Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002954

Physical Location & Seq

Genomic Coordinates Forward (+)

15144804 .. 15149370

Gene Structure 4567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G162200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGTCGGTAACAGCAGGTGTTAGTGATACTGTGATTGCAGTCAGGGATAAGCTCAGAGGTAAAATTGGGCAAACAAAAGTTAAAAGGTATTGGCCTGGAAAAGCTCCCGAGTGGGCAGATGATGCCGACGAAGATGGGGATATTAGGATGTCCGCAGCTGCTTCATTGGAGAAAGCTTTCCCCACTGAGGAATATTCTGATGTTGTCAGAAAAGATGATCCTAGACTGCGCCGTTTGGCTGAGAGCAGGATAGATAATCGTGAGGATGCTCGAGCTGATCATAGGCGTATCCGGCAAGCTGAGATTGTTTCAACAATTGAAGAAGAAGCCAAGAGGCAGGAAGGGTTAGAAGCGGAGGAAGAGGACGCAGATGCTTTGGAGGAAAGAAGAAGAAGGATCAAGGAGAAGTTGCGTCAAAGGGAGCAAGAAGAAGCTCCACTCCTGTCGGAAGATGAGGAAGAAGTAAAGGAAGAGGAGGAAGAAGAGTCTGAGTATGATACTGACTCAGAAGAAGAGCTTACTGGTATGGTGATGCTGAAGCCTGTCTTTGTGCCCAAGTCAGAGAGAGATACTATTGCTGAACGTGAGCGACTTGAGGCTGAAGAACGAGCCCTTGAGGAATCTAGGAAGAGGAATTTGGAGGAAAGGAAGAGAGAGACAAAGCAGATTGTGGTTGAGGAGATTCGGAAGGACGAAGAGATTCAGAAGGGTTTGGAACAGGAAGCAAATATTGCTGATATTGATACTGATGATGAAGTAAACGAGGCAGAGGAGTATGAAACTTGGAAGGCAAGAGAGATTGCCAGGATCAAGAGGGATAGGGAGGACCGGGAAGCAATGATAAAGGAGAAGGAAGAGATTGAAAGGGTTAGAAACATGACAGAGGAAGAGAGGAGGGAGTGGGAGAGGAAGCATCCGAAAGCTGCACCACGACCAAAGCAGAAGTGGAGATTTATGCAGAAATATTACCACAAGGGTGCTTTCTTCCAGTCAGAACCTGATGACTATGCTGCAACTGTTGGAACAGATGGAATTTACACGCGTGATTTCTCTTCCCCAACTGGAGAAGATAAGATGGACAAAACAATATTGCCCAAGGTCATGCAGGTCAAACATTTTGGTCGTAGTGGAAGGACGAAATGGACGCATCTTGTCAATGAGGATACCACTGATTGGAACAATCCATGGACGTACAATGATCCTCTACGAGCGAAGTATAATGCTAAAATGGCCGGAATGAACACGCCTATTATAAAACCCAAAGGAAGCAAGAAATTGAAGGATTGGGAGTCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFAP1

Protein Analysis

433

Amino Acids

51.01

Weight (kDa)

5.04

Isoelectric Point (pI)

62.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08580 AT4G08580 AT5G17900
fragaria_vesca	FvH4_5g26300
malus_domestica	MD01G1001200.v1.1 MD15G1341800.v1.1
prunus_persica	Prupe.4G226700_v2.0.a1 Prupe.6G162200_v2.0.a1 Prupe.6G162200_v2.0.a1 Prupe.6G162200_v2.0.a1
pyrus_communis	pycom15g30230
rosa_chinensis	RchiOBHm_Chr2g0119581 RchiOBHm_Chr7g0222731
rosa_laevigata	RLG00000002028 RLG00000018143 RLG00000018473 RLG00000018476
rosa_multiflora	Rmu_co8450215.1_g000001 Rmu_sc0002868.1_g000058 Rmu_sc0007870.1_g000005 Rmu_sc0025009.1_g000003 Rmu_sc0038141.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124260 Rroxscaffold_3G00236520
rosa_rugosa	Rorug02G0222100 Rorug02G0222200 Rorug07G0212100 Rorug07G0212100
rosa_samantha	Rh2AG279700 Rh2BG291400 Rh2DG286400 Rh2DG305600 Rh7AG356300 Rh7BG344700 Rh7CG373800 Rh7DG350600
rosa_wichuraiana	Rw2G022340 Rw7G030230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1253
AarI	CACCTGC	1 cut(s)	5
Acc36I	ACCTGC	2 cut(s)	5, 1096
AccB7I	CCANNNNNTGG	1 cut(s)	1173
AccII	CGCG	1 cut(s)	1042
AciI	CCGC	2 cut(s)	153, 353
AclWI	GGATC	4 cut(s)	212, 404, 815, 1193
AcoI	YGGCCR	1 cut(s)	1230
AcsI	RAATTY	2 cut(s)	634, 1032
AcuI	CTGAAG	2 cut(s)	557, 621
AfaI	GTAC	1 cut(s)	1193
AfiI	CCNNNNNNNGG	2 cut(s)	187, 1173
AflIII	ACRYGT	1 cut(s)	1040
AgsI	TTSAA	4 cut(s)	312, 320, 863, 1279
AjnI	CCWGG	2 cut(s)	94, 803
AjuI	GAANNNNNNNTTGG	2 cut(s)	620, 652
AleI	CACNNNNGTG	1 cut(s)	975
AluBI	AGCT	9 cut(s)	52, 104, 158, 176, 275, 299, 434, 517, 923
AluI	AGCT	9 cut(s)	52, 104, 158, 176, 275, 299, 434, 517, 923
Alw26I	GTCTC	1 cut(s)	650
AlwI	GGATC	4 cut(s)	212, 404, 815, 1193
AlwNI	CAGNNNCTG	1 cut(s)	998
Ama87I	CYCGRG	2 cut(s)	107, 270
AoxI	GGCC	2 cut(s)	92, 1230
ApeKI	GCWGC	4 cut(s)	155, 158, 923, 1010
ApoI	RAATTY	2 cut(s)	634, 1032
Asp700I	GAANNNNTTC	2 cut(s)	176, 699
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	826
AsuC2I	CCSGG	1 cut(s)	830
AsuHPI	GGTGA	1 cut(s)	541
AvaI	CYCGRG	2 cut(s)	107, 270
AvaII	GGWCC	1 cut(s)	826
BaeGI	GKGCMC	1 cut(s)	555
BanII	GRGCYC	1 cut(s)	613
BbvI	GCAGC	4 cut(s)	145, 167, 910, 997
BccI	CCATC	3 cut(s)	128, 1022, 1069
BceAI	ACGGC	1 cut(s)	216
BciT130I	CCWGG	2 cut(s)	96, 805
BciVI	GTATCC	2 cut(s)	299, 1156
BclI	TGATCA	1 cut(s)	277
BcnI	CCSGG	1 cut(s)	830
BcoDI	GTCTC	1 cut(s)	650
BfaI	CTAG	2 cut(s)	222, 624
BfuAI	ACCTGC	2 cut(s)	5, 1096
BfuI	GTATCC	2 cut(s)	299, 1156
BisI	GCNGC	4 cut(s)	156, 159, 924, 1011
BlsI	GCNGC	4 cut(s)	157, 160, 925, 1012
Bme1390I	CCNGG	3 cut(s)	96, 805, 830
Bme18I	GGWCC	1 cut(s)	826
BmeT110I	CYCGRG	2 cut(s)	107, 270
BmgT120I	GGNCC	1 cut(s)	826
BmrFI	CCNGG	3 cut(s)	96, 805, 830
BmsI	GCATC	6 cut(s)	112, 256, 361, 522, 922, 1156
BpmI	CTGGAG	1 cut(s)	1083
BpuEI	CTTGAG	2 cut(s)	614, 635
BpuMI	CCSGG	1 cut(s)	830
BsaJI	CCNNGG	2 cut(s)	1095, 1184
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 1173
Bse1I	ACTGG	3 cut(s)	526, 988, 1066
Bse3DI	GCAATG	1 cut(s)	843
BseBI	CCWGG	2 cut(s)	96, 805
BseDI	CCNNGG	2 cut(s)	1095, 1184
BseGI	GGATG	3 cut(s)	153, 271, 913
BseLI	CCNNNNNNNGG	2 cut(s)	187, 1173
BseMI	GCAATG	1 cut(s)	843
BseMII	CTCAG	6 cut(s)	67, 177, 231, 291, 480, 519
BseNI	ACTGG	3 cut(s)	526, 988, 1066
BseRI	GAGGAG	4 cut(s)	488, 692, 785, 907
BseSI	GKGCMC	1 cut(s)	555
BseXI	GCAGC	4 cut(s)	145, 167, 910, 997
BsgI	GTGCAG	1 cut(s)	909
Bsh1236I	CGCG	1 cut(s)	1042
BshFI	GGCC	2 cut(s)	94, 1232
BsiHKCI	CYCGRG	2 cut(s)	107, 270
BsiSI	CCGG	3 cut(s)	292, 829, 1233
BslI	CCNNNNNNNGG	2 cut(s)	187, 1173
BsmAI	GTCTC	1 cut(s)	650
BsnI	GGCC	2 cut(s)	94, 1232
BsoBI	CYCGRG	2 cut(s)	107, 270
Bsp1286I	GDGCHC	2 cut(s)	555, 613
Bsp143I	GATC	5 cut(s)	217, 277, 396, 807, 1198
Bsp19I	CCATGG	1 cut(s)	1184
BspACI	CCGC	2 cut(s)	153, 353
BspANI	GGCC	2 cut(s)	94, 1232
BspCNI	CTCAG	6 cut(s)	66, 178, 232, 292, 481, 518
BspFNI	CGCG	1 cut(s)	1042
BspMI	ACCTGC	2 cut(s)	5, 1096
BspPI	GGATC	4 cut(s)	212, 404, 815, 1193
BspQI	GCTCTTC	1 cut(s)	507
BsrDI	GCAATG	1 cut(s)	843
BsrI	ACTGG	3 cut(s)	526, 988, 1066
BssECI	CCNNGG	2 cut(s)	1095, 1184
BssMI	GATC	5 cut(s)	217, 277, 396, 807, 1198
BssT1I	CCWWGG	2 cut(s)	1095, 1184
Bst2UI	CCWGG	2 cut(s)	96, 805
Bst4CI	ACNGT	2 cut(s)	31, 1018
BstAPI	GCANNNNNTGC	2 cut(s)	122, 731
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	6 cut(s)	53, 186, 240, 300, 489, 505
BstDSI	CCRYGG	1 cut(s)	1184
BstF5I	GGATG	3 cut(s)	153, 271, 913
BstFNI	CGCG	1 cut(s)	1042
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	5 cut(s)	220, 280, 399, 810, 1201
BstMAI	GTCTC	1 cut(s)	650
BstMBI	GATC	5 cut(s)	217, 277, 396, 807, 1198
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 292, 731, 1229
BstNI	CCWGG	2 cut(s)	96, 805
BstSCI	CCNGG	3 cut(s)	94, 803, 828
BstSLI	GKGCMC	1 cut(s)	555
BstUI	CGCG	1 cut(s)	1042
BstV1I	GCAGC	4 cut(s)	145, 167, 910, 997
BsuI	GTATCC	2 cut(s)	299, 1156
BsuRI	GGCC	2 cut(s)	94, 1232
BtgI	CCRYGG	1 cut(s)	1184
BtsCI	GGATG	3 cut(s)	153, 271, 913
BtsIMutI	CAGTG	2 cut(s)	183, 1167
BveI	ACCTGC	2 cut(s)	5, 1096
Cac8I	GCNNGC	1 cut(s)	297
CaiI	CAGNNNCTG	1 cut(s)	998
CfoI	GCGC	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	826
CseI	GACGC	3 cut(s)	374, 401, 1153
Csp6I	GTAC	1 cut(s)	1192
CviAII	CATG	3 cut(s)	877, 1102, 1185
CviQI	GTAC	1 cut(s)	1192
DdeI	CTNAG	6 cut(s)	53, 186, 240, 300, 489, 505
DpnI	GATC	5 cut(s)	219, 279, 398, 809, 1200
DpnII	GATC	5 cut(s)	217, 277, 396, 807, 1198
EaeI	YGGCCR	1 cut(s)	1230
Eco130I	CCWWGG	2 cut(s)	1095, 1184
Eco24I	GRGCYC	1 cut(s)	613
Eco47I	GGWCC	1 cut(s)	826
Eco57I	CTGAAG	2 cut(s)	557, 621
Eco88I	CYCGRG	2 cut(s)	107, 270
EcoRII	CCWGG	2 cut(s)	94, 803
EcoT14I	CCWWGG	2 cut(s)	1095, 1184
EcoT38I	GRGCYC	1 cut(s)	613
ErhI	CCWWGG	2 cut(s)	1095, 1184
FaeI	CATG	3 cut(s)	880, 1105, 1188
FalI	AAGNNNNNCTT	4 cut(s)	501, 533, 530, 562
FatI	CATG	3 cut(s)	876, 1101, 1184
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	4 cut(s)	156, 159, 924, 1011
FokI	GGATG	3 cut(s)	160, 278, 900
FriOI	GRGCYC	1 cut(s)	613
Fsp4HI	GCNGC	4 cut(s)	156, 159, 924, 1011
FspBI	CTAG	2 cut(s)	222, 624
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	4 cut(s)	156, 159, 924, 1011
GsuI	CTGGAG	1 cut(s)	1083
HaeIII	GGCC	2 cut(s)	94, 1232
HapII	CCGG	3 cut(s)	292, 829, 1233
HgaI	GACGC	3 cut(s)	374, 401, 1153
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	3 cut(s)	880, 1105, 1188
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	6 cut(s)	485, 503, 620, 682, 700, 1289
HpaII	CCGG	3 cut(s)	292, 829, 1233
HphI	GGTGA	1 cut(s)	541
Hpy166II	GTNNAC	1 cut(s)	760
Hpy188III	TCNNGA	3 cut(s)	107, 260, 811
Hpy8I	GTNNAC	1 cut(s)	760
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	8 cut(s)	335, 387, 682, 700, 781, 844, 1125, 1273
HpyCH4III	ACNGT	2 cut(s)	31, 1018
HpyCH4IV	ACGT	2 cut(s)	583, 1190
HpyCH4V	TGCA	5 cut(s)	38, 926, 958, 1013, 1105
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 292, 731, 1229
HpyF3I	CTNAG	6 cut(s)	53, 186, 240, 300, 489, 505
HpySE526I	ACGT	2 cut(s)	583, 1190
Hsp92II	CATG	3 cut(s)	880, 1105, 1188
HspAI	GCGC	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	5 cut(s)	217, 277, 396, 807, 1198
LguI	GCTCTTC	1 cut(s)	507
LmnI	GCTCC	3 cut(s)	109, 421, 439
Lsp1109I	GCAGC	4 cut(s)	145, 167, 910, 997
LweI	GCATC	6 cut(s)	112, 256, 361, 522, 922, 1156
MaeI	CTAG	2 cut(s)	222, 624
MaeII	ACGT	2 cut(s)	583, 1190
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	5 cut(s)	219, 279, 398, 809, 1200
MboI	GATC	5 cut(s)	217, 277, 396, 807, 1198
MfeI	CAATTG	1 cut(s)	315
MhlI	GDGCHC	2 cut(s)	555, 613
MluCI	AATT	5 cut(s)	63, 315, 634, 1032, 1274
MluI	ACGCGT	1 cut(s)	1040
MlyI	GAGTC	3 cut(s)	494, 497, 1298
MmeI	TCCRAC	2 cut(s)	426, 1000
MroXI	GAANNNNTTC	2 cut(s)	176, 699
MseI	TTAA	1 cut(s)	81
MslI	CAYNNNNRTG	1 cut(s)	975
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	3 cut(s)	292, 829, 1233
MspR9I	CCNGG	3 cut(s)	96, 805, 830
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	2 cut(s)	96, 805
MvnI	CGCG	1 cut(s)	1042
MwoI	GCNNNNNNNGC	4 cut(s)	122, 292, 731, 1229
NciI	CCSGG	1 cut(s)	830
NcoI	CCATGG	1 cut(s)	1184
NdeII	GATC	5 cut(s)	217, 277, 396, 807, 1198
NlaIII	CATG	3 cut(s)	880, 1105, 1188
OliI	CACNNNNGTG	1 cut(s)	975
PaeR7I	CTCGAG	1 cut(s)	270
PaqCI	CACCTGC	1 cut(s)	5
PciSI	GCTCTTC	1 cut(s)	507
PdmI	GAANNNNTTC	2 cut(s)	176, 699
PfeI	GAWTC	3 cut(s)	620, 682, 700
PflMI	CCANNNNNTGG	1 cut(s)	1173
PkrI	GCNGC	4 cut(s)	157, 160, 925, 1012
PleI	GAGTC	3 cut(s)	493, 497, 1297
PpsI	GAGTC	3 cut(s)	493, 497, 1297
PsiI	TTATAA	1 cut(s)	1253
Psp6I	CCWGG	2 cut(s)	94, 803
PspGI	CCWGG	2 cut(s)	94, 803
PspPI	GGNCC	1 cut(s)	826
PspXI	VCTCGAGB	1 cut(s)	270
PstNI	CAGNNNCTG	1 cut(s)	998
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	1 cut(s)	1193
RsaNI	GTAC	1 cut(s)	1192
RseI	CAYNNNNRTG	1 cut(s)	975
SapI	GCTCTTC	1 cut(s)	507
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	4 cut(s)	156, 159, 924, 1011
Sau3AI	GATC	5 cut(s)	217, 277, 396, 807, 1198
Sau96I	GGNCC	1 cut(s)	826
SchI	GAGTC	3 cut(s)	494, 497, 1298
ScrFI	CCNGG	3 cut(s)	96, 805, 830
SduI	GDGCHC	2 cut(s)	555, 613
SfaNI	GCATC	6 cut(s)	112, 256, 361, 522, 922, 1156
Sfr274I	CTCGAG	1 cut(s)	270
SinI	GGWCC	1 cut(s)	826
SlaI	CTCGAG	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	975
SmlI	CTYRAG	3 cut(s)	270, 593, 614
SmoI	CTYRAG	3 cut(s)	270, 593, 614
Sse9I	AATT	5 cut(s)	63, 315, 634, 1032, 1274
SsiI	CCGC	2 cut(s)	153, 353
SspI	AATATT	4 cut(s)	194, 730, 965, 1089
SspMI	CTAG	2 cut(s)	222, 624
StyD4I	CCNGG	3 cut(s)	94, 803, 828
StyI	CCWWGG	2 cut(s)	1095, 1184
TaaI	ACNGT	2 cut(s)	31, 1018
TaiI	ACGT	2 cut(s)	586, 1193
TaqI	TCGA	1 cut(s)	271
TasI	AATT	5 cut(s)	63, 315, 634, 1032, 1274
TfiI	GAWTC	3 cut(s)	620, 682, 700
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	2 cut(s)	190, 1174
TseI	GCWGC	4 cut(s)	155, 158, 923, 1010
TspDTI	ATGAA	4 cut(s)	153, 768, 792, 1253
TspRI	CASTG	2 cut(s)	190, 1174
Van91I	CCANNNNNTGG	1 cut(s)	1173
VpaK11BI	GGWCC	1 cut(s)	826
XapI	RAATTY	2 cut(s)	634, 1032
XcmI	CCANNNNNNNNNTGG	1 cut(s)	942
XhoI	CTCGAG	1 cut(s)	270
XmnI	GAANNNNTTC	2 cut(s)	176, 699
XspI	CTAG	2 cut(s)	222, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.