Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0010621

Physical Location & Seq

Genomic Coordinates Reverse (-)

78598791 .. 78599202

Gene Structure 412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G044880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGGACGCGTCCGCACCAAGACCGTGAAGAAGTCCTCCTGGCAGGTGATCGAGCGGTACTACTCGCGCCTCCGCAACAAGATCGCCGGATTCTCGACCCATCTCATGAAGCGCATCCAGAAGGGGCCCGTCCGCGTCATCTCCCTCAAGCTCCAGGAGGAGGAGCGCGAGCGCCGCATGGACTTTGTCCCCGACGAGTCCGCCATGAAGACCGACGAGATCGCCGTCGACAAGGTGACCCTCGACATGCTCACTGCCCTCGGCATGGCGGATATTCCCGGAGTCAAGAAGGTGGATCCCTCTGATCTCCAGACTGCGCCGATCGGGTACGGCCCCAGGAGGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

115

Amino Acids

13.23

Weight (kDa)

9.93

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17e	PF00833	1 - 25	2.7e-08	Ribosomal S17
Ribosomal_S17e	PF00833	23 - 99	8.2e-30	Ribosomal S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010621)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0460781 RchiOBHm_Chr5g0017161 RchiOBHm_Chr7g0200781
rosa_multiflora	Rmu_sc0001384.1_g000001 Rmu_sc0007034.1_g000019 Rmu_sc0007860.1_g000003 Rmu_sc0015544.1_g000001 Rmu_ssc0000110.1_g000005
rosa_samantha	Rh1AG371700 Rh1BG209900 Rh1CG165000 Rh5AG132300 Rh5CG139500 Rh6AG269000 Rh7CG324300
rosa_wichuraiana	Rw0G003350 Rw5G044880 Rw6G031720 Rw6G043180 Rw7G022940 Rw7G030970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	34
Acc36I	ACCTGC	1 cut(s)	34
AccBSI	CCGCTC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	228
AccII	CGCG	4 cut(s)	9, 67, 135, 168
AciI	CCGC	7 cut(s)	13, 55, 73, 133, 175, 201, 269
AclWI	GGATC	2 cut(s)	290, 303
AfaI	GTAC	3 cut(s)	59, 329, 344
AfiI	CCNNNNNNNGG	2 cut(s)	160, 265
AflIII	ACRYGT	1 cut(s)	7
AjnI	CCWGG	3 cut(s)	38, 153, 335
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
AlwI	GGATC	2 cut(s)	290, 303
AoxI	GGCC	2 cut(s)	125, 331
ApaI	GGGCCC	1 cut(s)	129
AspLEI	GCGC	5 cut(s)	69, 114, 168, 174, 319
AspS9I	GGNCC	3 cut(s)	125, 126, 332
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	2 cut(s)	58, 247
BaeGI	GKGCMC	1 cut(s)	129
BamHI	GGATCC	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	129
BbsI	GAAGAC	1 cut(s)	215
BccI	CCATC	1 cut(s)	108
BceAI	ACGGC	2 cut(s)	209, 346
BcgI	CGANNNNNNTGC	2 cut(s)	64, 98
BciT130I	CCWGG	3 cut(s)	40, 155, 337
BcnI	CCSGG	1 cut(s)	279
BfaI	CTAG	1 cut(s)	346
BfoI	RGCGCY	1 cut(s)	175
BfuAI	ACCTGC	1 cut(s)	34
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
Bme1390I	CCNGG	4 cut(s)	40, 155, 279, 337
BmgT120I	GGNCC	3 cut(s)	125, 126, 332
BmiI	GGNNCC	4 cut(s)	126, 127, 297, 334
BmrFI	CCNGG	4 cut(s)	40, 155, 279, 337
BmsI	GCATC	1 cut(s)	123
BpiI	GAAGAC	1 cut(s)	215
BpmI	CTGGAG	2 cut(s)	137, 293
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	259, 335
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 265
BseBI	CCWGG	3 cut(s)	40, 155, 337
BseDI	CCNNGG	2 cut(s)	259, 335
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	2 cut(s)	160, 265
BseRI	GAGGAG	2 cut(s)	173, 176
BseSI	GKGCMC	1 cut(s)	129
Bsh1236I	CGCG	4 cut(s)	9, 67, 135, 168
Bsh1285I	CGRYCG	1 cut(s)	324
BshFI	GGCC	2 cut(s)	127, 333
BsiEI	CGRYCG	1 cut(s)	324
BsiSI	CCGG	2 cut(s)	87, 279
BslFI	GGGAC	2 cut(s)	18, 173
BslI	CCNNNNNNNGG	2 cut(s)	160, 265
BsmFI	GGGAC	2 cut(s)	18, 173
BsnI	GGCC	2 cut(s)	127, 333
Bsp120I	GGGCCC	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	6 cut(s)	48, 81, 219, 295, 304, 321
BspACI	CCGC	7 cut(s)	13, 55, 73, 133, 175, 201, 269
BspANI	GGCC	2 cut(s)	127, 333
BspFNI	CGCG	4 cut(s)	9, 67, 135, 168
BspHI	TCATGA	1 cut(s)	105
BspLI	GGNNCC	4 cut(s)	126, 127, 297, 334
BspMI	ACCTGC	1 cut(s)	34
BspPI	GGATC	2 cut(s)	290, 303
BsrBI	CCGCTC	1 cut(s)	55
BssECI	CCNNGG	2 cut(s)	259, 335
BssMI	GATC	6 cut(s)	48, 81, 219, 295, 304, 321
Bst2UI	CCWGG	3 cut(s)	40, 155, 337
Bst4CI	ACNGT	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	170
BstEII	GGTNACC	1 cut(s)	235
BstF5I	GGATG	1 cut(s)	114
BstFNI	CGCG	4 cut(s)	9, 67, 135, 168
BstH2I	RGCGCY	1 cut(s)	175
BstHHI	GCGC	5 cut(s)	69, 114, 168, 174, 319
BstKTI	GATC	6 cut(s)	51, 84, 222, 298, 307, 324
BstMBI	GATC	6 cut(s)	48, 81, 219, 295, 304, 321
BstMCI	CGRYCG	1 cut(s)	324
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BstNI	CCWGG	3 cut(s)	40, 155, 337
BstNSI	RCATGY	1 cut(s)	250
BstPI	GGTNACC	1 cut(s)	235
BstSCI	CCNGG	4 cut(s)	38, 153, 277, 335
BstSLI	GKGCMC	1 cut(s)	129
BstUI	CGCG	4 cut(s)	9, 67, 135, 168
BstV2I	GAAGAC	1 cut(s)	215
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BsuRI	GGCC	2 cut(s)	127, 333
BtsCI	GGATG	1 cut(s)	114
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	252
BveI	ACCTGC	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	170
CciI	TCATGA	1 cut(s)	105
CfoI	GCGC	5 cut(s)	69, 114, 168, 174, 319
Cfr13I	GGNCC	3 cut(s)	125, 126, 332
CseI	GACGC	2 cut(s)	15, 124
Csp6I	GTAC	3 cut(s)	58, 328, 343
CviAII	CATG	5 cut(s)	106, 178, 205, 247, 265
CviJI	RGCY	3 cut(s)	127, 151, 333
CviKI_1	RGCY	3 cut(s)	127, 151, 333
CviQI	GTAC	3 cut(s)	58, 328, 343
DpnI	GATC	6 cut(s)	50, 83, 221, 297, 306, 323
DpnII	GATC	6 cut(s)	48, 81, 219, 295, 304, 321
EciI	GGCGGA	2 cut(s)	190, 284
Eco24I	GRGCYC	1 cut(s)	129
Eco91I	GGTNACC	1 cut(s)	235
EcoO109I	RGGNCCY	1 cut(s)	125
EcoO65I	GGTNACC	1 cut(s)	235
EcoRII	CCWGG	3 cut(s)	38, 153, 335
EcoT38I	GRGCYC	1 cut(s)	129
FaeI	CATG	5 cut(s)	109, 181, 208, 250, 268
FaiI	YATR	5 cut(s)	107, 179, 206, 248, 266
FaqI	GGGAC	2 cut(s)	18, 173
FatI	CATG	5 cut(s)	105, 177, 204, 246, 264
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	1 cut(s)	175
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	175
FspBI	CTAG	1 cut(s)	346
GlaI	GCGC	5 cut(s)	68, 113, 167, 173, 318
GluI	GCNGC	1 cut(s)	175
GsuI	CTGGAG	2 cut(s)	137, 293
HaeII	RGCGCY	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	127, 333
HapII	CCGG	2 cut(s)	87, 279
HgaI	GACGC	2 cut(s)	15, 124
HhaI	GCGC	5 cut(s)	69, 114, 168, 174, 319
Hin1II	CATG	5 cut(s)	109, 181, 208, 250, 268
Hin6I	GCGC	5 cut(s)	67, 112, 166, 172, 317
HinP1I	GCGC	5 cut(s)	67, 112, 166, 172, 317
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	3 cut(s)	90, 197, 282
HpaII	CCGG	2 cut(s)	87, 279
HphI	GGTGA	2 cut(s)	58, 247
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	1 cut(s)	304
Hpy188III	TCNNGA	5 cut(s)	94, 106, 118, 286, 310
Hpy8I	GTNNAC	1 cut(s)	229
Hpy99I	CGWCG	3 cut(s)	197, 218, 230
HpyAV	CCTTC	2 cut(s)	115, 283
HpyCH4III	ACNGT	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
Hsp92II	CATG	5 cut(s)	109, 181, 208, 250, 268
HspAI	GCGC	5 cut(s)	67, 112, 166, 172, 317
Kzo9I	GATC	6 cut(s)	48, 81, 219, 295, 304, 321
LmnI	GCTCC	2 cut(s)	156, 163
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	1 cut(s)	346
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	6 cut(s)	50, 83, 221, 297, 306, 323
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	6 cut(s)	48, 81, 219, 295, 304, 321
MboII	GAAGA	2 cut(s)	40, 220
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	129
MluI	ACGCGT	1 cut(s)	7
MlyI	GAGTC	2 cut(s)	206, 291
MnlI	CCTC	9 cut(s)	46, 80, 151, 154, 155, 251, 269, 310, 333
MspI	CCGG	2 cut(s)	87, 279
MspR9I	CCNGG	4 cut(s)	40, 155, 279, 337
MvaI	CCWGG	3 cut(s)	40, 155, 337
MvnI	CGCG	4 cut(s)	9, 67, 135, 168
MwoI	GCNNNNNNNGC	1 cut(s)	174
NciI	CCSGG	1 cut(s)	279
NdeII	GATC	6 cut(s)	48, 81, 219, 295, 304, 321
NlaIII	CATG	5 cut(s)	109, 181, 208, 250, 268
NlaIV	GGNNCC	4 cut(s)	126, 127, 297, 334
NmeAIII	GCCGAG	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	235
NspI	RCATGY	1 cut(s)	250
PagI	TCATGA	1 cut(s)	105
PaqCI	CACCTGC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	90
PflFI	GACNNNGTC	1 cut(s)	185
PfoI	TCCNGGA	2 cut(s)	153, 277
PkrI	GCNGC	1 cut(s)	176
Ple19I	CGATCG	1 cut(s)	324
PleI	GAGTC	2 cut(s)	205, 290
PpsI	GAGTC	2 cut(s)	205, 290
Psp6I	CCWGG	3 cut(s)	38, 153, 335
PspEI	GGTNACC	1 cut(s)	235
PspGI	CCWGG	3 cut(s)	38, 153, 335
PspN4I	GGNNCC	4 cut(s)	126, 127, 297, 334
PspOMI	GGGCCC	1 cut(s)	125
PspPI	GGNCC	3 cut(s)	125, 126, 332
PsuI	RGATCY	1 cut(s)	295
PsyI	GACNNNGTC	1 cut(s)	185
PvuI	CGATCG	1 cut(s)	324
RsaI	GTAC	3 cut(s)	59, 329, 344
RsaNI	GTAC	3 cut(s)	58, 328, 343
SalI	GTCGAC	1 cut(s)	227
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	6 cut(s)	48, 81, 219, 295, 304, 321
Sau96I	GGNCC	3 cut(s)	125, 126, 332
SchI	GAGTC	2 cut(s)	206, 291
ScrFI	CCNGG	4 cut(s)	40, 155, 279, 337
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	5 cut(s)	48, 153, 237, 294, 344
SfaNI	GCATC	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SsiI	CCGC	7 cut(s)	13, 55, 73, 133, 175, 201, 269
SspMI	CTAG	1 cut(s)	346
StyD4I	CCNGG	4 cut(s)	38, 153, 277, 335
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	4 cut(s)	51, 95, 228, 243
TaqII	GACCGA	1 cut(s)	227
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	90
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	235
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	2 cut(s)	122, 221
TspRI	CASTG	1 cut(s)	259
Tth111I	GACNNNGTC	1 cut(s)	185
XceI	RCATGY	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.