG	3 cut(s)	672, 750, 764
SfaNI	GCATC	3 cut(s)	540, 1008, 1183
SfcI	CTRYAG	1 cut(s)	934
Sfr274I	CTCGAG	1 cut(s)	457
SinI	GGWCC	3 cut(s)	668, 753, 863
SlaI	CTCGAG	1 cut(s)	457
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	2 cut(s)	457, 638
SmoI	CTYRAG	2 cut(s)	457, 638
SpeI	ACTAGT	1 cut(s)	1166
Sse9I	AATT	5 cut(s)	323, 446, 508, 605, 1176
SsiI	CCGC	5 cut(s)	62, 117, 143, 703, 901
SspMI	CTAG	5 cut(s)	528, 579, 1157, 1167, 1273
StyD4I	CCNGG	3 cut(s)	670, 748, 762
StyI	CCWWGG	3 cut(s)	75, 578, 837
TaaI	ACNGT	6 cut(s)	188, 416, 475, 491, 826, 1037
TaiI	ACGT	3 cut(s)	126, 302, 516
TaqI	TCGA	3 cut(s)	270, 458, 1202
TasI	AATT	5 cut(s)	323, 446, 508, 605, 1176
TatI	WGTACW	1 cut(s)	188
TauI	GCSGC	2 cut(s)	120, 145
TfiI	GAWTC	2 cut(s)	19, 788
TscAI	CASTG	3 cut(s)	206, 1042, 1081
TseFI	GTSAC	1 cut(s)	769
TseI	GCWGC	4 cut(s)	41, 727, 930, 1087
Tsp45I	GTSAC	1 cut(s)	769
TspDTI	ATGAA	4 cut(s)	163, 354, 676, 1037
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	3 cut(s)	206, 1042, 1081
VpaK11BI	GGWCC	3 cut(s)	668, 753, 863
XagI	CCTNNNNNAGG	1 cut(s)	577
XapI	RAATTY	1 cut(s)	323
XceI	RCATGY	1 cut(s)	859
XcmI	CCANNNNNNNNNTGG	1 cut(s)	604
XhoI	CTCGAG	1 cut(s)	457
XmaJI	CCTAGG	1 cut(s)	578
XmnI	GAANNNNTTC	1 cut(s)	680
XspI	CTAG	5 cut(s)	528, 579, 1157, 1167, 1273
ZraI	GACGTC	1 cut(s)	124
Zsp2I	ATGCAT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.