AT5G17900

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002954
Physical Location & Seq
Forward (+)
5924372 .. 5927041
2670 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17900.1

Sequence Viewer

Length: 1308 bp
ATGTCGGTCACAGCGGGAGTGAGTGAATCTGCAATTGCTGTAAGGGAGAAACTAAAAGGTGGTATTGGACAGACTAAAGTGCGAAGGTATTGGCCAGGAAAAGCTCCGGAGTGGGCTGAGGAAGCTGAAGAAGATGATGATGTTAGGATGCAGAAGGTTTCTGTTTTGGATAGAGCTTTTCCAAAGAATGATGATTTGGGTGTTGCTAGGAAGGATGATCCAAGGCTGCGCCGTTTAGCTAAGACTAAAGTTGAAAACCGTGACGAAGTTAGAGCTGATCATCGGCGGATAAGACAGGCTGAGATTATTTATACGGAAGAAGAAGAATCGAGGAATCAAGAGAATAGAGACGAGGACGATGATGAAGATGCCTTGGAAGAGAGAAGAAGAAGAATTAGAGAGAAAAATCTTAGAAGAGCGCAAGAGGAGGCTGCTTTACTTCCTTTAGAAGAAGAAGATGAGATACAAGAGGAAGAAGAGGAGGAGGAGGAGTCTGAGTACGAGACTGATTCGGAAGATGATATGCCTGGTATTGCCATGATTAAGCCTGTTTTTGTACCGAAAGCTGAGAGAGATACAATTGCAGAGCGAGAGAGGCTTGAGGCTGAAGAAGAAGCTCTTGAAGAATTAGCAAAGAGAAAATTGGAGCAAAGAAAATTAGAGACAAAGCAAATAGTGGTTGAGGAAGTTAGGAAAGATGAAGAGATACGGAAGAACATTCTATTGGAGGAAGCAAATATTGGAGATGTGGAAACTGATGATGAACTCAATGAAGCTGAGGAGTATGAAGTTTGGAAGACAAGAGAGATTGGTAGGATCAAGAGAGAAAGAGATGCAAGGGAAGCTATGCTGAGAGAGAGGGAAGAAATAGAGAAGTTGAGGAATATGACAGAGCAGGAGAGGAGAGATTGGGAGAGGAAGAATCCGAAACCTTTGTCAGCTCAACCGAAAAAGAAATGGAACTTTATGCAGAAATATTACCACAAGGGTGCCTTCTTCCAGGCAGATCCTGATGATGAGGCAGGTTCTGCTGGAACCGATGGTATATTTCAGCGCGACTTCTCTGCTCCAACTGGAGAAGATAGGTTGGACAAATCGATTCTCCCCAAAGTTATGCAAGTCAAGCACTTTGGTCGTAGTGGAAGAACTAAATGGACTCACCTTGTCAATGAGGACACAACAGATTGGAGTAACCCGTGGACTTCCAATGATCCTCTACGTGAAAAATACAACAAGAAAATGGCAGGCATGGATGCTCCTATCGCAAAACCAAAAGGGAGCAAGAAGATGAAAGATTGGGAGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFAP1

Protein Analysis

435

Amino Acids

51.26

Weight (kDa)

4.92

Isoelectric Point (pI)

60.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFAP1 PF06991 170 - 393 9.8e-76 Microfibril-associated/Pre-mRNA processing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1013
AccB1I GGYRCC 1 cut(s) 989
AccII CGCG 1 cut(s) 1056
AccIII TCCGGA 1 cut(s) 106
AciI CCGC 2 cut(s) 14, 286
AclWI GGATC 4 cut(s) 212, 824, 1001, 1205
AcoI YGGCCR 1 cut(s) 92
AcuI CTGAAG 2 cut(s) 147, 627
AfaI GTAC 2 cut(s) 500, 558
AgsI TTSAA 2 cut(s) 254, 623
AjnI CCWGG 3 cut(s) 94, 526, 999
AjuI GAANNNNNNNTTGG 6 cut(s) 179, 211, 707, 723, 739, 755
AleI CACNNNNGTG 1 cut(s) 987
Alw26I GTCTC 3 cut(s) 342, 497, 656
AlwI GGATC 4 cut(s) 212, 824, 1001, 1205
AlwNI CAGNNNCTG 2 cut(s) 1010, 1028
Aor13HI TCCGGA 1 cut(s) 106
AoxI GGCC 1 cut(s) 92
ApeKI GCWGC 2 cut(s) 226, 431
ArsI GACNNNNNNTTYG 2 cut(s) 920, 952
AspLEI GCGC 3 cut(s) 231, 421, 1056
AsuHPI GGTGA 1 cut(s) 1151
BalI TGGCCA 1 cut(s) 94
BanI GGYRCC 1 cut(s) 989
BarI GAAGNNNNNNTAC 2 cut(s) 447, 479
BbsI GAAGAC 1 cut(s) 803
BbvCI CCTCAGC 2 cut(s) 117, 777
BbvI GCAGC 2 cut(s) 213, 418
BccI CCATC 1 cut(s) 1034
BceAI ACGGC 1 cut(s) 216
BcgI CGANNNNNNTGC 4 cut(s) 1046, 1080, 1115, 1149
BciT130I CCWGG 3 cut(s) 96, 528, 1001
BclI TGATCA 1 cut(s) 277
BcoDI GTCTC 3 cut(s) 342, 497, 656
BfaI CTAG 1 cut(s) 207
BfuAI ACCTGC 1 cut(s) 1013
BisI GCNGC 2 cut(s) 227, 432
BlsI GCNGC 2 cut(s) 228, 433
Bme1390I CCNGG 3 cut(s) 96, 528, 1001
BmiI GGNNCC 2 cut(s) 991, 1036
BmrFI CCNGG 3 cut(s) 96, 528, 1001
BmsI GCATC 4 cut(s) 138, 358, 823, 1243
BpiI GAAGAC 1 cut(s) 803
BpmI CTGGAG 1 cut(s) 1095
Bpu10I CCTNAGC 2 cut(s) 117, 777
BpuEI CTTGAG 1 cut(s) 620
Bsa29I ATCGAT 1 cut(s) 1097
BsaAI YACGTR 1 cut(s) 1220
BsaJI CCNNGG 3 cut(s) 221, 372, 1196
BsaWI WCCGGW 1 cut(s) 106
BsaXI ACNNNNNCTCC 4 cut(s) 476, 482, 506, 512
Bse1I ACTGG 1 cut(s) 1078
BseAI TCCGGA 1 cut(s) 106
BseBI CCWGG 3 cut(s) 96, 528, 1001
BseCI ATCGAT 1 cut(s) 1097
BseDI CCNNGG 3 cut(s) 221, 372, 1196
BseGI GGATG 3 cut(s) 153, 220, 1258
BseMII CTCAG 6 cut(s) 108, 291, 486, 558, 768, 842
BseNI ACTGG 1 cut(s) 1078
BseRI GAGGAG 7 cut(s) 440, 494, 497, 500, 503, 794, 916
BseXI GCAGC 2 cut(s) 213, 418
Bsh1236I CGCG 1 cut(s) 1056
BshFI GGCC 1 cut(s) 94
BshNI GGYRCC 1 cut(s) 989
BshVI ATCGAT 1 cut(s) 1097
BsiSI CCGG 1 cut(s) 107
BsmAI GTCTC 3 cut(s) 342, 497, 656
BsmBI CGTCTC 1 cut(s) 342
BsnI GGCC 1 cut(s) 94
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 5 cut(s) 217, 277, 816, 1006, 1210
BspACI CCGC 2 cut(s) 14, 286
BspANI GGCC 1 cut(s) 94
BspCNI CTCAG 6 cut(s) 109, 292, 487, 559, 769, 843
BspDI ATCGAT 1 cut(s) 1097
BspEI TCCGGA 1 cut(s) 106
BspFNI CGCG 1 cut(s) 1056
BspLI GGNNCC 2 cut(s) 991, 1036
BspMI ACCTGC 1 cut(s) 1013
BspPI GGATC 4 cut(s) 212, 824, 1001, 1205
BspQI GCTCTTC 1 cut(s) 409
BspT107I GGYRCC 1 cut(s) 989
BsrI ACTGG 1 cut(s) 1078
BssECI CCNNGG 3 cut(s) 221, 372, 1196
BssMI GATC 5 cut(s) 217, 277, 816, 1006, 1210
BssT1I CCWWGG 2 cut(s) 221, 372
Bst2UI CCWGG 3 cut(s) 96, 528, 1001
Bst4CI ACNGT 1 cut(s) 260
Bst6I CTCTTC 4 cut(s) 372, 409, 471, 696
BstAPI GCANNNNNTGC 1 cut(s) 1028
BstBAI YACGTR 1 cut(s) 1220
BstC8I GCNNGC 1 cut(s) 1246
BstDEI CTNAG 8 cut(s) 117, 240, 300, 410, 495, 567, 777, 851
BstDSI CCRYGG 1 cut(s) 1196
BstF5I GGATG 3 cut(s) 153, 220, 1258
BstFNI CGCG 1 cut(s) 1056
BstHHI GCGC 3 cut(s) 231, 421, 1056
BstKTI GATC 5 cut(s) 220, 280, 819, 1009, 1213
BstMAI GTCTC 3 cut(s) 342, 497, 656
BstMBI GATC 5 cut(s) 217, 277, 816, 1006, 1210
BstMWI GCNNNNNNNGC 6 cut(s) 122, 595, 842, 1028, 1123, 1262
BstNI CCWGG 3 cut(s) 96, 528, 1001
BstSCI CCNGG 3 cut(s) 94, 526, 999
BstUI CGCG 1 cut(s) 1056
BstV1I GCAGC 2 cut(s) 213, 418
BstV2I GAAGAC 1 cut(s) 803
BstX2I RGATCY 1 cut(s) 1006
BstYI RGATCY 1 cut(s) 1006
Bsu15I ATCGAT 1 cut(s) 1097
BsuRI GGCC 1 cut(s) 94
BsuTUI ATCGAT 1 cut(s) 1097
BtgI CCRYGG 1 cut(s) 1196
BtsCI GGATG 3 cut(s) 153, 220, 1258
BveI ACCTGC 1 cut(s) 1013
Cac8I GCNNGC 1 cut(s) 1246
CaiI CAGNNNCTG 2 cut(s) 1010, 1028
CfoI GCGC 3 cut(s) 231, 421, 1056
ClaI ATCGAT 1 cut(s) 1097
Csp6I GTAC 2 cut(s) 499, 557
CviAII CATG 2 cut(s) 538, 1249
CviQI GTAC 2 cut(s) 499, 557
DdeI CTNAG 8 cut(s) 117, 240, 300, 410, 495, 567, 777, 851
DpnI GATC 5 cut(s) 219, 279, 818, 1008, 1212
DpnII GATC 5 cut(s) 217, 277, 816, 1006, 1210
EaeI YGGCCR 1 cut(s) 92
Eam1104I CTCTTC 4 cut(s) 372, 409, 471, 696
EarI CTCTTC 4 cut(s) 372, 409, 471, 696
EciI GGCGGA 1 cut(s) 301
Eco130I CCWWGG 2 cut(s) 221, 372
Eco57I CTGAAG 2 cut(s) 147, 627
EcoRII CCWGG 3 cut(s) 94, 526, 999
EcoT14I CCWWGG 2 cut(s) 221, 372
ErhI CCWWGG 2 cut(s) 221, 372
Esp3I CGTCTC 1 cut(s) 342
FaeI CATG 2 cut(s) 541, 1252
FalI AAGNNNNNCTT 4 cut(s) 603, 635, 977, 1009
FatI CATG 2 cut(s) 537, 1248
FauI CCCGC 1 cut(s) 7
FbaI TGATCA 1 cut(s) 277
Fnu4HI GCNGC 2 cut(s) 227, 432
FokI GGATG 3 cut(s) 160, 227, 1265
Fsp4HI GCNGC 2 cut(s) 227, 432
FspBI CTAG 1 cut(s) 207
GlaI GCGC 3 cut(s) 230, 420, 1055
GluI GCNGC 2 cut(s) 227, 432
GsuI CTGGAG 1 cut(s) 1095
HaeIII GGCC 1 cut(s) 94
HapII CCGG 1 cut(s) 107
HhaI GCGC 3 cut(s) 231, 421, 1056
Hin1II CATG 2 cut(s) 541, 1252
Hin6I GCGC 3 cut(s) 229, 419, 1054
HinP1I GCGC 3 cut(s) 229, 419, 1054
HinfI GANTC 9 cut(s) 26, 326, 334, 491, 509, 922, 1099, 1156, 1301
HpaII CCGG 1 cut(s) 107
HphI GGTGA 1 cut(s) 1151
Hpy166II GTNNAC 1 cut(s) 1200
Hpy188I TCNGA 3 cut(s) 496, 514, 927
Hpy188III TCNNGA 5 cut(s) 107, 338, 620, 820, 1010
Hpy8I GTNNAC 1 cut(s) 1200
HpyAV CCTTC 4 cut(s) 78, 148, 205, 1003
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4IV ACGT 1 cut(s) 1219
HpyCH4V TGCA 6 cut(s) 32, 151, 584, 836, 970, 1117
HpyF10VI GCNNNNNNNGC 6 cut(s) 122, 595, 842, 1028, 1123, 1262
HpyF3I CTNAG 8 cut(s) 117, 240, 300, 410, 495, 567, 777, 851
HpySE526I ACGT 1 cut(s) 1219
Hsp92II CATG 2 cut(s) 541, 1252
HspAI GCGC 3 cut(s) 229, 419, 1054
Kpn2I TCCGGA 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 277
Kzo9I GATC 5 cut(s) 217, 277, 816, 1006, 1210
LguI GCTCTTC 1 cut(s) 409
LmnI GCTCC 5 cut(s) 109, 646, 1072, 1261, 1278
Lsp1109I GCAGC 2 cut(s) 213, 418
LweI GCATC 4 cut(s) 138, 358, 823, 1243
MaeI CTAG 1 cut(s) 207
MaeII ACGT 1 cut(s) 1219
MaeIII GTNAC 3 cut(s) 7, 260, 1190
MalI GATC 5 cut(s) 219, 279, 818, 1008, 1212
MboI GATC 5 cut(s) 217, 277, 816, 1006, 1210
MfeI CAATTG 2 cut(s) 33, 579
MflI RGATCY 1 cut(s) 1006
MlsI TGGCCA 1 cut(s) 94
MluCI AATT 6 cut(s) 33, 393, 579, 626, 641, 656
MluNI TGGCCA 1 cut(s) 94
MlyI GAGTC 2 cut(s) 500, 1150
MmeI TCCRAC 2 cut(s) 1068, 1094
Mox20I TGGCCA 1 cut(s) 94
MroI TCCGGA 1 cut(s) 106
MscI TGGCCA 1 cut(s) 94
MseI TTAA 2 cut(s) 543, 1306
MslI CAYNNNNRTG 1 cut(s) 987
Msp20I TGGCCA 1 cut(s) 94
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 3 cut(s) 96, 528, 1001
MunI CAATTG 2 cut(s) 33, 579
MvaI CCWGG 3 cut(s) 96, 528, 1001
MvnI CGCG 1 cut(s) 1056
MwoI GCNNNNNNNGC 6 cut(s) 122, 595, 842, 1028, 1123, 1262
NdeII GATC 5 cut(s) 217, 277, 816, 1006, 1210
NlaIII CATG 2 cut(s) 541, 1252
NlaIV GGNNCC 2 cut(s) 991, 1036
NmuCI GTSAC 2 cut(s) 7, 260
OliI CACNNNNGTG 1 cut(s) 987
PciSI GCTCTTC 1 cut(s) 409
PfeI GAWTC 6 cut(s) 26, 326, 334, 509, 922, 1099
PkrI GCNGC 2 cut(s) 228, 433
PleI GAGTC 2 cut(s) 499, 1150
PpsI GAGTC 2 cut(s) 499, 1150
Ppu21I YACGTR 1 cut(s) 1220
Psp6I CCWGG 3 cut(s) 94, 526, 999
PspGI CCWGG 3 cut(s) 94, 526, 999
PspN4I GGNNCC 2 cut(s) 991, 1036
PstNI CAGNNNCTG 2 cut(s) 1010, 1028
PsuI RGATCY 1 cut(s) 1006
RsaI GTAC 2 cut(s) 500, 558
RsaNI GTAC 2 cut(s) 499, 557
RseI CAYNNNNRTG 1 cut(s) 987
SapI GCTCTTC 1 cut(s) 409
SaqAI TTAA 2 cut(s) 543, 1306
SatI GCNGC 2 cut(s) 227, 432
Sau3AI GATC 5 cut(s) 217, 277, 816, 1006, 1210
SchI GAGTC 2 cut(s) 500, 1150
ScrFI CCNGG 3 cut(s) 96, 528, 1001
SfaNI GCATC 4 cut(s) 138, 358, 823, 1243
SmiMI CAYNNNNRTG 1 cut(s) 987
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
Sse9I AATT 6 cut(s) 33, 393, 579, 626, 641, 656
SsiI CCGC 2 cut(s) 14, 286
SspI AATATT 2 cut(s) 739, 977
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 3 cut(s) 94, 526, 999
StyI CCWWGG 2 cut(s) 221, 372
TaaI ACNGT 1 cut(s) 260
TaiI ACGT 1 cut(s) 1222
TaqI TCGA 2 cut(s) 329, 1097
TasI AATT 6 cut(s) 33, 393, 579, 626, 641, 656
TfiI GAWTC 6 cut(s) 26, 326, 334, 509, 922, 1099
Tru1I TTAA 2 cut(s) 543, 1306
Tru9I TTAA 2 cut(s) 543, 1306
TseFI GTSAC 2 cut(s) 7, 260
TseI GCWGC 2 cut(s) 226, 431
Tsp45I GTSAC 2 cut(s) 7, 260
TspDTI ATGAA 6 cut(s) 378, 714, 777, 786, 801, 1304
TspGWI ACGGA 2 cut(s) 329, 724
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.