Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0010621

Physical Location & Seq

Genomic Coordinates Forward (+)

55804635 .. 55805047

Gene Structure 413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G031720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGGACGAGTCCGCACCAAGACCGTGAAGAAGTCCTCCTGGCAGGTGATCGAGCGGTACTACTCGCGCATGACCATCGACTTCCACACCAACAAGAAGCGCATCCAGAAGGGCCCCGTCCGCGTCATCTCCCTCAAGCTCCAGGAGGAGGAGCGCGAGCGCCGCATGGACTTTGTCCCCGACGAGTTCGCCATGAAGACCGACGAGATCGCCGTCGACAAGGTGACCCTCGACATGCTCACTGCTCTCGGCATGGCGGATATTCCCGGAGTCAAGAAGGTGGATCCCTCTGATCTCCAGACTGCGCCGATCGGGTACGGCCCCAGGAGGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

111

Amino Acids

12.9

Weight (kDa)

9.69

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17e	PF00833	1 - 33	2.1e-13	Ribosomal S17
Ribosomal_S17e	PF00833	33 - 95	3.6e-18	Ribosomal S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010621)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0460781 RchiOBHm_Chr5g0017161 RchiOBHm_Chr7g0200781
rosa_multiflora	Rmu_sc0001384.1_g000001 Rmu_sc0007034.1_g000019 Rmu_sc0007860.1_g000003 Rmu_sc0015544.1_g000001 Rmu_ssc0000110.1_g000005
rosa_samantha	Rh1AG371700 Rh1BG209900 Rh1CG165000 Rh5AG132300 Rh5CG139500 Rh6AG269000 Rh7CG324300
rosa_wichuraiana	Rw0G003350 Rw5G044880 Rw6G031720 Rw6G043180 Rw7G022940 Rw7G030970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	34
Acc36I	ACCTGC	1 cut(s)	34
AccBSI	CCGCTC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	3 cut(s)	67, 123, 156
AciI	CCGC	5 cut(s)	13, 55, 121, 163, 257
AclWI	GGATC	2 cut(s)	278, 291
AfaI	GTAC	3 cut(s)	59, 317, 332
AfiI	CCNNNNNNNGG	1 cut(s)	148
AjnI	CCWGG	3 cut(s)	38, 141, 323
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
AlwI	GGATC	2 cut(s)	278, 291
AoxI	GGCC	2 cut(s)	112, 319
ApaI	GGGCCC	1 cut(s)	116
AspLEI	GCGC	5 cut(s)	69, 102, 156, 162, 307
AspS9I	GGNCC	3 cut(s)	112, 113, 320
AsuC2I	CCSGG	1 cut(s)	267
AsuHPI	GGTGA	2 cut(s)	58, 235
BaeGI	GKGCMC	1 cut(s)	116
BamHI	GGATCC	1 cut(s)	283
BanII	GRGCYC	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	203
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	2 cut(s)	197, 334
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciT130I	CCWGG	3 cut(s)	40, 143, 325
BcnI	CCSGG	1 cut(s)	267
BfaI	CTAG	1 cut(s)	334
BfoI	RGCGCY	1 cut(s)	163
BfuAI	ACCTGC	1 cut(s)	34
BisI	GCNGC	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	164
Bme1390I	CCNGG	4 cut(s)	40, 143, 267, 325
BmgT120I	GGNCC	3 cut(s)	112, 113, 320
BmiI	GGNNCC	4 cut(s)	114, 115, 285, 322
BmrFI	CCNGG	4 cut(s)	40, 143, 267, 325
BmsI	GCATC	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	203
BpmI	CTGGAG	2 cut(s)	125, 281
BpuEI	CTTGAG	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
BseBI	CCWGG	3 cut(s)	40, 143, 325
BseDI	CCNNGG	1 cut(s)	323
BseGI	GGATG	1 cut(s)	102
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseRI	GAGGAG	2 cut(s)	161, 164
BseSI	GKGCMC	1 cut(s)	116
Bsh1236I	CGCG	3 cut(s)	67, 123, 156
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	2 cut(s)	114, 321
BsiEI	CGRYCG	1 cut(s)	312
BsiSI	CCGG	1 cut(s)	267
BslFI	GGGAC	2 cut(s)	18, 161
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmFI	GGGAC	2 cut(s)	18, 161
BsnI	GGCC	2 cut(s)	114, 321
Bsp120I	GGGCCC	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	5 cut(s)	48, 207, 283, 292, 309
BspACI	CCGC	5 cut(s)	13, 55, 121, 163, 257
BspANI	GGCC	2 cut(s)	114, 321
BspFNI	CGCG	3 cut(s)	67, 123, 156
BspLI	GGNNCC	4 cut(s)	114, 115, 285, 322
BspMI	ACCTGC	1 cut(s)	34
BspPI	GGATC	2 cut(s)	278, 291
BsrBI	CCGCTC	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	323
BssMI	GATC	5 cut(s)	48, 207, 283, 292, 309
Bst2UI	CCWGG	3 cut(s)	40, 143, 325
Bst4CI	ACNGT	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	158
BstEII	GGTNACC	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	102
BstFNI	CGCG	3 cut(s)	67, 123, 156
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	5 cut(s)	69, 102, 156, 162, 307
BstKTI	GATC	5 cut(s)	51, 210, 286, 295, 312
BstMBI	GATC	5 cut(s)	48, 207, 283, 292, 309
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 162
BstNI	CCWGG	3 cut(s)	40, 143, 325
BstNSI	RCATGY	1 cut(s)	238
BstPI	GGTNACC	1 cut(s)	223
BstSCI	CCNGG	4 cut(s)	38, 141, 265, 323
BstSLI	GKGCMC	1 cut(s)	116
BstUI	CGCG	3 cut(s)	67, 123, 156
BstV2I	GAAGAC	1 cut(s)	203
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	114, 321
BtsCI	GGATG	1 cut(s)	102
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	240
BveI	ACCTGC	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	158
CfoI	GCGC	5 cut(s)	69, 102, 156, 162, 307
Cfr13I	GGNCC	3 cut(s)	112, 113, 320
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	3 cut(s)	58, 316, 331
CviAII	CATG	5 cut(s)	70, 166, 193, 235, 253
CviJI	RGCY	3 cut(s)	114, 139, 321
CviKI_1	RGCY	3 cut(s)	114, 139, 321
CviQI	GTAC	3 cut(s)	58, 316, 331
DpnI	GATC	5 cut(s)	50, 209, 285, 294, 311
DpnII	GATC	5 cut(s)	48, 207, 283, 292, 309
EciI	GGCGGA	1 cut(s)	272
Eco24I	GRGCYC	1 cut(s)	116
Eco91I	GGTNACC	1 cut(s)	223
EcoO109I	RGGNCCY	2 cut(s)	112, 113
EcoO65I	GGTNACC	1 cut(s)	223
EcoRII	CCWGG	3 cut(s)	38, 141, 323
EcoT38I	GRGCYC	1 cut(s)	116
FaeI	CATG	5 cut(s)	73, 169, 196, 238, 256
FaiI	YATR	5 cut(s)	71, 167, 194, 236, 254
FaqI	GGGAC	2 cut(s)	18, 161
FatI	CATG	5 cut(s)	69, 165, 192, 234, 252
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	1 cut(s)	163
FokI	GGATG	1 cut(s)	89
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	163
FspBI	CTAG	1 cut(s)	334
GlaI	GCGC	5 cut(s)	68, 101, 155, 161, 306
GluI	GCNGC	1 cut(s)	163
GsuI	CTGGAG	2 cut(s)	125, 281
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	2 cut(s)	114, 321
HapII	CCGG	1 cut(s)	267
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	5 cut(s)	69, 102, 156, 162, 307
Hin1II	CATG	5 cut(s)	73, 169, 196, 238, 256
Hin6I	GCGC	5 cut(s)	67, 100, 154, 160, 305
HinP1I	GCGC	5 cut(s)	67, 100, 154, 160, 305
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	2 cut(s)	9, 270
HpaII	CCGG	1 cut(s)	267
HphI	GGTGA	2 cut(s)	58, 235
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	3 cut(s)	106, 274, 298
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	3 cut(s)	185, 206, 218
HpyAV	CCTTC	2 cut(s)	103, 271
HpyCH4III	ACNGT	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 162
Hsp92II	CATG	5 cut(s)	73, 169, 196, 238, 256
HspAI	GCGC	5 cut(s)	67, 100, 154, 160, 305
Kzo9I	GATC	5 cut(s)	48, 207, 283, 292, 309
LmnI	GCTCC	2 cut(s)	144, 151
LpnPI	CCDG	9 cut(s)	25, 29, 52, 119, 128, 155, 280, 310, 311
LweI	GCATC	1 cut(s)	111
MaeI	CTAG	1 cut(s)	334
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	5 cut(s)	50, 209, 285, 294, 311
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	5 cut(s)	48, 207, 283, 292, 309
MboII	GAAGA	2 cut(s)	40, 208
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	1 cut(s)	116
MlyI	GAGTC	2 cut(s)	18, 279
MnlI	CCTC	7 cut(s)	46, 139, 142, 143, 239, 298, 321
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	4 cut(s)	40, 143, 267, 325
MvaI	CCWGG	3 cut(s)	40, 143, 325
MvnI	CGCG	3 cut(s)	67, 123, 156
MwoI	GCNNNNNNNGC	2 cut(s)	120, 162
NciI	CCSGG	1 cut(s)	267
NdeII	GATC	5 cut(s)	48, 207, 283, 292, 309
NlaIII	CATG	5 cut(s)	73, 169, 196, 238, 256
NlaIV	GGNNCC	4 cut(s)	114, 115, 285, 322
NmeAIII	GCCGAG	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	238
PaqCI	CACCTGC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PflFI	GACNNNGTC	1 cut(s)	173
PfoI	TCCNGGA	2 cut(s)	141, 265
PkrI	GCNGC	1 cut(s)	164
Ple19I	CGATCG	1 cut(s)	312
PleI	GAGTC	2 cut(s)	17, 278
PpsI	GAGTC	2 cut(s)	17, 278
Psp6I	CCWGG	3 cut(s)	38, 141, 323
PspEI	GGTNACC	1 cut(s)	223
PspGI	CCWGG	3 cut(s)	38, 141, 323
PspN4I	GGNNCC	4 cut(s)	114, 115, 285, 322
PspOMI	GGGCCC	1 cut(s)	112
PspPI	GGNCC	3 cut(s)	112, 113, 320
PsuI	RGATCY	1 cut(s)	283
PsyI	GACNNNGTC	1 cut(s)	173
PvuI	CGATCG	1 cut(s)	312
RsaI	GTAC	3 cut(s)	59, 317, 332
RsaNI	GTAC	3 cut(s)	58, 316, 331
SalI	GTCGAC	1 cut(s)	215
SatI	GCNGC	1 cut(s)	163
Sau3AI	GATC	5 cut(s)	48, 207, 283, 292, 309
Sau96I	GGNCC	3 cut(s)	112, 113, 320
SchI	GAGTC	2 cut(s)	18, 279
ScrFI	CCNGG	4 cut(s)	40, 143, 267, 325
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	5 cut(s)	48, 141, 225, 282, 332
SfaNI	GCATC	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SsiI	CCGC	5 cut(s)	13, 55, 121, 163, 257
SspMI	CTAG	1 cut(s)	334
StyD4I	CCNGG	4 cut(s)	38, 141, 265, 323
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	4 cut(s)	51, 78, 216, 231
TaqII	GACCGA	1 cut(s)	215
TauI	GCSGC	1 cut(s)	165
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	209
TspRI	CASTG	1 cut(s)	247
Tth111I	GACNNNGTC	1 cut(s)	173
XceI	RCATGY	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.