Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0010621

Physical Location & Seq

Genomic Coordinates Reverse (-)

44104212 .. 44104624

Gene Structure 413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G030970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGGACGCGTCCGCACCAAGACCGTGAAGAATTCCTCCTGGCAGGTGATCGAGCGGTACTACTCGCGCATGACCCTCGACTTCCACACCAACAAGAAGCGCCTCCGCAACAAGATCGCCGGATTCTCGACCCATCTCATGAAGCGCATCCAGAAGGGCCCCGTCCGCGTCATCTCCCTCAAGCTCCATGAGGAGGAGCGCGAGCGCCGCATGGACTTTGTCCCCGACGAGTCCGCCATGAAGACCGACGAGATCGCCGTCGACAAGGTGACCCTCGATATGCTCACTGCTCTCGGCATGGCGGATATTCCCGGAGTCAAGAAGGTGGATCCCTCTGATCTCCAGACTGCGCCAATCGGGTACGGCCCCATGAGGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

126

Amino Acids

14.57

Weight (kDa)

9.88

Isoelectric Point (pI)

34.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17e	PF00833	1 - 110	1.4e-43	Ribosomal S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0010621)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0460781 RchiOBHm_Chr5g0017161 RchiOBHm_Chr7g0200781
rosa_multiflora	Rmu_sc0001384.1_g000001 Rmu_sc0007034.1_g000019 Rmu_sc0007860.1_g000003 Rmu_sc0015544.1_g000001 Rmu_ssc0000110.1_g000005
rosa_samantha	Rh1AG371700 Rh1BG209900 Rh1CG165000 Rh5AG132300 Rh5CG139500 Rh6AG269000 Rh7CG324300
rosa_wichuraiana	Rw0G003350 Rw5G044880 Rw6G031720 Rw6G043180 Rw7G022940 Rw7G030970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	34
Acc36I	ACCTGC	1 cut(s)	34
AccBSI	CCGCTC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	261
AccII	CGCG	4 cut(s)	9, 67, 168, 201
AciI	CCGC	7 cut(s)	13, 55, 106, 166, 208, 234, 302
AclWI	GGATC	2 cut(s)	323, 336
AcsI	RAATTY	1 cut(s)	31
AfaI	GTAC	3 cut(s)	59, 362, 377
AfiI	CCNNNNNNNGG	1 cut(s)	193
AflIII	ACRYGT	1 cut(s)	7
AjnI	CCWGG	1 cut(s)	38
AluBI	AGCT	1 cut(s)	184
AluI	AGCT	1 cut(s)	184
AlwI	GGATC	2 cut(s)	323, 336
AoxI	GGCC	2 cut(s)	157, 364
ApaI	GGGCCC	1 cut(s)	161
ApoI	RAATTY	1 cut(s)	31
AspLEI	GCGC	6 cut(s)	69, 102, 147, 201, 207, 352
AspS9I	GGNCC	3 cut(s)	157, 158, 365
AsuC2I	CCSGG	1 cut(s)	312
AsuHPI	GGTGA	2 cut(s)	58, 280
BaeGI	GKGCMC	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	328
BanII	GRGCYC	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	248
BccI	CCATC	1 cut(s)	141
BceAI	ACGGC	2 cut(s)	242, 379
BcgI	CGANNNNNNTGC	4 cut(s)	58, 92, 97, 131
BciT130I	CCWGG	1 cut(s)	40
BcnI	CCSGG	1 cut(s)	312
BfaI	CTAG	1 cut(s)	379
BfoI	RGCGCY	2 cut(s)	103, 208
BfuAI	ACCTGC	1 cut(s)	34
BisI	GCNGC	1 cut(s)	208
BlsI	GCNGC	1 cut(s)	209
Bme1390I	CCNGG	2 cut(s)	40, 312
BmgT120I	GGNCC	3 cut(s)	157, 158, 365
BmiI	GGNNCC	4 cut(s)	159, 160, 330, 367
BmrFI	CCNGG	2 cut(s)	40, 312
BmsI	GCATC	1 cut(s)	156
BpiI	GAAGAC	1 cut(s)	248
BpmI	CTGGAG	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	40
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseRI	GAGGAG	2 cut(s)	206, 209
BseSI	GKGCMC	1 cut(s)	161
Bsh1236I	CGCG	4 cut(s)	9, 67, 168, 201
BshFI	GGCC	2 cut(s)	159, 366
BsiSI	CCGG	2 cut(s)	120, 312
BslFI	GGGAC	2 cut(s)	18, 206
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmFI	GGGAC	2 cut(s)	18, 206
BsnI	GGCC	2 cut(s)	159, 366
Bsp120I	GGGCCC	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	5 cut(s)	48, 114, 252, 328, 337
BspACI	CCGC	7 cut(s)	13, 55, 106, 166, 208, 234, 302
BspANI	GGCC	2 cut(s)	159, 366
BspFNI	CGCG	4 cut(s)	9, 67, 168, 201
BspHI	TCATGA	1 cut(s)	138
BspLI	GGNNCC	4 cut(s)	159, 160, 330, 367
BspMI	ACCTGC	1 cut(s)	34
BspPI	GGATC	2 cut(s)	323, 336
BsrBI	CCGCTC	1 cut(s)	55
BssMI	GATC	5 cut(s)	48, 114, 252, 328, 337
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	203
BstEII	GGTNACC	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	147
BstFNI	CGCG	4 cut(s)	9, 67, 168, 201
BstH2I	RGCGCY	2 cut(s)	103, 208
BstHHI	GCGC	6 cut(s)	69, 102, 147, 201, 207, 352
BstKTI	GATC	5 cut(s)	51, 117, 255, 331, 340
BstMBI	GATC	5 cut(s)	48, 114, 252, 328, 337
BstMWI	GCNNNNNNNGC	2 cut(s)	165, 207
BstNI	CCWGG	1 cut(s)	40
BstPI	GGTNACC	1 cut(s)	268
BstSCI	CCNGG	2 cut(s)	38, 310
BstSLI	GKGCMC	1 cut(s)	161
BstUI	CGCG	4 cut(s)	9, 67, 168, 201
BstV2I	GAAGAC	1 cut(s)	248
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BsuRI	GGCC	2 cut(s)	159, 366
BtsCI	GGATG	1 cut(s)	147
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	285
BveI	ACCTGC	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	203
CciI	TCATGA	1 cut(s)	138
CfoI	GCGC	6 cut(s)	69, 102, 147, 201, 207, 352
Cfr13I	GGNCC	3 cut(s)	157, 158, 365
CseI	GACGC	2 cut(s)	15, 157
Csp6I	GTAC	3 cut(s)	58, 361, 376
CviAII	CATG	7 cut(s)	70, 139, 188, 211, 238, 298, 370
CviJI	RGCY	3 cut(s)	159, 184, 366
CviKI_1	RGCY	3 cut(s)	159, 184, 366
CviQI	GTAC	3 cut(s)	58, 361, 376
DpnI	GATC	5 cut(s)	50, 116, 254, 330, 339
DpnII	GATC	5 cut(s)	48, 114, 252, 328, 337
EciI	GGCGGA	2 cut(s)	223, 317
Eco24I	GRGCYC	1 cut(s)	161
Eco91I	GGTNACC	1 cut(s)	268
EcoO109I	RGGNCCY	2 cut(s)	157, 158
EcoO65I	GGTNACC	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	38
EcoT38I	GRGCYC	1 cut(s)	161
FaeI	CATG	7 cut(s)	73, 142, 191, 214, 241, 301, 373
FaiI	YATR	8 cut(s)	71, 140, 189, 212, 239, 281, 299, 371
FaqI	GGGAC	2 cut(s)	18, 206
FatI	CATG	7 cut(s)	69, 138, 187, 210, 237, 297, 369
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	208
FokI	GGATG	1 cut(s)	134
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	208
FspBI	CTAG	1 cut(s)	379
GlaI	GCGC	6 cut(s)	68, 101, 146, 200, 206, 351
GluI	GCNGC	1 cut(s)	208
GsuI	CTGGAG	1 cut(s)	326
HaeII	RGCGCY	2 cut(s)	103, 208
HaeIII	GGCC	2 cut(s)	159, 366
HapII	CCGG	2 cut(s)	120, 312
HgaI	GACGC	2 cut(s)	15, 157
HhaI	GCGC	6 cut(s)	69, 102, 147, 201, 207, 352
Hin1II	CATG	7 cut(s)	73, 142, 191, 214, 241, 301, 373
Hin6I	GCGC	6 cut(s)	67, 100, 145, 199, 205, 350
HinP1I	GCGC	6 cut(s)	67, 100, 145, 199, 205, 350
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	3 cut(s)	123, 230, 315
HpaII	CCGG	2 cut(s)	120, 312
HphI	GGTGA	2 cut(s)	58, 280
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	5 cut(s)	127, 139, 151, 319, 343
Hpy8I	GTNNAC	1 cut(s)	262
Hpy99I	CGWCG	3 cut(s)	230, 251, 263
HpyAV	CCTTC	2 cut(s)	148, 316
HpyCH4III	ACNGT	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	2 cut(s)	165, 207
Hsp92II	CATG	7 cut(s)	73, 142, 191, 214, 241, 301, 373
HspAI	GCGC	6 cut(s)	67, 100, 145, 199, 205, 350
Kzo9I	GATC	5 cut(s)	48, 114, 252, 328, 337
LmnI	GCTCC	2 cut(s)	189, 196
LpnPI	CCDG	7 cut(s)	25, 29, 52, 133, 164, 325, 356
LweI	GCATC	1 cut(s)	156
MaeI	CTAG	1 cut(s)	379
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	5 cut(s)	50, 116, 254, 330, 339
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	5 cut(s)	48, 114, 252, 328, 337
MboII	GAAGA	2 cut(s)	40, 253
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	1 cut(s)	31
MluI	ACGCGT	1 cut(s)	7
MlyI	GAGTC	2 cut(s)	239, 324
MnlI	CCTC	9 cut(s)	46, 86, 113, 184, 187, 188, 284, 343, 366
MspI	CCGG	2 cut(s)	120, 312
MspR9I	CCNGG	2 cut(s)	40, 312
MvaI	CCWGG	1 cut(s)	40
MvnI	CGCG	4 cut(s)	9, 67, 168, 201
MwoI	GCNNNNNNNGC	2 cut(s)	165, 207
NciI	CCSGG	1 cut(s)	312
NdeII	GATC	5 cut(s)	48, 114, 252, 328, 337
NlaIII	CATG	7 cut(s)	73, 142, 191, 214, 241, 301, 373
NlaIV	GGNNCC	4 cut(s)	159, 160, 330, 367
NmeAIII	GCCGAG	1 cut(s)	273
NmuCI	GTSAC	1 cut(s)	268
PagI	TCATGA	1 cut(s)	138
PaqCI	CACCTGC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	123
PflFI	GACNNNGTC	1 cut(s)	218
PfoI	TCCNGGA	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	209
PleI	GAGTC	2 cut(s)	238, 323
PpsI	GAGTC	2 cut(s)	238, 323
Psp6I	CCWGG	1 cut(s)	38
PspEI	GGTNACC	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	38
PspN4I	GGNNCC	4 cut(s)	159, 160, 330, 367
PspOMI	GGGCCC	1 cut(s)	157
PspPI	GGNCC	3 cut(s)	157, 158, 365
PsuI	RGATCY	1 cut(s)	328
PsyI	GACNNNGTC	1 cut(s)	218
RsaI	GTAC	3 cut(s)	59, 362, 377
RsaNI	GTAC	3 cut(s)	58, 361, 376
SalI	GTCGAC	1 cut(s)	260
SatI	GCNGC	1 cut(s)	208
Sau3AI	GATC	5 cut(s)	48, 114, 252, 328, 337
Sau96I	GGNCC	3 cut(s)	157, 158, 365
SchI	GAGTC	2 cut(s)	239, 324
ScrFI	CCNGG	2 cut(s)	40, 312
SduI	GDGCHC	1 cut(s)	161
SetI	ASST	5 cut(s)	48, 186, 270, 327, 377
SfaNI	GCATC	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	7 cut(s)	13, 55, 106, 166, 208, 234, 302
SspMI	CTAG	1 cut(s)	379
StyD4I	CCNGG	2 cut(s)	38, 310
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	5 cut(s)	51, 78, 128, 261, 276
TaqII	GACCGA	1 cut(s)	260
TasI	AATT	1 cut(s)	31
TauI	GCSGC	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	123
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	2 cut(s)	155, 254
TspRI	CASTG	1 cut(s)	292
Tth111I	GACNNNGTC	1 cut(s)	218
XapI	RAATTY	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.