Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0010621

Physical Location & Seq

Genomic Coordinates Reverse (-)

66553410 .. 66553822

Gene Structure 413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G043180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGGACGCGTCCGCACCAAGACCGTGAAGAAGTCCTCCTGGCAGGTGATCGAGCGGTACTACTCGCGCATGACCCTCGACTTCCACACCAACAAGAAGCGCCTCCGCAACAAGATCGCCGGATTCTCGACCCATCTCATGAAGCACATCCAGAAGGGCCCCGTCCGCGTCATCTCCCTCAAGCTCCAGGAGGAGGAGCGCGAGCGCCGCATGGACTTTGTCCCCGACGAGTTCGCCATGAAGACCGACGAGATCGCCGTCGACAAGGTGACCCTCGACATGCTCACTGCTCTCGGCATGGCGGATATTCCCGGAGTCAAGAAGGTGGATCCCTCTGATCTCCAGACTGCGCCGATCGGGTACGGCCCCAGGAGGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

126

Amino Acids

14.64

Weight (kDa)

9.94

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17e	PF00833	1 - 110	4.2e-43	Ribosomal S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010621)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0460781 RchiOBHm_Chr5g0017161 RchiOBHm_Chr7g0200781
rosa_multiflora	Rmu_sc0001384.1_g000001 Rmu_sc0007034.1_g000019 Rmu_sc0007860.1_g000003 Rmu_sc0015544.1_g000001 Rmu_ssc0000110.1_g000005
rosa_samantha	Rh1AG371700 Rh1BG209900 Rh1CG165000 Rh5AG132300 Rh5CG139500 Rh6AG269000 Rh7CG324300
rosa_wichuraiana	Rw0G003350 Rw5G044880 Rw6G031720 Rw6G043180 Rw7G022940 Rw7G030970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	34
Acc36I	ACCTGC	1 cut(s)	34
AccBSI	CCGCTC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	261
AccII	CGCG	4 cut(s)	9, 67, 168, 201
AciI	CCGC	6 cut(s)	13, 55, 106, 166, 208, 302
AclWI	GGATC	2 cut(s)	323, 336
AfaI	GTAC	3 cut(s)	59, 362, 377
AfiI	CCNNNNNNNGG	1 cut(s)	193
AflIII	ACRYGT	1 cut(s)	7
AjnI	CCWGG	3 cut(s)	38, 186, 368
AluBI	AGCT	1 cut(s)	184
AluI	AGCT	1 cut(s)	184
AlwI	GGATC	2 cut(s)	323, 336
AoxI	GGCC	2 cut(s)	157, 364
ApaI	GGGCCC	1 cut(s)	161
AspLEI	GCGC	5 cut(s)	69, 102, 201, 207, 352
AspS9I	GGNCC	3 cut(s)	157, 158, 365
AsuC2I	CCSGG	1 cut(s)	312
AsuHPI	GGTGA	2 cut(s)	58, 280
BaeGI	GKGCMC	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	328
BanII	GRGCYC	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	248
BccI	CCATC	1 cut(s)	141
BceAI	ACGGC	2 cut(s)	242, 379
BcgI	CGANNNNNNTGC	4 cut(s)	58, 92, 97, 131
BciT130I	CCWGG	3 cut(s)	40, 188, 370
BcnI	CCSGG	1 cut(s)	312
BfaI	CTAG	1 cut(s)	379
BfoI	RGCGCY	2 cut(s)	103, 208
BfuAI	ACCTGC	1 cut(s)	34
BisI	GCNGC	1 cut(s)	208
BlsI	GCNGC	1 cut(s)	209
Bme1390I	CCNGG	4 cut(s)	40, 188, 312, 370
BmgT120I	GGNCC	3 cut(s)	157, 158, 365
BmiI	GGNNCC	4 cut(s)	159, 160, 330, 367
BmrFI	CCNGG	4 cut(s)	40, 188, 312, 370
BpiI	GAAGAC	1 cut(s)	248
BpmI	CTGGAG	2 cut(s)	170, 326
BpuEI	CTTGAG	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
BseBI	CCWGG	3 cut(s)	40, 188, 370
BseDI	CCNNGG	1 cut(s)	368
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseRI	GAGGAG	2 cut(s)	206, 209
BseSI	GKGCMC	1 cut(s)	161
Bsh1236I	CGCG	4 cut(s)	9, 67, 168, 201
Bsh1285I	CGRYCG	1 cut(s)	357
BshFI	GGCC	2 cut(s)	159, 366
BsiEI	CGRYCG	1 cut(s)	357
BsiSI	CCGG	2 cut(s)	120, 312
BslFI	GGGAC	2 cut(s)	18, 206
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmFI	GGGAC	2 cut(s)	18, 206
BsnI	GGCC	2 cut(s)	159, 366
Bsp120I	GGGCCC	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	6 cut(s)	48, 114, 252, 328, 337, 354
BspACI	CCGC	6 cut(s)	13, 55, 106, 166, 208, 302
BspANI	GGCC	2 cut(s)	159, 366
BspFNI	CGCG	4 cut(s)	9, 67, 168, 201
BspHI	TCATGA	1 cut(s)	138
BspLI	GGNNCC	4 cut(s)	159, 160, 330, 367
BspMI	ACCTGC	1 cut(s)	34
BspPI	GGATC	2 cut(s)	323, 336
BsrBI	CCGCTC	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	368
BssMI	GATC	6 cut(s)	48, 114, 252, 328, 337, 354
Bst2UI	CCWGG	3 cut(s)	40, 188, 370
Bst4CI	ACNGT	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	203
BstEII	GGTNACC	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	147
BstFNI	CGCG	4 cut(s)	9, 67, 168, 201
BstH2I	RGCGCY	2 cut(s)	103, 208
BstHHI	GCGC	5 cut(s)	69, 102, 201, 207, 352
BstKTI	GATC	6 cut(s)	51, 117, 255, 331, 340, 357
BstMBI	GATC	6 cut(s)	48, 114, 252, 328, 337, 354
BstMCI	CGRYCG	1 cut(s)	357
BstMWI	GCNNNNNNNGC	2 cut(s)	165, 207
BstNI	CCWGG	3 cut(s)	40, 188, 370
BstNSI	RCATGY	1 cut(s)	283
BstPI	GGTNACC	1 cut(s)	268
BstSCI	CCNGG	4 cut(s)	38, 186, 310, 368
BstSLI	GKGCMC	1 cut(s)	161
BstUI	CGCG	4 cut(s)	9, 67, 168, 201
BstV2I	GAAGAC	1 cut(s)	248
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BsuRI	GGCC	2 cut(s)	159, 366
BtsCI	GGATG	1 cut(s)	147
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	285
BveI	ACCTGC	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	203
CciI	TCATGA	1 cut(s)	138
CfoI	GCGC	5 cut(s)	69, 102, 201, 207, 352
Cfr13I	GGNCC	3 cut(s)	157, 158, 365
CseI	GACGC	2 cut(s)	15, 157
Csp6I	GTAC	3 cut(s)	58, 361, 376
CviAII	CATG	6 cut(s)	70, 139, 211, 238, 280, 298
CviJI	RGCY	3 cut(s)	159, 184, 366
CviKI_1	RGCY	3 cut(s)	159, 184, 366
CviQI	GTAC	3 cut(s)	58, 361, 376
DpnI	GATC	6 cut(s)	50, 116, 254, 330, 339, 356
DpnII	GATC	6 cut(s)	48, 114, 252, 328, 337, 354
EciI	GGCGGA	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	161
Eco91I	GGTNACC	1 cut(s)	268
EcoO109I	RGGNCCY	2 cut(s)	157, 158
EcoO65I	GGTNACC	1 cut(s)	268
EcoRII	CCWGG	3 cut(s)	38, 186, 368
EcoT38I	GRGCYC	1 cut(s)	161
FaeI	CATG	6 cut(s)	73, 142, 214, 241, 283, 301
FaiI	YATR	6 cut(s)	71, 140, 212, 239, 281, 299
FaqI	GGGAC	2 cut(s)	18, 206
FatI	CATG	6 cut(s)	69, 138, 210, 237, 279, 297
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	208
FokI	GGATG	1 cut(s)	134
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	208
FspBI	CTAG	1 cut(s)	379
GlaI	GCGC	5 cut(s)	68, 101, 200, 206, 351
GluI	GCNGC	1 cut(s)	208
GsuI	CTGGAG	2 cut(s)	170, 326
HaeII	RGCGCY	2 cut(s)	103, 208
HaeIII	GGCC	2 cut(s)	159, 366
HapII	CCGG	2 cut(s)	120, 312
HgaI	GACGC	2 cut(s)	15, 157
HhaI	GCGC	5 cut(s)	69, 102, 201, 207, 352
Hin1II	CATG	6 cut(s)	73, 142, 214, 241, 283, 301
Hin6I	GCGC	5 cut(s)	67, 100, 199, 205, 350
HinP1I	GCGC	5 cut(s)	67, 100, 199, 205, 350
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	2 cut(s)	123, 315
HpaII	CCGG	2 cut(s)	120, 312
HphI	GGTGA	2 cut(s)	58, 280
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	5 cut(s)	127, 139, 151, 319, 343
Hpy8I	GTNNAC	1 cut(s)	262
Hpy99I	CGWCG	3 cut(s)	230, 251, 263
HpyAV	CCTTC	2 cut(s)	148, 316
HpyCH4III	ACNGT	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	2 cut(s)	165, 207
Hsp92II	CATG	6 cut(s)	73, 142, 214, 241, 283, 301
HspAI	GCGC	5 cut(s)	67, 100, 199, 205, 350
Kzo9I	GATC	6 cut(s)	48, 114, 252, 328, 337, 354
LmnI	GCTCC	2 cut(s)	189, 196
MaeI	CTAG	1 cut(s)	379
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	6 cut(s)	50, 116, 254, 330, 339, 356
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	6 cut(s)	48, 114, 252, 328, 337, 354
MboII	GAAGA	2 cut(s)	40, 253
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	1 cut(s)	161
MluI	ACGCGT	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	324
MnlI	CCTC	9 cut(s)	46, 86, 113, 184, 187, 188, 284, 343, 366
MspI	CCGG	2 cut(s)	120, 312
MspR9I	CCNGG	4 cut(s)	40, 188, 312, 370
MvaI	CCWGG	3 cut(s)	40, 188, 370
MvnI	CGCG	4 cut(s)	9, 67, 168, 201
MwoI	GCNNNNNNNGC	2 cut(s)	165, 207
NciI	CCSGG	1 cut(s)	312
NdeII	GATC	6 cut(s)	48, 114, 252, 328, 337, 354
NlaIII	CATG	6 cut(s)	73, 142, 214, 241, 283, 301
NlaIV	GGNNCC	4 cut(s)	159, 160, 330, 367
NmeAIII	GCCGAG	1 cut(s)	273
NmuCI	GTSAC	1 cut(s)	268
NspI	RCATGY	1 cut(s)	283
PagI	TCATGA	1 cut(s)	138
PaqCI	CACCTGC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	123
PflFI	GACNNNGTC	1 cut(s)	218
PfoI	TCCNGGA	2 cut(s)	186, 310
PkrI	GCNGC	1 cut(s)	209
Ple19I	CGATCG	1 cut(s)	357
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
Psp6I	CCWGG	3 cut(s)	38, 186, 368
PspEI	GGTNACC	1 cut(s)	268
PspGI	CCWGG	3 cut(s)	38, 186, 368
PspN4I	GGNNCC	4 cut(s)	159, 160, 330, 367
PspOMI	GGGCCC	1 cut(s)	157
PspPI	GGNCC	3 cut(s)	157, 158, 365
PsuI	RGATCY	1 cut(s)	328
PsyI	GACNNNGTC	1 cut(s)	218
PvuI	CGATCG	1 cut(s)	357
RsaI	GTAC	3 cut(s)	59, 362, 377
RsaNI	GTAC	3 cut(s)	58, 361, 376
SalI	GTCGAC	1 cut(s)	260
SatI	GCNGC	1 cut(s)	208
Sau3AI	GATC	6 cut(s)	48, 114, 252, 328, 337, 354
Sau96I	GGNCC	3 cut(s)	157, 158, 365
SchI	GAGTC	1 cut(s)	324
ScrFI	CCNGG	4 cut(s)	40, 188, 312, 370
SduI	GDGCHC	1 cut(s)	161
SetI	ASST	5 cut(s)	48, 186, 270, 327, 377
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
SsiI	CCGC	6 cut(s)	13, 55, 106, 166, 208, 302
SspMI	CTAG	1 cut(s)	379
StyD4I	CCNGG	4 cut(s)	38, 186, 310, 368
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	5 cut(s)	51, 78, 128, 261, 276
TaqII	GACCGA	1 cut(s)	260
TauI	GCSGC	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	123
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	2 cut(s)	155, 254
TspRI	CASTG	1 cut(s)	292
Tth111I	GACNNNGTC	1 cut(s)	218
XceI	RCATGY	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.