Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007860.1

Orthogroup ID

OG0010621

Physical Location & Seq

Genomic Coordinates Reverse (-)

20662 .. 21072

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007860.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgggacgcgtccgcaccaagaccgtgaagaagtcctcctggcaggtgatcgagcggtactactcgcgcatgaccctcgacttccacacgaacaagaaggtcctggaggatctgcaaaaatcccgtcgacgcctccgcaacaagatcgccggattctcgacccatctcatgaatcgcatccagaagggccccgtccgcatcatctccctcaagctccaggaggaggagcgcgagcgccgcatggactttgtccccgacgagtccgccatgaagaccgacgagatcgccgtcgacaaggtaaccctcgacatgctcactgctctcggcatggcggatattcccggagtcaagaaggtggatccctctgatctccagactgcgccgatcaggtactggtgtgaactggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

136

Amino Acids

15.92

Weight (kDa)

9.78

Isoelectric Point (pI)

45.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010621)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0460781 RchiOBHm_Chr5g0017161 RchiOBHm_Chr7g0200781
rosa_multiflora	Rmu_sc0001384.1_g000001 Rmu_sc0007034.1_g000019 Rmu_sc0007860.1_g000003 Rmu_sc0015544.1_g000001 Rmu_ssc0000110.1_g000005
rosa_samantha	Rh1AG371700 Rh1BG209900 Rh1CG165000 Rh5AG132300 Rh5CG139500 Rh6AG269000 Rh7CG324300
rosa_wichuraiana	Rw0G003350 Rw5G044880 Rw6G031720 Rw6G043180 Rw7G022940 Rw7G030970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	34
Acc36I	ACCTGC	1 cut(s)	34
AccBSI	CCGCTC	1 cut(s)	55
AccI	GTMKAC	2 cut(s)	127, 291
AccII	CGCG	3 cut(s)	9, 67, 231
AciI	CCGC	7 cut(s)	13, 55, 136, 196, 238, 264, 332
AclWI	GGATC	3 cut(s)	117, 353, 366
AcyI	GRCGYC	1 cut(s)	130
AfaI	GTAC	2 cut(s)	59, 392
AfiI	CCNNNNNNNGG	1 cut(s)	223
AflIII	ACRYGT	1 cut(s)	7
AjnI	CCWGG	3 cut(s)	38, 102, 216
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
AlwI	GGATC	3 cut(s)	117, 353, 366
AlwNI	CAGNNNCTG	1 cut(s)	393
AoxI	GGCC	1 cut(s)	187
ApaI	GGGCCC	1 cut(s)	191
ArsI	GACNNNNNNTTYG	2 cut(s)	109, 141
AspLEI	GCGC	4 cut(s)	69, 231, 237, 382
AspS9I	GGNCC	3 cut(s)	100, 187, 188
AsuC2I	CCSGG	1 cut(s)	342
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	100
BaeGI	GKGCMC	1 cut(s)	191
BaeI	ACNNNNGTAYC	1 cut(s)	382
BamHI	GGATCC	1 cut(s)	358
BanII	GRGCYC	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	278
BccI	CCATC	1 cut(s)	171
BceAI	ACGGC	1 cut(s)	272
BcgI	CGANNNNNNTGC	4 cut(s)	58, 92, 127, 161
BciT130I	CCWGG	3 cut(s)	40, 104, 218
BcnI	CCSGG	1 cut(s)	342
BfoI	RGCGCY	1 cut(s)	238
BfuAI	ACCTGC	1 cut(s)	34
BisI	GCNGC	1 cut(s)	238
BlsI	GCNGC	1 cut(s)	239
Bme1390I	CCNGG	4 cut(s)	40, 104, 218, 342
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	3 cut(s)	100, 187, 188
BmiI	GGNNCC	3 cut(s)	189, 190, 360
BmrFI	CCNGG	4 cut(s)	40, 104, 218, 342
BmsI	GCATC	2 cut(s)	186, 207
BpiI	GAAGAC	1 cut(s)	278
BpmI	CTGGAG	3 cut(s)	125, 200, 356
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	342
BsaHI	GRCGYC	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	2 cut(s)	398, 408
BseBI	CCWGG	3 cut(s)	40, 104, 218
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseNI	ACTGG	2 cut(s)	398, 408
BseRI	GAGGAG	2 cut(s)	236, 239
BseSI	GKGCMC	1 cut(s)	191
Bsh1236I	CGCG	3 cut(s)	9, 67, 231
BshFI	GGCC	1 cut(s)	189
BsiSI	CCGG	2 cut(s)	150, 342
BslFI	GGGAC	2 cut(s)	18, 236
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmFI	GGGAC	2 cut(s)	18, 236
BsnI	GGCC	1 cut(s)	189
Bsp120I	GGGCCC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	7 cut(s)	48, 109, 144, 282, 358, 367, 384
BspACI	CCGC	7 cut(s)	13, 55, 136, 196, 238, 264, 332
BspANI	GGCC	1 cut(s)	189
BspFNI	CGCG	3 cut(s)	9, 67, 231
BspHI	TCATGA	1 cut(s)	168
BspLI	GGNNCC	3 cut(s)	189, 190, 360
BspMI	ACCTGC	1 cut(s)	34
BspPI	GGATC	3 cut(s)	117, 353, 366
BsrBI	CCGCTC	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	398, 408
BssMI	GATC	7 cut(s)	48, 109, 144, 282, 358, 367, 384
BssNI	GRCGYC	1 cut(s)	130
Bst2UI	CCWGG	3 cut(s)	40, 104, 218
Bst4CI	ACNGT	1 cut(s)	25
BstACI	GRCGYC	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	233
BstEII	GGTNACC	1 cut(s)	298
BstF5I	GGATG	1 cut(s)	177
BstFNI	CGCG	3 cut(s)	9, 67, 231
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	4 cut(s)	69, 231, 237, 382
BstKTI	GATC	7 cut(s)	51, 112, 147, 285, 361, 370, 387
BstMBI	GATC	7 cut(s)	48, 109, 144, 282, 358, 367, 384
BstMWI	GCNNNNNNNGC	2 cut(s)	195, 237
BstNI	CCWGG	3 cut(s)	40, 104, 218
BstNSI	RCATGY	1 cut(s)	313
BstPI	GGTNACC	1 cut(s)	298
BstSCI	CCNGG	4 cut(s)	38, 102, 216, 340
BstSLI	GKGCMC	1 cut(s)	191
BstUI	CGCG	3 cut(s)	9, 67, 231
BstV2I	GAAGAC	1 cut(s)	278
BstX2I	RGATCY	2 cut(s)	109, 358
BstYI	RGATCY	2 cut(s)	109, 358
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	177
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	315
BveI	ACCTGC	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	233
CaiI	CAGNNNCTG	1 cut(s)	393
CciI	TCATGA	1 cut(s)	168
CfoI	GCGC	4 cut(s)	69, 231, 237, 382
Cfr13I	GGNCC	3 cut(s)	100, 187, 188
CseI	GACGC	2 cut(s)	15, 138
Csp6I	GTAC	2 cut(s)	58, 391
CviAII	CATG	6 cut(s)	70, 169, 241, 268, 310, 328
CviJI	RGCY	2 cut(s)	189, 214
CviKI_1	RGCY	2 cut(s)	189, 214
CviQI	GTAC	2 cut(s)	58, 391
DpnI	GATC	7 cut(s)	50, 111, 146, 284, 360, 369, 386
DpnII	GATC	7 cut(s)	48, 109, 144, 282, 358, 367, 384
EciI	GGCGGA	2 cut(s)	253, 347
Eco24I	GRGCYC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	100
Eco91I	GGTNACC	1 cut(s)	298
EcoO109I	RGGNCCY	3 cut(s)	100, 187, 188
EcoO65I	GGTNACC	1 cut(s)	298
EcoRII	CCWGG	3 cut(s)	38, 102, 216
EcoT38I	GRGCYC	1 cut(s)	191
FaeI	CATG	6 cut(s)	73, 172, 244, 271, 313, 331
FaiI	YATR	6 cut(s)	71, 170, 242, 269, 311, 329
FaqI	GGGAC	2 cut(s)	18, 236
FatI	CATG	6 cut(s)	69, 168, 240, 267, 309, 327
FblI	GTMKAC	2 cut(s)	127, 291
Fnu4HI	GCNGC	1 cut(s)	238
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	238
GlaI	GCGC	4 cut(s)	68, 230, 236, 381
GluI	GCNGC	1 cut(s)	238
GsuI	CTGGAG	3 cut(s)	125, 200, 356
HaeII	RGCGCY	1 cut(s)	238
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	2 cut(s)	150, 342
HgaI	GACGC	2 cut(s)	15, 138
HhaI	GCGC	4 cut(s)	69, 231, 237, 382
Hin1I	GRCGYC	1 cut(s)	130
Hin1II	CATG	6 cut(s)	73, 172, 244, 271, 313, 331
Hin6I	GCGC	4 cut(s)	67, 229, 235, 380
HinP1I	GCGC	4 cut(s)	67, 229, 235, 380
HincII	GTYRAC	2 cut(s)	128, 292
HindII	GTYRAC	2 cut(s)	128, 292
HinfI	GANTC	4 cut(s)	153, 172, 260, 345
HpaII	CCGG	2 cut(s)	150, 342
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	3 cut(s)	128, 292, 401
Hpy188I	TCNGA	1 cut(s)	367
Hpy188III	TCNNGA	5 cut(s)	157, 169, 181, 349, 373
Hpy8I	GTNNAC	3 cut(s)	128, 292, 401
Hpy99I	CGWCG	5 cut(s)	129, 132, 260, 281, 293
HpyAV	CCTTC	3 cut(s)	91, 178, 346
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	2 cut(s)	195, 237
Hsp92I	GRCGYC	1 cut(s)	130
Hsp92II	CATG	6 cut(s)	73, 172, 244, 271, 313, 331
HspAI	GCGC	4 cut(s)	67, 229, 235, 380
Kzo9I	GATC	7 cut(s)	48, 109, 144, 282, 358, 367, 384
LmnI	GCTCC	2 cut(s)	219, 226
LweI	GCATC	2 cut(s)	186, 207
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	7 cut(s)	50, 111, 146, 284, 360, 369, 386
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	7 cut(s)	48, 109, 144, 282, 358, 367, 384
MboII	GAAGA	2 cut(s)	40, 283
MflI	RGATCY	2 cut(s)	109, 358
MhlI	GDGCHC	1 cut(s)	191
MluI	ACGCGT	1 cut(s)	7
MlyI	GAGTC	2 cut(s)	269, 354
MnlI	CCTC	9 cut(s)	46, 86, 100, 143, 214, 217, 218, 314, 373
MspI	CCGG	2 cut(s)	150, 342
MspR9I	CCNGG	4 cut(s)	40, 104, 218, 342
MvaI	CCWGG	3 cut(s)	40, 104, 218
MvnI	CGCG	3 cut(s)	9, 67, 231
MwoI	GCNNNNNNNGC	2 cut(s)	195, 237
NciI	CCSGG	1 cut(s)	342
NdeII	GATC	7 cut(s)	48, 109, 144, 282, 358, 367, 384
NlaIII	CATG	6 cut(s)	73, 172, 244, 271, 313, 331
NlaIV	GGNNCC	3 cut(s)	189, 190, 360
NmeAIII	GCCGAG	1 cut(s)	303
NspI	RCATGY	1 cut(s)	313
PagI	TCATGA	1 cut(s)	168
PaqCI	CACCTGC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	153, 172
PflFI	GACNNNGTC	1 cut(s)	248
PfoI	TCCNGGA	3 cut(s)	102, 216, 340
PkrI	GCNGC	1 cut(s)	239
PleI	GAGTC	2 cut(s)	268, 353
PpsI	GAGTC	2 cut(s)	268, 353
PpuMI	RGGWCCY	1 cut(s)	100
Psp5II	RGGWCCY	1 cut(s)	100
Psp6I	CCWGG	3 cut(s)	38, 102, 216
PspEI	GGTNACC	1 cut(s)	298
PspGI	CCWGG	3 cut(s)	38, 102, 216
PspN4I	GGNNCC	3 cut(s)	189, 190, 360
PspOMI	GGGCCC	1 cut(s)	187
PspPI	GGNCC	3 cut(s)	100, 187, 188
PspPPI	RGGWCCY	1 cut(s)	100
PstNI	CAGNNNCTG	1 cut(s)	393
PsuI	RGATCY	2 cut(s)	109, 358
PsyI	GACNNNGTC	1 cut(s)	248
RsaI	GTAC	2 cut(s)	59, 392
RsaNI	GTAC	2 cut(s)	58, 391
SalI	GTCGAC	2 cut(s)	126, 290
SatI	GCNGC	1 cut(s)	238
Sau3AI	GATC	7 cut(s)	48, 109, 144, 282, 358, 367, 384
Sau96I	GGNCC	3 cut(s)	100, 187, 188
SchI	GAGTC	2 cut(s)	269, 354
ScrFI	CCNGG	4 cut(s)	40, 104, 218, 342
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	6 cut(s)	48, 102, 216, 300, 357, 392
SfaNI	GCATC	2 cut(s)	186, 207
SgrDI	CGTCGACG	1 cut(s)	126
SinI	GGWCC	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SsiI	CCGC	7 cut(s)	13, 55, 136, 196, 238, 264, 332
StyD4I	CCNGG	4 cut(s)	38, 102, 216, 340
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	6 cut(s)	51, 78, 127, 158, 291, 306
TaqII	GACCGA	1 cut(s)	290
TauI	GCSGC	1 cut(s)	240
TfiI	GAWTC	2 cut(s)	153, 172
TscAI	CASTG	1 cut(s)	322
TspDTI	ATGAA	2 cut(s)	185, 284
TspRI	CASTG	1 cut(s)	322
Tth111I	GACNNNGTC	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	100
XceI	RCATGY	1 cut(s)	313
XmiI	GTMKAC	2 cut(s)	127, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.