Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025009.1

Orthogroup ID

OG0002954

Physical Location & Seq

Genomic Coordinates Forward (+)

8944 .. 12523

Gene Structure 3580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025009.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1527 bp

atgtcggtgactgcaggtgttagtgacactgtgattgccattagggataagctgagaggtaaaattggacagactaaagttaaaaggtattggcctggaaaagctcctgagtggggagatgatgccgacgaagatggcgatattaggttgtctgcggctgcctccctcgagaaagccttccccactcaggattattccgatattgcaaggaaagatgatcctaggctgcgtcgtttggctgagagcaggatagataatcgcgatgatgttagggctgatcacaggcgtatccgccaagctgaaattgtttcaactattgaagaggaagccaggaggcaggaagggatagatgccgaagaagaggatcctgatgctttagaggaaaggagaagaaggattaaggaaaggttgcgtgagagggagcaagaagaagctgcactcctcccctccgaagatgaggaagaagataaggaagaagaggaggaggaagaggaatcagagtattcaactgactcagaagatgagcatggtggtatgatgatgctcaagccagtctttgttcccaaggctgagagagataccatcgctgaacgtgagcgaattgaggcagaagaactggcctttgaggaagcaaggaagaaaaaattggaggagaggaagagagagacaaagcagattgtggttgaggaaatccgaaaggatgaagagatacagaaaagtatggaacaggatgctaacattgctgatattgatactgatgatgaacttaacgaggcagaggagtatgaagcttggaaggcaagagagattgccaggatcaagagggatagggaggaaagagaggcgatgttgaaggaaaaggaagagattgaaagggtaagaaatatgacagaggaagagaggagggaatgggagaggaagaatcctaaacctgcaccaaaaccaaagcaaaagtggaggttcatgcagaagtaccaccacaaaggtgctttcttccagtcagacgcagatgaccatgctgcaactgtgggaacagatggaatttttactcgtgatttctctgctccaactggagaagataaaatggacaaaactatattgccgaaggtcatgcaagtcaagcatttcggtcgaagtggaaggacaaaatggacccatcttgtcaatgaggatactactgactggaacaatccgtggacctacaatgatcctcttcgggcaaagtataatgcaaaaatggctggaatgaatgcacctatagaaaaacccagaggaagcaagaaattgaaggatcgggaaatttggtcatccatcttgaccctcctcgtgccagaggatggtaagtatgaacttgtcattaggccaacagctcgccacctcctttgtggagcgtatcttctcaaggctttggccacctctcacggcacaagtccttttctgtgggtaataattaactccccgaactgctgccccaagatgacagcatcttccggtgctagtggtgtgcatgcaagaccactgcgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFAP1

Protein Analysis

508

Amino Acids

59.01

Weight (kDa)

5.22

Isoelectric Point (pI)

58.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08580 AT4G08580 AT5G17900
fragaria_vesca	FvH4_5g26300
malus_domestica	MD01G1001200.v1.1 MD15G1341800.v1.1
prunus_persica	Prupe.4G226700_v2.0.a1 Prupe.6G162200_v2.0.a1 Prupe.6G162200_v2.0.a1 Prupe.6G162200_v2.0.a1
pyrus_communis	pycom15g30230
rosa_chinensis	RchiOBHm_Chr2g0119581 RchiOBHm_Chr7g0222731
rosa_laevigata	RLG00000002028 RLG00000018143 RLG00000018473 RLG00000018476
rosa_multiflora	Rmu_co8450215.1_g000001 Rmu_sc0002868.1_g000058 Rmu_sc0007870.1_g000005 Rmu_sc0025009.1_g000003 Rmu_sc0038141.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124260 Rroxscaffold_3G00236520
rosa_rugosa	Rorug02G0222100 Rorug02G0222200 Rorug07G0212100 Rorug07G0212100
rosa_samantha	Rh2AG279700 Rh2BG291400 Rh2DG286400 Rh2DG305600 Rh7AG356300 Rh7BG344700 Rh7CG373800 Rh7DG350600
rosa_wichuraiana	Rw2G022340 Rw7G030230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	5
Acc36I	ACCTGC	2 cut(s)	5, 940
AccB7I	CCANNNNNTGG	1 cut(s)	1337
AccII	CGCG	1 cut(s)	261
AciI	CCGC	2 cut(s)	155, 292
AclWI	GGATC	6 cut(s)	212, 359, 372, 824, 1202, 1299
AcoI	YGGCCR	1 cut(s)	1410
AcsI	RAATTY	2 cut(s)	1041, 1299
AfaI	GTAC	1 cut(s)	974
AfiI	CCNNNNNNNGG	3 cut(s)	113, 187, 1337
AgsI	TTSAA	6 cut(s)	312, 320, 507, 853, 872, 1288
AjnI	CCWGG	3 cut(s)	94, 329, 812
AjuI	GAANNNNNNNTTGG	2 cut(s)	629, 661
AleI	CACNNNNGTG	1 cut(s)	984
AluBI	AGCT	6 cut(s)	52, 104, 299, 434, 791, 1370
AluI	AGCT	6 cut(s)	52, 104, 299, 434, 791, 1370
Alw26I	GTCTC	1 cut(s)	659
AlwI	GGATC	6 cut(s)	212, 359, 372, 824, 1202, 1299
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	4 cut(s)	92, 618, 1361, 1410
ApeKI	GCWGC	5 cut(s)	158, 226, 434, 1019, 1467
ApoI	RAATTY	2 cut(s)	1041, 1299
Asp700I	GAANNNNTTC	1 cut(s)	176
AspA2I	CCTAGG	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	1524
AspS9I	GGNCC	2 cut(s)	1152, 1197
AsuHPI	GGTGA	1 cut(s)	19
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	2 cut(s)	1152, 1197
AvrII	CCTAGG	1 cut(s)	221
BaeI	ACNNNNGTAYC	2 cut(s)	271, 304
BalI	TGGCCA	1 cut(s)	1412
BamHI	GGATCC	1 cut(s)	364
BauI	CACGAG	2 cut(s)	1050, 1325
BbvI	GCAGC	5 cut(s)	145, 213, 421, 1006, 1454
BccI	CCATC	6 cut(s)	128, 590, 1031, 1164, 1319, 1331
BceAI	ACGGC	1 cut(s)	1438
BcgI	CGANNNNNNTGC	4 cut(s)	1093, 1112, 1127, 1146
BciT130I	CCWGG	3 cut(s)	96, 331, 814
BciVI	GTATCC	2 cut(s)	299, 1165
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	659
BfaI	CTAG	3 cut(s)	222, 1497, 1525
BfmI	CTRYAG	2 cut(s)	12, 1257
BfuAI	ACCTGC	2 cut(s)	5, 940
BfuI	GTATCC	2 cut(s)	299, 1165
BisI	GCNGC	6 cut(s)	156, 159, 227, 435, 1020, 1468
BlnI	CCTAGG	1 cut(s)	221
BlsI	GCNGC	6 cut(s)	157, 160, 228, 436, 1021, 1469
Bme1390I	CCNGG	3 cut(s)	96, 331, 814
Bme18I	GGWCC	2 cut(s)	1152, 1197
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	2 cut(s)	1152, 1197
BmiI	GGNNCC	2 cut(s)	366, 1154
BmrFI	CCNGG	3 cut(s)	96, 331, 814
BmsI	GCATC	6 cut(s)	112, 340, 361, 531, 721, 1493
BpmI	CTGGAG	1 cut(s)	1092
BpuEI	CTTGAG	2 cut(s)	530, 1385
BsaJI	CCNNGG	3 cut(s)	221, 564, 1193
BsaWI	WCCGGW	1 cut(s)	1490
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 187, 1337
Bse1I	ACTGG	5 cut(s)	551, 621, 997, 1075, 1187
Bse3DI	GCAATG	1 cut(s)	738
BseBI	CCWGG	3 cut(s)	96, 331, 814
BseDI	CCNNGG	3 cut(s)	221, 564, 1193
BseGI	GGATG	4 cut(s)	706, 736, 1307, 1342
BseLI	CCNNNNNNNGG	3 cut(s)	113, 187, 1337
BseMI	GCAATG	1 cut(s)	738
BseMII	CTCAG	6 cut(s)	44, 99, 200, 231, 528, 561
BseNI	ACTGG	5 cut(s)	551, 621, 997, 1075, 1187
BseRI	GAGGAG	7 cut(s)	431, 494, 497, 665, 794, 916, 1313
BseXI	GCAGC	5 cut(s)	145, 213, 421, 1006, 1454
BsgI	GTGCAG	2 cut(s)	420, 918
Bsh1236I	CGCG	1 cut(s)	261
Bsh1285I	CGRYCG	1 cut(s)	1132
BshFI	GGCC	4 cut(s)	94, 620, 1363, 1412
BsiEI	CGRYCG	1 cut(s)	1132
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	1491
BslI	CCNNNNNNNGG	3 cut(s)	113, 187, 1337
BsmAI	GTCTC	1 cut(s)	659
BsmI	GAATGC	1 cut(s)	1255
BsnI	GGCC	4 cut(s)	94, 620, 1363, 1412
BsoBI	CYCGRG	1 cut(s)	167
Bsp143I	GATC	6 cut(s)	217, 277, 364, 816, 1207, 1291
Bsp68I	TCGCGA	1 cut(s)	261
BspACI	CCGC	2 cut(s)	155, 292
BspANI	GGCC	4 cut(s)	94, 620, 1363, 1412
BspCNI	CTCAG	6 cut(s)	45, 100, 199, 232, 527, 562
BspFNI	CGCG	1 cut(s)	261
BspLI	GGNNCC	2 cut(s)	366, 1154
BspMAI	CTGCAG	1 cut(s)	16
BspMI	ACCTGC	2 cut(s)	5, 940
BspPI	GGATC	6 cut(s)	212, 359, 372, 824, 1202, 1299
BsrDI	GCAATG	1 cut(s)	738
BsrI	ACTGG	5 cut(s)	551, 621, 997, 1075, 1187
BssECI	CCNNGG	3 cut(s)	221, 564, 1193
BssMI	GATC	6 cut(s)	217, 277, 364, 816, 1207, 1291
BssSI	CACGAG	2 cut(s)	1050, 1325
BssT1I	CCWWGG	2 cut(s)	221, 564
Bst2BI	CACGAG	2 cut(s)	1050, 1325
Bst2UI	CCWGG	3 cut(s)	96, 331, 814
Bst4CI	ACNGT	2 cut(s)	31, 1027
Bst6I	CTCTTC	9 cut(s)	315, 354, 471, 483, 653, 699, 858, 891, 1218
BstC8I	GCNNGC	2 cut(s)	1372, 1509
BstDEI	CTNAG	6 cut(s)	53, 108, 186, 240, 514, 570
BstDSI	CCRYGG	1 cut(s)	1193
BstF5I	GGATG	4 cut(s)	706, 736, 1307, 1342
BstFNI	CGCG	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	1524
BstKTI	GATC	6 cut(s)	220, 280, 367, 819, 1210, 1294
BstMAI	GTCTC	1 cut(s)	659
BstMBI	GATC	6 cut(s)	217, 277, 364, 816, 1207, 1291
BstMCI	CGRYCG	1 cut(s)	1132
BstMWI	GCNNNNNNNGC	4 cut(s)	740, 797, 1120, 1238
BstNI	CCWGG	3 cut(s)	96, 331, 814
BstNSI	RCATGY	1 cut(s)	1511
BstSCI	CCNGG	3 cut(s)	94, 329, 812
BstSFI	CTRYAG	2 cut(s)	12, 1257
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	5 cut(s)	145, 213, 421, 1006, 1454
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuI	GTATCC	2 cut(s)	299, 1165
BsuRI	GGCC	4 cut(s)	94, 620, 1363, 1412
BtgI	CCRYGG	1 cut(s)	1193
BtgZI	GCGATG	3 cut(s)	276, 568, 860
BtsCI	GGATG	4 cut(s)	706, 736, 1307, 1342
BtsI	GCAGTG	1 cut(s)	1517
BtsIMutI	CAGTG	2 cut(s)	27, 1517
BtuMI	TCGCGA	1 cut(s)	261
BveI	ACCTGC	2 cut(s)	5, 940
Cac8I	GCNNGC	2 cut(s)	1372, 1509
CfoI	GCGC	1 cut(s)	1524
Cfr13I	GGNCC	2 cut(s)	1152, 1197
CseI	GACGC	2 cut(s)	218, 1013
Csp6I	GTAC	1 cut(s)	973
CspCI	CAANNNNNGTGG	2 cut(s)	1364, 1399
CviAII	CATG	5 cut(s)	527, 964, 1016, 1111, 1508
CviQI	GTAC	1 cut(s)	973
DdeI	CTNAG	6 cut(s)	53, 108, 186, 240, 514, 570
DpnI	GATC	6 cut(s)	219, 279, 366, 818, 1209, 1293
DpnII	GATC	6 cut(s)	217, 277, 364, 816, 1207, 1291
EaeI	YGGCCR	1 cut(s)	1410
Eam1104I	CTCTTC	9 cut(s)	315, 354, 471, 483, 653, 699, 858, 891, 1218
EarI	CTCTTC	9 cut(s)	315, 354, 471, 483, 653, 699, 858, 891, 1218
EciI	GGCGGA	1 cut(s)	281
Eco130I	CCWWGG	2 cut(s)	221, 564
Eco47I	GGWCC	2 cut(s)	1152, 1197
Eco88I	CYCGRG	1 cut(s)	167
EcoRII	CCWGG	3 cut(s)	94, 329, 812
EcoT14I	CCWWGG	2 cut(s)	221, 564
ErhI	CCWWGG	2 cut(s)	221, 564
FaeI	CATG	5 cut(s)	530, 967, 1019, 1114, 1511
FalI	AAGNNNNNCTT	2 cut(s)	539, 571
FatI	CATG	5 cut(s)	526, 963, 1015, 1110, 1507
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	6 cut(s)	156, 159, 227, 435, 1020, 1468
FokI	GGATG	4 cut(s)	713, 743, 1294, 1349
Fsp4HI	GCNGC	6 cut(s)	156, 159, 227, 435, 1020, 1468
FspBI	CTAG	3 cut(s)	222, 1497, 1525
GlaI	GCGC	1 cut(s)	1523
GluI	GCNGC	6 cut(s)	156, 159, 227, 435, 1020, 1468
GsuI	CTGGAG	1 cut(s)	1092
HaeIII	GGCC	4 cut(s)	94, 620, 1363, 1412
HapII	CCGG	1 cut(s)	1491
HgaI	GACGC	2 cut(s)	218, 1013
HhaI	GCGC	1 cut(s)	1524
Hin1II	CATG	5 cut(s)	530, 967, 1019, 1114, 1511
Hin6I	GCGC	1 cut(s)	1522
HinP1I	GCGC	1 cut(s)	1522
HindIII	AAGCTT	1 cut(s)	789
HinfI	GANTC	3 cut(s)	494, 512, 922
HpaII	CCGG	1 cut(s)	1491
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	1197
Hpy188I	TCNGA	6 cut(s)	199, 451, 499, 517, 695, 1003
Hpy188III	TCNNGA	9 cut(s)	107, 169, 188, 260, 368, 820, 1052, 1295, 1315
Hpy8I	GTNNAC	1 cut(s)	1197
Hpy99I	CGWCG	2 cut(s)	131, 234
HpyAV	CCTTC	8 cut(s)	187, 335, 387, 790, 847, 1099, 1134, 1282
HpyCH4III	ACNGT	2 cut(s)	31, 1027
HpyCH4IV	ACGT	1 cut(s)	592
HpyF10VI	GCNNNNNNNGC	4 cut(s)	740, 797, 1120, 1238
HpyF3I	CTNAG	6 cut(s)	53, 108, 186, 240, 514, 570
HpySE526I	ACGT	1 cut(s)	592
Hsp92II	CATG	5 cut(s)	530, 967, 1019, 1114, 1511
HspAI	GCGC	1 cut(s)	1522
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	6 cut(s)	217, 277, 364, 816, 1207, 1291
LmnI	GCTCC	4 cut(s)	109, 421, 1069, 1388
Lsp1109I	GCAGC	5 cut(s)	145, 213, 421, 1006, 1454
LweI	GCATC	6 cut(s)	112, 340, 361, 531, 721, 1493
MaeI	CTAG	3 cut(s)	222, 1497, 1525
MaeII	ACGT	1 cut(s)	592
MaeIII	GTNAC	2 cut(s)	7, 23
MalI	GATC	6 cut(s)	219, 279, 366, 818, 1209, 1293
MboI	GATC	6 cut(s)	217, 277, 364, 816, 1207, 1291
MflI	RGATCY	1 cut(s)	364
MlsI	TGGCCA	1 cut(s)	1412
MluCI	AATT	8 cut(s)	63, 303, 600, 644, 1041, 1283, 1299, 1449
MluNI	TGGCCA	1 cut(s)	1412
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	1 cut(s)	1091
Mox20I	TGGCCA	1 cut(s)	1412
MroXI	GAANNNNTTC	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	1412
MseI	TTAA	4 cut(s)	81, 399, 768, 1452
MslI	CAYNNNNRTG	1 cut(s)	984
Msp20I	TGGCCA	1 cut(s)	1412
MspI	CCGG	1 cut(s)	1491
MspR9I	CCNGG	3 cut(s)	96, 331, 814
Mva1269I	GAATGC	1 cut(s)	1255
MvaI	CCWGG	3 cut(s)	96, 331, 814
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	4 cut(s)	740, 797, 1120, 1238
NdeII	GATC	6 cut(s)	217, 277, 364, 816, 1207, 1291
NlaIII	CATG	5 cut(s)	530, 967, 1019, 1114, 1511
NlaIV	GGNNCC	2 cut(s)	366, 1154
NmuCI	GTSAC	2 cut(s)	7, 23
NruI	TCGCGA	1 cut(s)	261
NspI	RCATGY	1 cut(s)	1511
OliI	CACNNNNGTG	1 cut(s)	984
PaeI	GCATGC	1 cut(s)	1511
PaeR7I	CTCGAG	1 cut(s)	167
PaqCI	CACCTGC	1 cut(s)	5
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PctI	GAATGC	1 cut(s)	1255
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	494, 922
PflMI	CCANNNNNTGG	1 cut(s)	1337
PkrI	GCNGC	6 cut(s)	157, 160, 228, 436, 1021, 1469
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
Psp6I	CCWGG	3 cut(s)	94, 329, 812
PspGI	CCWGG	3 cut(s)	94, 329, 812
PspN4I	GGNNCC	2 cut(s)	366, 1154
PspPI	GGNCC	2 cut(s)	1152, 1197
PstI	CTGCAG	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	364
RruI	TCGCGA	1 cut(s)	261
RsaI	GTAC	1 cut(s)	974
RsaNI	GTAC	1 cut(s)	973
RseI	CAYNNNNRTG	1 cut(s)	984
SaqAI	TTAA	4 cut(s)	81, 399, 768, 1452
SatI	GCNGC	6 cut(s)	156, 159, 227, 435, 1020, 1468
Sau3AI	GATC	6 cut(s)	217, 277, 364, 816, 1207, 1291
Sau96I	GGNCC	2 cut(s)	1152, 1197
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	3 cut(s)	96, 331, 814
SfaNI	GCATC	6 cut(s)	112, 340, 361, 531, 721, 1493
SfcI	CTRYAG	2 cut(s)	12, 1257
Sfr274I	CTCGAG	1 cut(s)	167
SinI	GGWCC	2 cut(s)	1152, 1197
SlaI	CTCGAG	1 cut(s)	167
SmiMI	CAYNNNNRTG	1 cut(s)	984
SmlI	CTYRAG	3 cut(s)	167, 545, 1400
SmoI	CTYRAG	3 cut(s)	167, 545, 1400
SphI	GCATGC	1 cut(s)	1511
Sse9I	AATT	8 cut(s)	63, 303, 600, 644, 1041, 1283, 1299, 1449
SsiI	CCGC	2 cut(s)	155, 292
SspMI	CTAG	3 cut(s)	222, 1497, 1525
StyD4I	CCNGG	3 cut(s)	94, 329, 812
StyI	CCWWGG	2 cut(s)	221, 564
TaaI	ACNGT	2 cut(s)	31, 1027
TaiI	ACGT	1 cut(s)	595
TaqI	TCGA	2 cut(s)	168, 1132
TaqII	GACCGA	1 cut(s)	1118
TasI	AATT	8 cut(s)	63, 303, 600, 644, 1041, 1283, 1299, 1449
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	2 cut(s)	494, 922
Tru1I	TTAA	4 cut(s)	81, 399, 768, 1452
Tru9I	TTAA	4 cut(s)	81, 399, 768, 1452
TscAI	CASTG	2 cut(s)	34, 1524
TseFI	GTSAC	2 cut(s)	7, 23
TseI	GCWGC	5 cut(s)	158, 226, 434, 1019, 1467
Tsp45I	GTSAC	2 cut(s)	7, 23
TspDTI	ATGAA	6 cut(s)	717, 777, 801, 952, 1262, 1362
TspGWI	ACGGA	1 cut(s)	1182
TspRI	CASTG	2 cut(s)	34, 1524
Van91I	CCANNNNNTGG	1 cut(s)	1337
VpaK11BI	GGWCC	2 cut(s)	1152, 1197
XapI	RAATTY	2 cut(s)	1041, 1299
XceI	RCATGY	1 cut(s)	1511
XcmI	CCANNNNNNNNNTGG	2 cut(s)	951, 1382
XhoI	CTCGAG	1 cut(s)	167
XmaJI	CCTAGG	1 cut(s)	221
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	3 cut(s)	222, 1497, 1525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.