Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002954

Physical Location & Seq

Genomic Coordinates Forward (+)

18722426 .. 18733409

Gene Structure 10984 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0212100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAATAAGATAAAGATTGAGAAGATAGAAAACCTGCCGGCGAGGCAGGTGACGTTTTCAAAGAGGAGACAAGGGCTTTTCAAGAAAGCCGGAGCGTTATCAGTTCTCTGCGACGCTGAGGTTGCTGTCGTTGTCTTTTCTTCTACTGGCAAGCTCTATGAGTCCTCCAGCTCCAGTACGAAGGATGTCATTGCAAGGTACGAATGCACTGAAGATGTGGAAAAGGGCGACCAGCAGCCACCTCCTGAGCTCCAGCTGGAGATTAATGAGTGCATGAGGTTGAATAAGGAACTTGCGGACAAGATCCTCGAGCAAAGGCGGATGGAGGGGCAGGATCTCGAAGAGCTGAATATAGATGAATTGCAGAGATTGGAGAATAGGATTGAAGGAGGACTCAGCCGTGTGCTTCAAACTAAGGATAAAAGGATTATGAGTCAGATTCTGGCACTTGAAACAAAGGGAGCAGAGTTGACAGAAGCAAACAACCAATTAAGGCAGAGGTTAGGGATGCTATCCAATGGAAATGGAAATACTAGTGGTGTTGCTTTGGAGTCGGAGATCTCAATTGATGAAGAAGGTATGGCATCGGAATCTGCCACAGGTTCCGCCGGCTGCTACAGTATTGGTTCTTCGACTTCTTCCCTTGATGATGACTCCTCTGACAACCCCTTATCTCTCAAACTTGGGCTTCCTCGCTGTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019538 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

234

Amino Acids

25.63

Weight (kDa)

4.8

Isoelectric Point (pI)

63.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	8 - 54	4.8e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	88 - 168	2.2e-14	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08580 AT4G08580 AT5G17900
fragaria_vesca	FvH4_5g26300
malus_domestica	MD01G1001200.v1.1 MD15G1341800.v1.1
prunus_persica	Prupe.4G226700_v2.0.a1 Prupe.6G162200_v2.0.a1 Prupe.6G162200_v2.0.a1 Prupe.6G162200_v2.0.a1
pyrus_communis	pycom15g30230
rosa_chinensis	RchiOBHm_Chr2g0119581 RchiOBHm_Chr7g0222731
rosa_laevigata	RLG00000002028 RLG00000018143 RLG00000018473 RLG00000018476
rosa_multiflora	Rmu_co8450215.1_g000001 Rmu_sc0002868.1_g000058 Rmu_sc0007870.1_g000005 Rmu_sc0025009.1_g000003 Rmu_sc0038141.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124260 Rroxscaffold_3G00236520
rosa_rugosa	Rorug02G0222100 Rorug02G0222200 Rorug07G0212100 Rorug07G0212100
rosa_samantha	Rh2AG279700 Rh2BG291400 Rh2DG286400 Rh2DG305600 Rh7AG356300 Rh7BG344700 Rh7CG373800 Rh7DG350600
rosa_wichuraiana	Rw2G022340 Rw7G030230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	37
Acc36I	ACCTGC	2 cut(s)	37, 42
AciI	CCGC	3 cut(s)	296, 319, 606
AclWI	GGATC	2 cut(s)	298, 342
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	2 cut(s)	178, 200
AfiI	CCNNNNNNNGG	1 cut(s)	698
AgsI	TTSAA	6 cut(s)	60, 82, 283, 386, 410, 452
AhlI	ACTAGT	1 cut(s)	533
AluBI	AGCT	5 cut(s)	154, 171, 250, 256, 346
AluI	AGCT	5 cut(s)	154, 171, 250, 256, 346
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	2 cut(s)	298, 342
AlwNI	CAGNNNCTG	1 cut(s)	442
Ama87I	CYCGRG	1 cut(s)	308
ApeKI	GCWGC	2 cut(s)	235, 612
AseI	ATTAAT	1 cut(s)	264
AsuHPI	GGTGA	1 cut(s)	61
AvaI	CYCGRG	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	252
BarI	GAAGNNNNNNTAC	2 cut(s)	613, 645
Bbv12I	GWGCWC	1 cut(s)	252
BbvCI	CCTCAGC	1 cut(s)	117
BbvI	GCAGC	2 cut(s)	247, 599
BccI	CCATC	1 cut(s)	316
BceAI	ACGGC	1 cut(s)	384
BcoDI	GTCTC	1 cut(s)	61
BcuI	ACTAGT	1 cut(s)	533
BfaI	CTAG	1 cut(s)	534
BfmI	CTRYAG	1 cut(s)	616
BfuAI	ACCTGC	2 cut(s)	37, 42
BglI	GCCNNNNNGGC	1 cut(s)	43
BglII	AGATCT	1 cut(s)	558
BisI	GCNGC	2 cut(s)	236, 613
BlsI	GCNGC	2 cut(s)	237, 614
BmeT110I	CYCGRG	1 cut(s)	308
BmiI	GGNNCC	1 cut(s)	604
BmsI	GCATC	2 cut(s)	498, 593
BpmI	CTGGAG	4 cut(s)	151, 157, 236, 278
Bpu10I	CCTNAGC	2 cut(s)	117, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	698
Bse118I	RCCGGY	2 cut(s)	37, 608
Bse1I	ACTGG	2 cut(s)	151, 174
Bse3DI	GCAATG	1 cut(s)	189
BseGI	GGATG	3 cut(s)	190, 327, 513
BseLI	CCNNNNNNNGG	1 cut(s)	698
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	3 cut(s)	108, 237, 409
BseNI	ACTGG	2 cut(s)	151, 174
BseRI	GAGGAG	2 cut(s)	79, 646
BseXI	GCAGC	2 cut(s)	247, 599
BsiHKAI	GWGCWC	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	3 cut(s)	38, 90, 609
BslI	CCNNNNNNNGG	1 cut(s)	698
BsmAI	GTCTC	1 cut(s)	61
BsmI	GAATGC	1 cut(s)	209
BsoBI	CYCGRG	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	3 cut(s)	303, 334, 558
BspACI	CCGC	3 cut(s)	296, 319, 606
BspCNI	CTCAG	3 cut(s)	109, 238, 408
BspLI	GGNNCC	1 cut(s)	604
BspMI	ACCTGC	2 cut(s)	37, 42
BspPI	GGATC	2 cut(s)	298, 342
BspQI	GCTCTTC	1 cut(s)	336
BsrDI	GCAATG	1 cut(s)	189
BsrFI	RCCGGY	2 cut(s)	37, 608
BsrI	ACTGG	2 cut(s)	151, 174
BssAI	RCCGGY	2 cut(s)	37, 608
BssMI	GATC	3 cut(s)	303, 334, 558
Bst4CI	ACNGT	1 cut(s)	620
Bst6I	CTCTTC	1 cut(s)	336
BstC8I	GCNNGC	3 cut(s)	39, 152, 610
BstDEI	CTNAG	4 cut(s)	117, 246, 395, 414
BstF5I	GGATG	3 cut(s)	190, 327, 513
BstKTI	GATC	3 cut(s)	306, 337, 561
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	3 cut(s)	303, 334, 558
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 122
BstSFI	CTRYAG	1 cut(s)	616
BstV1I	GCAGC	2 cut(s)	247, 599
BstX2I	RGATCY	3 cut(s)	303, 334, 558
BstYI	RGATCY	3 cut(s)	303, 334, 558
BtsCI	GGATG	3 cut(s)	190, 327, 513
BtsIMutI	CAGTG	1 cut(s)	207
BveI	ACCTGC	2 cut(s)	37, 42
Cac8I	GCNNGC	3 cut(s)	39, 152, 610
CaiI	CAGNNNCTG	1 cut(s)	442
Cfr10I	RCCGGY	2 cut(s)	37, 608
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	2 cut(s)	177, 199
CviAII	CATG	1 cut(s)	274
CviQI	GTAC	2 cut(s)	177, 199
DdeI	CTNAG	4 cut(s)	117, 246, 395, 414
DpnI	GATC	3 cut(s)	305, 336, 560
DpnII	GATC	3 cut(s)	303, 334, 558
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
EciI	GGCGGA	2 cut(s)	334, 595
Ecl136II	GAGCTC	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	308
EcoICRI	GAGCTC	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	1 cut(s)	277
FaiI	YATR	5 cut(s)	159, 275, 353, 431, 581
FatI	CATG	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	236, 613
FokI	GGATG	3 cut(s)	197, 334, 520
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	2 cut(s)	236, 613
FspBI	CTAG	1 cut(s)	534
GluI	GCNGC	2 cut(s)	236, 613
GsuI	CTGGAG	4 cut(s)	151, 157, 236, 278
HapII	CCGG	3 cut(s)	38, 90, 609
HgaI	GACGC	1 cut(s)	122
Hin1II	CATG	1 cut(s)	277
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HinfI	GANTC	7 cut(s)	161, 393, 433, 439, 551, 590, 653
HpaII	CCGG	3 cut(s)	38, 90, 609
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	471
Hpy188I	TCNGA	4 cut(s)	438, 556, 589, 661
Hpy188III	TCNNGA	3 cut(s)	82, 245, 338
Hpy8I	GTNNAC	1 cut(s)	471
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	3 cut(s)	175, 380, 569
HpyCH4III	ACNGT	1 cut(s)	620
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	4 cut(s)	194, 207, 273, 364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 122
HpyF3I	CTNAG	4 cut(s)	117, 246, 395, 414
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	277
KroI	GCCGGC	2 cut(s)	37, 608
KroNI	GCCGGC	2 cut(s)	39, 610
Kzo9I	GATC	3 cut(s)	303, 334, 558
LguI	GCTCTTC	1 cut(s)	336
LmnI	GCTCC	4 cut(s)	92, 176, 255, 461
Lsp1109I	GCAGC	2 cut(s)	247, 599
LweI	GCATC	2 cut(s)	498, 593
MaeI	CTAG	1 cut(s)	534
MaeII	ACGT	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	3 cut(s)	305, 336, 560
MboI	GATC	3 cut(s)	303, 334, 558
MboII	GAAGA	7 cut(s)	34, 132, 224, 353, 584, 621, 630
MfeI	CAATTG	1 cut(s)	564
MflI	RGATCY	3 cut(s)	303, 334, 558
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	3 cut(s)	359, 488, 564
MlyI	GAGTC	5 cut(s)	170, 387, 442, 560, 647
MmeI	TCCRAC	1 cut(s)	534
MroNI	GCCGGC	2 cut(s)	37, 608
MseI	TTAA	2 cut(s)	264, 491
MspA1I	CMGCKG	1 cut(s)	256
MspI	CCGG	3 cut(s)	38, 90, 609
MunI	CAATTG	1 cut(s)	564
Mva1269I	GAATGC	1 cut(s)	209
MwoI	GCNNNNNNNGC	2 cut(s)	43, 122
NaeI	GCCGGC	2 cut(s)	39, 610
NdeII	GATC	3 cut(s)	303, 334, 558
NgoMIV	GCCGGC	2 cut(s)	37, 608
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	1 cut(s)	604
NmuCI	GTSAC	1 cut(s)	49
PaeR7I	CTCGAG	1 cut(s)	308
PaqCI	CACCTGC	1 cut(s)	37
PciSI	GCTCTTC	1 cut(s)	336
PctI	GAATGC	1 cut(s)	209
PdiI	GCCGGC	2 cut(s)	39, 610
PfeI	GAWTC	2 cut(s)	439, 590
PkrI	GCNGC	2 cut(s)	237, 614
PleI	GAGTC	5 cut(s)	169, 387, 441, 559, 647
PpsI	GAGTC	5 cut(s)	169, 387, 441, 559, 647
PshBI	ATTAAT	1 cut(s)	264
Psp124BI	GAGCTC	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	604
PspXI	VCTCGAGB	1 cut(s)	308
PstNI	CAGNNNCTG	1 cut(s)	442
PsuI	RGATCY	3 cut(s)	303, 334, 558
PvuII	CAGCTG	1 cut(s)	256
RsaI	GTAC	2 cut(s)	178, 200
RsaNI	GTAC	2 cut(s)	177, 199
SacI	GAGCTC	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	264, 491
SatI	GCNGC	2 cut(s)	236, 613
Sau3AI	GATC	3 cut(s)	303, 334, 558
SchI	GAGTC	5 cut(s)	170, 387, 442, 560, 647
SduI	GDGCHC	1 cut(s)	252
SfaNI	GCATC	2 cut(s)	498, 593
SfcI	CTRYAG	1 cut(s)	616
Sfr274I	CTCGAG	1 cut(s)	308
SlaI	CTCGAG	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SpeI	ACTAGT	1 cut(s)	533
Sse9I	AATT	3 cut(s)	359, 488, 564
SsiI	CCGC	3 cut(s)	296, 319, 606
SspMI	CTAG	1 cut(s)	534
SstI	GAGCTC	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	620
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	3 cut(s)	309, 339, 632
TasI	AATT	3 cut(s)	359, 488, 564
TfiI	GAWTC	2 cut(s)	439, 590
Tru1I	TTAA	2 cut(s)	264, 491
Tru9I	TTAA	2 cut(s)	264, 491
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	2 cut(s)	235, 612
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	3 cut(s)	17, 372, 585
TspRI	CASTG	1 cut(s)	214
VspI	ATTAAT	1 cut(s)	264
XhoI	CTCGAG	1 cut(s)	308
XspI	CTAG	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.