Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0010621

Physical Location & Seq

Genomic Coordinates Reverse (-)

36392758 .. 36393330

Gene Structure 573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG165000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGAAGCGCATCCAGAAGGGCCCCGTCCGCGTCATCTCCCTCAAGCTCCAGGAGGAGGAGAGCGAGCGCCGCATGGACTTTGTCCCCGACGAGTTCGCCATGAAGACCGACGAGATCGCCGTCGACAAGGTGACCCTCGACATGCCCACTGCTCTCGGCATGGCGGATATTCCCGGAGTCAAGAAGGTGGATCCCTCTGATCTCCAGACTGCGCCGATCGGGTGCGGCCCCAGGAGGCTGAACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

82

Amino Acids

9.15

Weight (kDa)

5.37

Isoelectric Point (pI)

53.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17e	PF00833	1 - 64	5.2e-17	Ribosomal S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010621)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0460781 RchiOBHm_Chr5g0017161 RchiOBHm_Chr7g0200781
rosa_multiflora	Rmu_sc0001384.1_g000001 Rmu_sc0007034.1_g000019 Rmu_sc0007860.1_g000003 Rmu_sc0015544.1_g000001 Rmu_ssc0000110.1_g000005
rosa_samantha	Rh1AG371700 Rh1BG209900 Rh1CG165000 Rh5AG132300 Rh5CG139500 Rh6AG269000 Rh7CG324300
rosa_wichuraiana	Rw0G003350 Rw5G044880 Rw6G031720 Rw6G043180 Rw7G022940 Rw7G030970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	1 cut(s)	30
AciI	CCGC	4 cut(s)	28, 70, 164, 225
AclWI	GGATC	2 cut(s)	185, 198
AfiI	CCNNNNNNNGG	1 cut(s)	55
AjnI	CCWGG	2 cut(s)	48, 230
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
AlwI	GGATC	2 cut(s)	185, 198
AoxI	GGCC	2 cut(s)	19, 226
ApaI	GGGCCC	1 cut(s)	23
AspLEI	GCGC	3 cut(s)	9, 69, 214
AspS9I	GGNCC	3 cut(s)	19, 20, 227
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	142
BaeGI	GKGCMC	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	104
BciT130I	CCWGG	2 cut(s)	50, 232
BcnI	CCSGG	1 cut(s)	174
BfoI	RGCGCY	1 cut(s)	70
BisI	GCNGC	2 cut(s)	70, 226
BlsI	GCNGC	2 cut(s)	71, 227
Bme1390I	CCNGG	3 cut(s)	50, 174, 232
BmgT120I	GGNCC	3 cut(s)	19, 20, 227
BmiI	GGNNCC	4 cut(s)	21, 22, 192, 229
BmrFI	CCNGG	3 cut(s)	50, 174, 232
BmsI	GCATC	1 cut(s)	18
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	2 cut(s)	32, 188
BpuEI	CTTGAG	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	244
BseBI	CCWGG	2 cut(s)	50, 232
BseDI	CCNNGG	1 cut(s)	230
BseGI	GGATG	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	2 cut(s)	68, 71
BseSI	GKGCMC	1 cut(s)	23
Bsh1236I	CGCG	1 cut(s)	30
Bsh1285I	CGRYCG	1 cut(s)	219
BshFI	GGCC	2 cut(s)	21, 228
BsiEI	CGRYCG	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	21, 228
Bsp120I	GGGCCC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	4 cut(s)	114, 190, 199, 216
BspACI	CCGC	4 cut(s)	28, 70, 164, 225
BspANI	GGCC	2 cut(s)	21, 228
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	4 cut(s)	21, 22, 192, 229
BspPI	GGATC	2 cut(s)	185, 198
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	230
BssMI	GATC	4 cut(s)	114, 190, 199, 216
Bst2UI	CCWGG	2 cut(s)	50, 232
BstC8I	GCNNGC	1 cut(s)	65
BstEII	GGTNACC	1 cut(s)	130
BstF5I	GGATG	1 cut(s)	9
BstFNI	CGCG	1 cut(s)	30
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	3 cut(s)	9, 69, 214
BstKTI	GATC	4 cut(s)	117, 193, 202, 219
BstMBI	GATC	4 cut(s)	114, 190, 199, 216
BstMCI	CGRYCG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 69
BstNI	CCWGG	2 cut(s)	50, 232
BstNSI	RCATGY	1 cut(s)	145
BstPI	GGTNACC	1 cut(s)	130
BstSCI	CCNGG	3 cut(s)	48, 172, 230
BstSLI	GKGCMC	1 cut(s)	23
BstUI	CGCG	1 cut(s)	30
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BsuRI	GGCC	2 cut(s)	21, 228
BtsCI	GGATG	1 cut(s)	9
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	65
CfoI	GCGC	3 cut(s)	9, 69, 214
Cfr13I	GGNCC	3 cut(s)	19, 20, 227
CseI	GACGC	1 cut(s)	19
CviAII	CATG	4 cut(s)	73, 100, 142, 160
CviJI	RGCY	4 cut(s)	21, 46, 228, 238
CviKI_1	RGCY	4 cut(s)	21, 46, 228, 238
DpnI	GATC	4 cut(s)	116, 192, 201, 218
DpnII	GATC	4 cut(s)	114, 190, 199, 216
EciI	GGCGGA	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	23
Eco91I	GGTNACC	1 cut(s)	130
EcoO109I	RGGNCCY	2 cut(s)	19, 20
EcoO65I	GGTNACC	1 cut(s)	130
EcoRII	CCWGG	2 cut(s)	48, 230
EcoT38I	GRGCYC	1 cut(s)	23
FaeI	CATG	4 cut(s)	76, 103, 145, 163
FaiI	YATR	4 cut(s)	74, 101, 143, 161
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	4 cut(s)	72, 99, 141, 159
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	70, 226
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	2 cut(s)	70, 226
GlaI	GCGC	3 cut(s)	8, 68, 213
GluI	GCNGC	2 cut(s)	70, 226
GsuI	CTGGAG	2 cut(s)	32, 188
HaeII	RGCGCY	1 cut(s)	70
HaeIII	GGCC	2 cut(s)	21, 228
HapII	CCGG	1 cut(s)	174
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	3 cut(s)	9, 69, 214
Hin1II	CATG	4 cut(s)	76, 103, 145, 163
Hin6I	GCGC	3 cut(s)	7, 67, 212
HinP1I	GCGC	3 cut(s)	7, 67, 212
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	1 cut(s)	177
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	3 cut(s)	13, 181, 205
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	3 cut(s)	92, 113, 125
HpyAV	CCTTC	2 cut(s)	10, 178
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 69
Hsp92II	CATG	4 cut(s)	76, 103, 145, 163
HspAI	GCGC	3 cut(s)	7, 67, 212
Kzo9I	GATC	4 cut(s)	114, 190, 199, 216
LmnI	GCTCC	1 cut(s)	51
LpnPI	CCDG	7 cut(s)	26, 35, 62, 187, 217, 218, 244
LweI	GCATC	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	4 cut(s)	116, 192, 201, 218
MboI	GATC	4 cut(s)	114, 190, 199, 216
MboII	GAAGA	1 cut(s)	115
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	23
MlyI	GAGTC	1 cut(s)	186
MnlI	CCTC	6 cut(s)	46, 49, 50, 146, 205, 228
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	3 cut(s)	50, 174, 232
MvaI	CCWGG	2 cut(s)	50, 232
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	27, 69
NciI	CCSGG	1 cut(s)	174
NdeII	GATC	4 cut(s)	114, 190, 199, 216
NlaIII	CATG	4 cut(s)	76, 103, 145, 163
NlaIV	GGNNCC	4 cut(s)	21, 22, 192, 229
NmeAIII	GCCGAG	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	130
NspI	RCATGY	1 cut(s)	145
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PflFI	GACNNNGTC	1 cut(s)	80
PfoI	TCCNGGA	2 cut(s)	48, 172
PkrI	GCNGC	2 cut(s)	71, 227
Ple19I	CGATCG	1 cut(s)	219
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
Psp6I	CCWGG	2 cut(s)	48, 230
PspEI	GGTNACC	1 cut(s)	130
PspGI	CCWGG	2 cut(s)	48, 230
PspN4I	GGNNCC	4 cut(s)	21, 22, 192, 229
PspOMI	GGGCCC	1 cut(s)	19
PspPI	GGNCC	3 cut(s)	19, 20, 227
PsuI	RGATCY	1 cut(s)	190
PsyI	GACNNNGTC	1 cut(s)	80
PvuI	CGATCG	1 cut(s)	219
SalI	GTCGAC	1 cut(s)	122
SatI	GCNGC	2 cut(s)	70, 226
Sau3AI	GATC	4 cut(s)	114, 190, 199, 216
Sau96I	GGNCC	3 cut(s)	19, 20, 227
SchI	GAGTC	1 cut(s)	186
ScrFI	CCNGG	3 cut(s)	50, 174, 232
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	3 cut(s)	48, 132, 189
SfaNI	GCATC	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SsiI	CCGC	4 cut(s)	28, 70, 164, 225
StyD4I	CCNGG	3 cut(s)	48, 172, 230
TaqI	TCGA	2 cut(s)	123, 138
TaqII	GACCGA	1 cut(s)	122
TauI	GCSGC	2 cut(s)	72, 228
TscAI	CASTG	1 cut(s)	154
TseFI	GTSAC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	2 cut(s)	17, 116
TspRI	CASTG	1 cut(s)	154
Tth111I	GACNNNGTC	1 cut(s)	80
XceI	RCATGY	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.