Rmu_sc0007870.1_g000004

Pentatricopeptide repeat-containing protein At5g64320

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007870.1
Physical Location & Seq
Forward (+)
23744 .. 25891
2148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007870.1_g000004.1.cds

Sequence Viewer

Length: 2148 bp
atgttaaaaattccaaaactttggcatcctctgaccaaaaagttgcaatctttgatcaatactcaccgttttgggattttctcagctgggtatgttaagggtagcaatgacaatggtttagagtcagagaatgagtgggagaggttgcttaagccatttgacctcaatgaacttcggaaatcactcgttcaaattaccccagttcagctttgtaagttacttgaactcccacttgacgtgcccacgtcaatggaaatattcgaattggtgggtgcccagaggggatatagccattcatttgatgtgtactatatgttgattgataagcttggcgcggcgggggagtttaaggtcatagataggttgttgatgcagattaaagacgaagggatggtttttagagagtccattttcattatgatcatgaaacattatggcagagcgggcttgcctggtcaggcgactaggctgcttctggatatgagaggggtttattcttttgaacctactttcaaatcttacaatgctgttttggatatactggtggctgggaattgccccaaggtggcacccaatgtgttctatgacatgttgagtaggggcatctctcccaatgtttacacatttgggctggttctgaaggcattttgtatggttaatgaggtggattctgcatgctcgctccttagagacatgacgaagcatgggtgtgtgccgaattctgtggtttaccagactcttatacatgccctctccagaaatgagcgagtgaatgaagcattgagacttttggaggaaatgttcttgatgggttgcactcctgatgttcagacttttaatgatattatccatggtctctgcaaggccaatcggattcaggaggcagcaaagttggttgatcggatgcttttgcggggttttactcctgatgagataacttatggagttttaatgaacggattatgtagaacagggcatgttgatgaagcaagggcattgttaaataaagtgcctagcccgaatgctgtgcttttcaataccttgattaatggttatgttaccagtggacgctttgatgaagccaaagttgtctactgtgatggcatgctgggtaacagctgtgaccttgatgtttatacatttaacattctgattcgtggactttgcaagaagggcagtttgacttctgctcgtgaattggtcagtgagatggaaactaagggctgcaagcccaatgtgataacttacacgatattggttgatgcgttatgcaaggaaggtcaactacaggaagctggtgatgttttaaatgagatgtcatacaagggtcttggtccgaatatcgtgggatacaattgtctaatatctgctctctgcaaggatggaaaggtccacgaagctttaaagttgtttagtgaaatctcaagcaaaggatgtaaggcagacatatttacctttaattctttgatatttggattgtgcaaggttgataggatggaagaggcattgagattgtaccatgatatgttattggagggtgttattgccaacactgtaacttataacacattaattcttggttttctgactggaggtgcgatccaagaagcactgaagcttgtaaatgaaatggtgtctagaggatgccctcttgacaaaataacctataatgggttagtaaaggcactctgcagagctggggctgtagaaaaagcaaggggattgtttgaagaaatgatgaggacaggacttcatccagatagtatctcgtgcaatattttgattaatggcctctgtaaaagtggcaaagtatatgaagcccttgagttcctaagggatatgattcatcgcggtttaatgcccgatatagtcacttataatagcctgataaatggtatgtgcaagatgggacacatttgggaagctttgaatctctttgacagattacaagctgaaggggtatgccctgatgctattacttataacactttgatcagttggcattgcaaagagggcatgattaatgatgcttgtttgcttctacatagaggtgtgactaatggattcataccaaatcatgtgacgtggtatatattggtcagcaacctgtctaaagaaagaggttatgtccatcagggctttatttaa

Protein Analysis

715

Amino Acids

79.88

Weight (kDa)

6.64

Isoelectric Point (pI)

24.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1563, 1878, 1983
AccB1I GGYRCC 2 cut(s) 272, 568
AccBSI CCGCTC 1 cut(s) 443
AccI GTMKAC 1 cut(s) 1092
AccII CGCG 2 cut(s) 335, 1851
AciI CCGC 5 cut(s) 335, 338, 443, 913, 1851
AclWI GGATC 1 cut(s) 1594
AcsI RAATTY 2 cut(s) 9, 718
AcuI CTGAAG 3 cut(s) 659, 1634, 1974
AfaI GTAC 2 cut(s) 308, 1517
AfiI CCNNNNNNNGG 2 cut(s) 565, 1671
AflII CTTAAG 1 cut(s) 149
AflIII ACRYGT 1 cut(s) 588
AgsI TTSAA 7 cut(s) 191, 224, 503, 514, 1036, 1730, 1930
AjiI CACGTC 3 cut(s) 238, 246, 2085
AjnI CCWGG 1 cut(s) 451
AloI GAACNNNNNNTCC 2 cut(s) 785, 817
Alw26I GTCTC 3 cut(s) 684, 778, 860
AlwI GGATC 1 cut(s) 1594
AoxI GGCC 2 cut(s) 864, 1789
ApeKI GCWGC 3 cut(s) 469, 884, 1224
ApoI RAATTY 2 cut(s) 9, 718
AseI ATTAAT 4 cut(s) 1047, 1571, 1785, 2022
AspLEI GCGC 1 cut(s) 335
AspS9I GGNCC 2 cut(s) 1334, 1390
AsuHPI GGTGA 2 cut(s) 56, 1310
AsuII TTCGAA 1 cut(s) 261
AvaII GGWCC 2 cut(s) 1334, 1390
AxyI CCTNAGG 1 cut(s) 1832
BaeGI GKGCMC 2 cut(s) 243, 277
BaeI ACNNNNGTAYC 2 cut(s) 1342, 1375
BanI GGYRCC 2 cut(s) 272, 568
BarI GAAGNNNNNNTAC 2 cut(s) 1269, 1301
BauI CACGAG 2 cut(s) 1191, 1768
BbvI GCAGC 3 cut(s) 456, 896, 1211
BccI CCATC 8 cut(s) 385, 802, 1094, 1204, 1376, 1489, 1900, 2139
BcgI CGANNNNNNTGC 4 cut(s) 451, 485, 1009, 1043
BciT130I CCWGG 1 cut(s) 453
BciVI GTATCC 1 cut(s) 1343
BclI TGATCA 3 cut(s) 54, 420, 1992
BcoDI GTCTC 3 cut(s) 684, 778, 860
BfaI CTAG 3 cut(s) 465, 1014, 1638
BfmI CTRYAG 3 cut(s) 1286, 1690, 1704
BfrI CTTAAG 1 cut(s) 149
BfuI GTATCC 1 cut(s) 1343
BisI GCNGC 4 cut(s) 336, 470, 885, 1225
BlsI GCNGC 4 cut(s) 337, 471, 886, 1226
Bme1390I CCNGG 1 cut(s) 453
Bme18I GGWCC 2 cut(s) 1334, 1390
BmgBI CACGTC 3 cut(s) 238, 246, 2085
BmgT120I GGNCC 2 cut(s) 1334, 1390
BmiI GGNNCC 2 cut(s) 274, 570
BmrFI CCNGG 1 cut(s) 453
BmrI ACTGGG 1 cut(s) 194
BmsI GCATC 8 cut(s) 34, 360, 612, 894, 1252, 1634, 1960, 2017
BmuI ACTGGG 1 cut(s) 194
BpmI CTGGAG 2 cut(s) 739, 1611
Bpu14I TTCGAA 1 cut(s) 261
BpuEI CTTGAG 2 cut(s) 1408, 1844
BsaI GGTCTC 1 cut(s) 860
BsaJI CCNNGG 2 cut(s) 561, 850
BsaXI ACNNNNNCTCC 4 cut(s) 210, 240, 785, 815
Bsc4I CCNNNNNNNGG 2 cut(s) 565, 1671
Bse1I ACTGG 4 cut(s) 200, 546, 1062, 1594
Bse21I CCTNAGG 1 cut(s) 1832
Bse3DI GCAATG 2 cut(s) 112, 2002
BseBI CCWGG 1 cut(s) 453
BseDI CCNNGG 2 cut(s) 561, 850
BseGI GGATG 8 cut(s) 25, 396, 909, 1387, 1439, 1500, 1649, 1753
BseLI CCNNNNNNNGG 2 cut(s) 565, 1671
BseMI GCAATG 2 cut(s) 112, 2002
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 4 cut(s) 200, 546, 1062, 1594
BseSI GKGCMC 2 cut(s) 243, 277
BseXI GCAGC 3 cut(s) 456, 896, 1211
BseYI CCCAGC 4 cut(s) 86, 548, 1108, 1697
Bsh1236I CGCG 2 cut(s) 335, 1851
BshFI GGCC 2 cut(s) 866, 1791
BshNI GGYRCC 2 cut(s) 272, 568
BslFI GGGAC 1 cut(s) 1923
BslI CCNNNNNNNGG 2 cut(s) 565, 1671
BsmAI GTCTC 3 cut(s) 684, 778, 860
BsmFI GGGAC 1 cut(s) 1923
BsmI GAATGC 1 cut(s) 1027
BsnI GGCC 2 cut(s) 866, 1791
Bso31I GGTCTC 1 cut(s) 860
Bsp119I TTCGAA 1 cut(s) 261
Bsp1286I GDGCHC 2 cut(s) 243, 277
Bsp143I GATC 5 cut(s) 54, 420, 898, 1599, 1992
Bsp19I CCATGG 1 cut(s) 850
BspACI CCGC 5 cut(s) 335, 338, 443, 913, 1851
BspANI GGCC 2 cut(s) 866, 1791
BspCNI CTCAG 1 cut(s) 95
BspFNI CGCG 2 cut(s) 335, 1851
BspHI TCATGA 1 cut(s) 423
BspLI GGNNCC 2 cut(s) 274, 570
BspMAI CTGCAG 1 cut(s) 1694
BspPI GGATC 1 cut(s) 1594
BspT104I TTCGAA 1 cut(s) 261
BspT107I GGYRCC 2 cut(s) 272, 568
BspTI CTTAAG 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 860
BsrBI CCGCTC 1 cut(s) 443
BsrDI GCAATG 2 cut(s) 112, 2002
BsrI ACTGG 4 cut(s) 200, 546, 1062, 1594
BssECI CCNNGG 2 cut(s) 561, 850
BssMI GATC 5 cut(s) 54, 420, 898, 1599, 1992
BssSI CACGAG 2 cut(s) 1191, 1768
BssT1I CCWWGG 2 cut(s) 561, 850
Bst2BI CACGAG 2 cut(s) 1191, 1768
Bst2UI CCWGG 1 cut(s) 453
Bst4CI ACNGT 3 cut(s) 68, 1097, 1555
Bst6I CTCTTC 1 cut(s) 1494
BstAFI CTTAAG 1 cut(s) 149
BstBI TTCGAA 1 cut(s) 261
BstC8I GCNNGC 6 cut(s) 445, 449, 676, 680, 1106, 1229
BstDEI CTNAG 4 cut(s) 82, 686, 1218, 1832
BstDSI CCRYGG 1 cut(s) 850
BstF5I GGATG 8 cut(s) 25, 396, 909, 1387, 1439, 1500, 1649, 1753
BstFNI CGCG 2 cut(s) 335, 1851
BstHHI GCGC 1 cut(s) 335
BstKTI GATC 5 cut(s) 57, 423, 901, 1602, 1995
BstMAI GTCTC 3 cut(s) 684, 778, 860
BstMBI GATC 5 cut(s) 54, 420, 898, 1599, 1992
BstMWI GCNNNNNNNGC 3 cut(s) 444, 1173, 2013
BstNI CCWGG 1 cut(s) 453
BstNSI RCATGY 5 cut(s) 592, 678, 749, 980, 1108
BstSCI CCNGG 1 cut(s) 451
BstSFI CTRYAG 3 cut(s) 1286, 1690, 1704
BstSLI GKGCMC 2 cut(s) 243, 277
BstUI CGCG 2 cut(s) 335, 1851
BstV1I GCAGC 3 cut(s) 456, 896, 1211
BstXI CCANNNNNNTGG 2 cut(s) 21, 250
Bsu36I CCTNAGG 1 cut(s) 1832
BsuI GTATCC 1 cut(s) 1343
BsuRI GGCC 2 cut(s) 866, 1791
BtgI CCRYGG 1 cut(s) 850
BtgZI GCGATG 1 cut(s) 1832
BtrI CACGTC 3 cut(s) 238, 246, 2085
BtsCI GGATG 8 cut(s) 25, 396, 909, 1387, 1439, 1500, 1649, 1753
BtsIMutI CAGTG 4 cut(s) 1069, 1210, 1551, 1610
Cac8I GCNNGC 6 cut(s) 445, 449, 676, 680, 1106, 1229
CciI TCATGA 1 cut(s) 423
CfoI GCGC 1 cut(s) 335
Cfr13I GGNCC 2 cut(s) 1334, 1390
CseI GACGC 1 cut(s) 1077
Csp6I GTAC 2 cut(s) 307, 1516
CviQI GTAC 2 cut(s) 307, 1516
DdeI CTNAG 4 cut(s) 82, 686, 1218, 1832
DpnI GATC 5 cut(s) 56, 422, 900, 1601, 1994
DpnII GATC 5 cut(s) 54, 420, 898, 1599, 1992
DraI TTTAAA 2 cut(s) 1308, 1404
Eam1104I CTCTTC 1 cut(s) 1494
EarI CTCTTC 1 cut(s) 1494
Eco130I CCWWGG 2 cut(s) 561, 850
Eco31I GGTCTC 1 cut(s) 860
Eco47I GGWCC 2 cut(s) 1334, 1390
Eco57I CTGAAG 3 cut(s) 659, 1634, 1974
Eco81I CCTNAGG 1 cut(s) 1832
EcoRI GAATTC 1 cut(s) 718
EcoRII CCWGG 1 cut(s) 451
EcoT14I CCWWGG 2 cut(s) 561, 850
ErhI CCWWGG 2 cut(s) 561, 850
FaqI GGGAC 1 cut(s) 1923
FauI CCCGC 3 cut(s) 331, 436, 906
FbaI TGATCA 3 cut(s) 54, 420, 1992
FblI GTMKAC 1 cut(s) 1092
Fnu4HI GCNGC 4 cut(s) 336, 470, 885, 1225
FokI GGATG 8 cut(s) 12, 403, 916, 1394, 1446, 1507, 1656, 1740
Fsp4HI GCNGC 4 cut(s) 336, 470, 885, 1225
FspBI CTAG 3 cut(s) 465, 1014, 1638
GlaI GCGC 1 cut(s) 334
GluI GCNGC 4 cut(s) 336, 470, 885, 1225
GsaI CCCAGC 4 cut(s) 90, 552, 1112, 1701
GsuI CTGGAG 2 cut(s) 739, 1611
HaeIII GGCC 2 cut(s) 866, 1791
HgaI GACGC 1 cut(s) 1077
HhaI GCGC 1 cut(s) 335
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HincII GTYRAC 1 cut(s) 1283
HindII GTYRAC 1 cut(s) 1283
HindIII AAGCTT 4 cut(s) 326, 1398, 1616, 1923
HinfI GANTC 9 cut(s) 122, 404, 668, 736, 874, 1153, 1843, 1930, 2064
HphI GGTGA 2 cut(s) 56, 1310
Hpy166II GTNNAC 8 cut(s) 307, 619, 730, 1067, 1093, 1160, 1283, 1393
Hpy8I GTNNAC 8 cut(s) 307, 619, 730, 1067, 1093, 1160, 1283, 1393
HpyAV CCTTC 5 cut(s) 380, 634, 1165, 1271, 1949
HpyCH4III ACNGT 3 cut(s) 68, 1097, 1555
HpyCH4IV ACGT 3 cut(s) 237, 245, 2084
HpyF10VI GCNNNNNNNGC 3 cut(s) 444, 1173, 2013
HpyF3I CTNAG 4 cut(s) 82, 686, 1218, 1832
HpySE526I ACGT 3 cut(s) 237, 245, 2084
HspAI GCGC 1 cut(s) 333
Ksp22I TGATCA 3 cut(s) 54, 420, 1992
Kzo9I GATC 5 cut(s) 54, 420, 898, 1599, 1992
LmnI GCTCC 1 cut(s) 687
Lsp1109I GCAGC 3 cut(s) 456, 896, 1211
LweI GCATC 8 cut(s) 34, 360, 612, 894, 1252, 1634, 1960, 2017
MaeI CTAG 3 cut(s) 465, 1014, 1638
MaeII ACGT 3 cut(s) 237, 245, 2084
MaeIII GTNAC 8 cut(s) 216, 1057, 1112, 1121, 1555, 1870, 2053, 2080
MalI GATC 5 cut(s) 56, 422, 900, 1601, 1994
MbiI CCGCTC 1 cut(s) 443
MboI GATC 5 cut(s) 54, 420, 898, 1599, 1992
MboII GAAGA 2 cut(s) 1511, 1742
MfeI CAATTG 1 cut(s) 1354
MhlI GDGCHC 2 cut(s) 243, 277
MluCI AATT 9 cut(s) 9, 192, 263, 553, 718, 1196, 1354, 1459, 1572
MlyI GAGTC 3 cut(s) 131, 413, 730
MslI CAYNNNNRTG 4 cut(s) 248, 708, 981, 2049
MspA1I CMGCKG 2 cut(s) 86, 1119
MspCI CTTAAG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 453
MunI CAATTG 1 cut(s) 1354
Mva1269I GAATGC 1 cut(s) 1027
MvaI CCWGG 1 cut(s) 453
MvnI CGCG 2 cut(s) 335, 1851
MwoI GCNNNNNNNGC 3 cut(s) 444, 1173, 2013
NcoI CCATGG 1 cut(s) 850
NdeII GATC 5 cut(s) 54, 420, 898, 1599, 1992
NlaIV GGNNCC 2 cut(s) 274, 570
NmuCI GTSAC 4 cut(s) 1121, 1870, 2053, 2080
NspI RCATGY 5 cut(s) 592, 678, 749, 980, 1108
NspV TTCGAA 1 cut(s) 261
PaeI GCATGC 2 cut(s) 678, 1108
PagI TCATGA 1 cut(s) 423
PciI ACATGT 1 cut(s) 588
PctI GAATGC 1 cut(s) 1027
PfeI GAWTC 6 cut(s) 668, 874, 1153, 1843, 1930, 2064
PkrI GCNGC 4 cut(s) 337, 471, 886, 1226
PleI GAGTC 3 cut(s) 130, 412, 730
PpsI GAGTC 3 cut(s) 130, 412, 730
PscI ACATGT 1 cut(s) 588
PshBI ATTAAT 4 cut(s) 1047, 1571, 1785, 2022
PsiI TTATAA 3 cut(s) 1563, 1878, 1983
Psp6I CCWGG 1 cut(s) 451
PspFI CCCAGC 4 cut(s) 86, 548, 1108, 1697
PspGI CCWGG 1 cut(s) 451
PspN4I GGNNCC 2 cut(s) 274, 570
PspPI GGNCC 2 cut(s) 1334, 1390
PstI CTGCAG 1 cut(s) 1694
PvuII CAGCTG 2 cut(s) 86, 1119
RsaI GTAC 2 cut(s) 308, 1517
RsaNI GTAC 2 cut(s) 307, 1516
RseI CAYNNNNRTG 4 cut(s) 248, 708, 981, 2049
SatI GCNGC 4 cut(s) 336, 470, 885, 1225
Sau3AI GATC 5 cut(s) 54, 420, 898, 1599, 1992
Sau96I GGNCC 2 cut(s) 1334, 1390
SchI GAGTC 3 cut(s) 131, 413, 730
ScrFI CCNGG 1 cut(s) 453
SduI GDGCHC 2 cut(s) 243, 277
SfaNI GCATC 8 cut(s) 34, 360, 612, 894, 1252, 1634, 1960, 2017
SfcI CTRYAG 3 cut(s) 1286, 1690, 1704
SfuI TTCGAA 1 cut(s) 261
SinI GGWCC 2 cut(s) 1334, 1390
SmiMI CAYNNNNRTG 4 cut(s) 248, 708, 981, 2049
SmlI CTYRAG 3 cut(s) 149, 1423, 1823
SmoI CTYRAG 3 cut(s) 149, 1423, 1823
SphI GCATGC 2 cut(s) 678, 1108
Sse9I AATT 9 cut(s) 9, 192, 263, 553, 718, 1196, 1354, 1459, 1572
SsiI CCGC 5 cut(s) 335, 338, 443, 913, 1851
SspI AATATT 2 cut(s) 258, 1777
SspMI CTAG 3 cut(s) 465, 1014, 1638
StyD4I CCNGG 1 cut(s) 451
StyI CCWWGG 2 cut(s) 561, 850
TaaI ACNGT 3 cut(s) 68, 1097, 1555
TaiI ACGT 3 cut(s) 240, 248, 2087
TaqI TCGA 1 cut(s) 261
TasI AATT 9 cut(s) 9, 192, 263, 553, 718, 1196, 1354, 1459, 1572
TatI WGTACW 1 cut(s) 306
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 6 cut(s) 668, 874, 1153, 1843, 1930, 2064
TscAI CASTG 4 cut(s) 1069, 1210, 1558, 1617
TseFI GTSAC 4 cut(s) 1121, 1870, 2053, 2080
TseI GCWGC 3 cut(s) 469, 884, 1224
Tsp45I GTSAC 4 cut(s) 1121, 1870, 2053, 2080
TspGWI ACGGA 1 cut(s) 972
TspRI CASTG 4 cut(s) 1069, 1210, 1558, 1617
Vha464I CTTAAG 1 cut(s) 149
VpaK11BI GGWCC 2 cut(s) 1334, 1390
VspI ATTAAT 4 cut(s) 1047, 1571, 1785, 2022
XapI RAATTY 2 cut(s) 9, 718
XbaI TCTAGA 1 cut(s) 1637
XceI RCATGY 5 cut(s) 592, 678, 749, 980, 1108
XmiI GTMKAC 1 cut(s) 1092
XspI CTAG 3 cut(s) 465, 1014, 1638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.