Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039399.1

Orthogroup ID

OG0010313

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 637

Gene Structure 637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039399.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 301 bp

cgggaatctaatcccgagtggactcgcagcagactcttataagaaggcggtggagtcagccatggagaagctgagggagctggaagccgacgcttgctacggcggcgacgtctccaaagttcccaagccgccttcgtatgtctccttagatatcgctttcattttgtataactgtactcgctttcactggtgcggattttccagcacgcagaaaacgccgatagagctggcgattgatttcactcttcacgatttcgagatggcaggtcagcttttgattaatgatccaaaatgcatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0006576 GO:0006595 GO:0006598 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009308 GO:0009310 GO:0009987 GO:0016491 GO:0016645 GO:0016647 GO:0034641 GO:0036094 GO:0042402 GO:0043167 GO:0043168 GO:0044106 GO:0044237 GO:0046592 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0097159 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00330 ko00410 ko01100 map00330 map00410 map01100

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

99

Amino Acids

10.92

Weight (kDa)

4.97

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13700
fragaria_vesca	FvH4_7g01450 FvH4_7g01450
malus_domestica	MD02G1306200.v1.1 MD07G1018400.v1.1
prunus_persica	Prupe.2G020100_v2.0.a1
pyrus_communis	pycom02g25660 pycom07g01450
rosa_chinensis	RchiOBHm_Chr1g0317291
rosa_laevigata	RLG00000029573 RLG00000030612
rosa_multiflora	Rmu_sc0007593.1_g000009 Rmu_sc0039313.1_g000001 Rmu_sc0039399.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330540
rosa_rugosa	Rorug01G0015600
rosa_samantha	Rh1AG026800 Rh1BG022900 Rh1CG024900 Rh1DG046800
rosa_wichuraiana	Rw1G001860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	40
AatII	GACGTC	1 cut(s)	112
Acc36I	ACCTGC	1 cut(s)	255
AciI	CCGC	4 cut(s)	48, 103, 129, 193
AclWI	GGATC	1 cut(s)	279
AcyI	GRCGYC	1 cut(s)	109
AfaI	GTAC	1 cut(s)	176
AluBI	AGCT	4 cut(s)	71, 80, 227, 272
AluI	AGCT	4 cut(s)	71, 80, 227, 272
Alw26I	GTCTC	2 cut(s)	116, 146
AlwI	GGATC	1 cut(s)	279
Ama87I	CYCGRG	1 cut(s)	14
ApeKI	GCWGC	1 cut(s)	27
AseI	ATTAAT	1 cut(s)	280
AvaI	CYCGRG	1 cut(s)	14
BbvCI	CCTCAGC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	39
BccI	CCATC	1 cut(s)	254
BceAI	ACGGC	1 cut(s)	116
BcoDI	GTCTC	2 cut(s)	116, 146
BfuAI	ACCTGC	1 cut(s)	255
BisI	GCNGC	3 cut(s)	28, 104, 129
BlsI	GCNGC	3 cut(s)	29, 105, 130
BmeT110I	CYCGRG	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	72
BsaHI	GRCGYC	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	39
BsiHKCI	CYCGRG	1 cut(s)	14
BsmAI	GTCTC	2 cut(s)	116, 146
BsmBI	CGTCTC	1 cut(s)	116
BsoBI	CYCGRG	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	284
Bsp19I	CCATGG	1 cut(s)	61
BspACI	CCGC	4 cut(s)	48, 103, 129, 193
BspCNI	CTCAG	1 cut(s)	64
BspMI	ACCTGC	1 cut(s)	255
BspPI	GGATC	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	1 cut(s)	284
BssNI	GRCGYC	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	61
Bst4CI	ACNGT	1 cut(s)	174
Bst6I	CTCTTC	1 cut(s)	250
BstACI	GRCGYC	1 cut(s)	109
BstC8I	GCNNGC	3 cut(s)	95, 207, 229
BstDEI	CTNAG	2 cut(s)	72, 146
BstDSI	CCRYGG	1 cut(s)	61
BstKTI	GATC	1 cut(s)	287
BstMAI	GTCTC	2 cut(s)	116, 146
BstMBI	GATC	1 cut(s)	284
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 103, 215, 224
BstV1I	GCAGC	1 cut(s)	39
BtgI	CCRYGG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	185
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	3 cut(s)	95, 207, 229
CseI	GACGC	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	7 cut(s)	60, 71, 80, 87, 128, 227, 272
CviKI_1	RGCY	7 cut(s)	60, 71, 80, 87, 128, 227, 272
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	2 cut(s)	72, 146
DpnI	GATC	1 cut(s)	286
DpnII	GATC	1 cut(s)	284
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	61
Eco32I	GATATC	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	14
EcoRV	GATATC	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	61
EcoT22I	ATGCAT	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	61
Esp3I	CGTCTC	1 cut(s)	116
FaeI	CATG	1 cut(s)	65
FaiI	YATR	4 cut(s)	40, 63, 139, 169
FatI	CATG	1 cut(s)	61
Fnu4HI	GCNGC	3 cut(s)	28, 104, 129
Fsp4HI	GCNGC	3 cut(s)	28, 104, 129
GluI	GCNGC	3 cut(s)	28, 104, 129
HgaI	GACGC	1 cut(s)	99
Hin1I	GRCGYC	1 cut(s)	109
Hin1II	CATG	1 cut(s)	65
HinfI	GANTC	4 cut(s)	5, 22, 33, 54
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188III	TCNNGA	3 cut(s)	14, 249, 257
Hpy8I	GTNNAC	1 cut(s)	21
Hpy99I	CGWCG	2 cut(s)	93, 111
HpyAV	CCTTC	2 cut(s)	38, 142
HpyCH4III	ACNGT	1 cut(s)	174
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 103, 215, 224
HpyF3I	CTNAG	2 cut(s)	72, 146
HpySE526I	ACGT	1 cut(s)	109
Hsp92I	GRCGYC	1 cut(s)	109
Hsp92II	CATG	1 cut(s)	65
Kzo9I	GATC	1 cut(s)	284
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	5 cut(s)	66, 173, 213, 215, 250
Lsp1109I	GCAGC	1 cut(s)	39
MaeII	ACGT	1 cut(s)	109
MalI	GATC	1 cut(s)	286
MboI	GATC	1 cut(s)	284
MboII	GAAGA	1 cut(s)	237
MlyI	GAGTC	3 cut(s)	16, 27, 63
MnlI	CCTC	1 cut(s)	67
Mph1103I	ATGCAT	1 cut(s)	297
MseI	TTAA	2 cut(s)	280, 299
MwoI	GCNNNNNNNGC	4 cut(s)	77, 103, 215, 224
NcoI	CCATGG	1 cut(s)	61
NdeII	GATC	1 cut(s)	284
NlaIII	CATG	1 cut(s)	65
NsiI	ATGCAT	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	3 cut(s)	29, 105, 130
PleI	GAGTC	3 cut(s)	16, 27, 62
PpsI	GAGTC	3 cut(s)	16, 27, 62
PshBI	ATTAAT	1 cut(s)	280
PsiI	TTATAA	1 cut(s)	40
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SaqAI	TTAA	2 cut(s)	280, 299
SatI	GCNGC	3 cut(s)	28, 104, 129
Sau3AI	GATC	1 cut(s)	284
SchI	GAGTC	3 cut(s)	16, 27, 63
SetI	ASST	6 cut(s)	73, 82, 112, 229, 269, 274
SsiI	CCGC	4 cut(s)	48, 103, 129, 193
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	1 cut(s)	174
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	256
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	2 cut(s)	106, 131
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	280, 299
Tru9I	TTAA	2 cut(s)	280, 299
TscAI	CASTG	1 cut(s)	192
TseI	GCWGC	1 cut(s)	27
TspDTI	ATGAA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	192
VspI	ATTAAT	1 cut(s)	280
ZraI	GACGTC	1 cut(s)	110
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.