Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002954

Physical Location & Seq

Genomic Coordinates Reverse (-)

14406483 .. 14411497

Gene Structure 5015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G226700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGTCGGTAACAGCAGGTGTTAGTGATACTGTGATTGCAGTCAGGGATAAGCTCAGAGGTAAAATTGGGCAAACAAAAGTTAAAAGGTATTGGCCTGGAAAAGCTCCCGAGTGGGCAGATGATGCCGACGAAGATGGGGATATTAGGATGTCTGCAGCTGCTTCATTGGAGAAAGCTTTCCCCACGCAGGAATATTCTGATGTTGTTAGAAAAGATGATCCTAGACTGCGCCGTTTGGCTGAGAGCAGGATAGATAATCGTGAGGATGTTCGAGCTGATCATAGGCGTATCCGGCAAGCTGAGATTGTTTCAACAATTGAAGAAGAAGCCAAGAGGCAGGAAGGATTAGAAGCGGAGGAAGAGGACGCGGATGCTTTGGAGGAAAGAAGAAGAAGGATCAAGGAGAAGTTGCGTCAAAGGGAGCAAGAAGAAGCTCCACTCCTTCTGTCAGAAGACGAGGAAGAAGTAAAGGAAGAGGAGGAAGAGGAGTCTGAGTATGATACTGACTCAGAAGAAGAGCTTACTGGTATGGTGATGTTGAAGCCTGTCTTTGTGCCCAAGTCAGAGAGAGATACTATTGCTGAACGTGAGCGACTTGAGGCTGAAGAACGAGCCCTTGAGGAATCAAGGAAGAGGAATTTGGAGGAAAGGAAGAGAGAGACAAAGCAGATTGTGGTTGAGGAGATTCGGAAGGACGAAGAGATTCAGAAGGGTTTGGAACAGGAAGGAAATATTGTTGATATTGATACTGATGATGAAATAAACGAGGCAGAGGAGTATGAAGCTTGGAAGGCAAGAGAGATAGCCAGGATCAAGAGGGATAGGGAGGACCGGGAAGCAATGATTAAGGAGAAGGAAGAGATTGAAAGGGTTAGAAACATGACAGAGGAAGAGAGGAGGGACTGGGAGAGGAAGCATCCGAAAGCTGCACCACAACCAAAGCAGAAGTGGAGATTTATGCAGAAATATTACCACAAGGGTGCTTTCTTCCAGTCAGAACCTGATGACTATGCTGCAACTGTTGGAACAGATGGAATTTACACACGTGATTTCTCTGCCCCAACTGGAGAAGATAAGATGGACAAAACAATATTGCCCAAGGTCATGCAAGTCAAACATTTTGGTCGTAGTGGAAGGACGAAATGGACTCATCTTGTCAATGAGGATACGACTGATTGGAACAATCCATGGACATACAATGATCCTCTTCGGTCAAAGTATAATGCTAAAATGGCAGGAATGAACGCGCCTATTGCAAAACCCAAAGGAAGCAAGAAATTGAAGGATTGGGAATCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFAP1

Protein Analysis

434

Amino Acids

51.03

Weight (kDa)

5.03

Isoelectric Point (pI)

63.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08580 AT4G08580 AT5G17900
fragaria_vesca	FvH4_5g26300
malus_domestica	MD01G1001200.v1.1 MD15G1341800.v1.1
prunus_persica	Prupe.4G226700_v2.0.a1 Prupe.6G162200_v2.0.a1 Prupe.6G162200_v2.0.a1 Prupe.6G162200_v2.0.a1
pyrus_communis	pycom15g30230
rosa_chinensis	RchiOBHm_Chr2g0119581 RchiOBHm_Chr7g0222731
rosa_laevigata	RLG00000002028 RLG00000018143 RLG00000018473 RLG00000018476
rosa_multiflora	Rmu_co8450215.1_g000001 Rmu_sc0002868.1_g000058 Rmu_sc0007870.1_g000005 Rmu_sc0025009.1_g000003 Rmu_sc0038141.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124260 Rroxscaffold_3G00236520
rosa_rugosa	Rorug02G0222100 Rorug02G0222200 Rorug07G0212100 Rorug07G0212100
rosa_samantha	Rh2AG279700 Rh2BG291400 Rh2DG286400 Rh2DG305600 Rh7AG356300 Rh7BG344700 Rh7CG373800 Rh7DG350600
rosa_wichuraiana	Rw2G022340 Rw7G030230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	5
Acc36I	ACCTGC	1 cut(s)	5
AccII	CGCG	2 cut(s)	368, 1247
AciI	CCGC	2 cut(s)	353, 368
AclWI	GGATC	4 cut(s)	212, 404, 818, 1196
AcsI	RAATTY	2 cut(s)	637, 1035
AcuI	CTGAAG	1 cut(s)	624
AcvI	CACGTG	1 cut(s)	1046
AfiI	CCNNNNNNNGG	1 cut(s)	187
AflIII	ACRYGT	1 cut(s)	1043
AgsI	TTSAA	5 cut(s)	312, 320, 541, 866, 1282
AjnI	CCWGG	2 cut(s)	94, 806
AjuI	GAANNNNNNNTTGG	2 cut(s)	623, 655
AleI	CACNNNNGTG	1 cut(s)	978
Alw26I	GTCTC	1 cut(s)	653
AlwI	GGATC	4 cut(s)	212, 404, 818, 1196
AlwNI	CAGNNNCTG	1 cut(s)	1001
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	1 cut(s)	92
ApeKI	GCWGC	4 cut(s)	155, 158, 926, 1013
ApoI	RAATTY	2 cut(s)	637, 1035
Asp700I	GAANNNNTTC	2 cut(s)	176, 702
AspLEI	GCGC	2 cut(s)	231, 1249
AspS9I	GGNCC	1 cut(s)	829
AsuC2I	CCSGG	1 cut(s)	833
AsuHPI	GGTGA	1 cut(s)	544
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	829
BaeGI	GKGCMC	1 cut(s)	558
BanII	GRGCYC	1 cut(s)	616
BbrPI	CACGTG	1 cut(s)	1046
BbsI	GAAGAC	1 cut(s)	459
BbvI	GCAGC	4 cut(s)	145, 167, 913, 1000
BccI	CCATC	3 cut(s)	128, 1025, 1072
BceAI	ACGGC	1 cut(s)	216
BciT130I	CCWGG	2 cut(s)	96, 808
BciVI	GTATCC	2 cut(s)	299, 1159
BclI	TGATCA	1 cut(s)	277
BcnI	CCSGG	1 cut(s)	833
BcoDI	GTCTC	1 cut(s)	653
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	153
BfuAI	ACCTGC	1 cut(s)	5
BfuI	GTATCC	2 cut(s)	299, 1159
BisI	GCNGC	4 cut(s)	156, 159, 927, 1014
BlsI	GCNGC	4 cut(s)	157, 160, 928, 1015
Bme1390I	CCNGG	3 cut(s)	96, 808, 833
Bme18I	GGWCC	1 cut(s)	829
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	829
BmrFI	CCNGG	3 cut(s)	96, 808, 833
BmrI	ACTGGG	1 cut(s)	913
BmsI	GCATC	3 cut(s)	112, 361, 925
BmuI	ACTGGG	1 cut(s)	913
BpiI	GAAGAC	1 cut(s)	459
BpmI	CTGGAG	1 cut(s)	1086
BpuEI	CTTGAG	2 cut(s)	617, 638
BpuMI	CCSGG	1 cut(s)	833
BsaAI	YACGTR	1 cut(s)	1046
BsaJI	CCNNGG	2 cut(s)	1098, 1187
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	4 cut(s)	529, 908, 991, 1069
Bse3DI	GCAATG	1 cut(s)	846
BseBI	CCWGG	2 cut(s)	96, 808
BseDI	CCNNGG	2 cut(s)	1098, 1187
BseGI	GGATG	4 cut(s)	153, 271, 376, 916
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMI	GCAATG	1 cut(s)	846
BseMII	CTCAG	5 cut(s)	67, 231, 291, 483, 522
BseNI	ACTGG	4 cut(s)	529, 908, 991, 1069
BseRI	GAGGAG	5 cut(s)	491, 500, 695, 788, 910
BseSI	GKGCMC	1 cut(s)	558
BseXI	GCAGC	4 cut(s)	145, 167, 913, 1000
BsgI	GTGCAG	1 cut(s)	912
Bsh1236I	CGCG	2 cut(s)	368, 1247
BshFI	GGCC	1 cut(s)	94
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	2 cut(s)	292, 832
BslFI	GGGAC	1 cut(s)	914
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmAI	GTCTC	1 cut(s)	653
BsmFI	GGGAC	1 cut(s)	914
BsnI	GGCC	1 cut(s)	94
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	2 cut(s)	558, 616
Bsp143I	GATC	5 cut(s)	217, 277, 396, 810, 1201
Bsp19I	CCATGG	1 cut(s)	1187
BspACI	CCGC	2 cut(s)	353, 368
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	5 cut(s)	66, 232, 292, 484, 521
BspFNI	CGCG	2 cut(s)	368, 1247
BspMAI	CTGCAG	1 cut(s)	157
BspMI	ACCTGC	1 cut(s)	5
BspPI	GGATC	4 cut(s)	212, 404, 818, 1196
BspQI	GCTCTTC	1 cut(s)	510
BsrDI	GCAATG	1 cut(s)	846
BsrI	ACTGG	4 cut(s)	529, 908, 991, 1069
BssECI	CCNNGG	2 cut(s)	1098, 1187
BssMI	GATC	5 cut(s)	217, 277, 396, 810, 1201
BssT1I	CCWWGG	2 cut(s)	1098, 1187
Bst2UI	CCWGG	2 cut(s)	96, 808
Bst4CI	ACNGT	2 cut(s)	31, 1021
BstAPI	GCANNNNNTGC	1 cut(s)	122
BstBAI	YACGTR	1 cut(s)	1046
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	5 cut(s)	53, 240, 300, 492, 508
BstDSI	CCRYGG	1 cut(s)	1187
BstF5I	GGATG	4 cut(s)	153, 271, 376, 916
BstFNI	CGCG	2 cut(s)	368, 1247
BstHHI	GCGC	2 cut(s)	231, 1249
BstKTI	GATC	5 cut(s)	220, 280, 399, 813, 1204
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	5 cut(s)	217, 277, 396, 810, 1201
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 292, 791, 1232, 1253
BstNI	CCWGG	2 cut(s)	96, 808
BstSCI	CCNGG	3 cut(s)	94, 806, 831
BstSFI	CTRYAG	1 cut(s)	153
BstSLI	GKGCMC	1 cut(s)	558
BstUI	CGCG	2 cut(s)	368, 1247
BstV1I	GCAGC	4 cut(s)	145, 167, 913, 1000
BstV2I	GAAGAC	1 cut(s)	459
BsuI	GTATCC	2 cut(s)	299, 1159
BsuRI	GGCC	1 cut(s)	94
BtgI	CCRYGG	1 cut(s)	1187
BtsCI	GGATG	4 cut(s)	153, 271, 376, 916
BveI	ACCTGC	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	297
CaiI	CAGNNNCTG	1 cut(s)	1001
CfoI	GCGC	2 cut(s)	231, 1249
Cfr13I	GGNCC	1 cut(s)	829
CseI	GACGC	2 cut(s)	374, 401
CviAII	CATG	3 cut(s)	880, 1105, 1188
DdeI	CTNAG	5 cut(s)	53, 240, 300, 492, 508
DpnI	GATC	5 cut(s)	219, 279, 398, 812, 1203
DpnII	GATC	5 cut(s)	217, 277, 396, 810, 1201
Eco130I	CCWWGG	2 cut(s)	1098, 1187
Eco24I	GRGCYC	1 cut(s)	616
Eco47I	GGWCC	1 cut(s)	829
Eco57I	CTGAAG	1 cut(s)	624
Eco72I	CACGTG	1 cut(s)	1046
Eco88I	CYCGRG	1 cut(s)	107
EcoRII	CCWGG	2 cut(s)	94, 806
EcoT14I	CCWWGG	2 cut(s)	1098, 1187
EcoT38I	GRGCYC	1 cut(s)	616
ErhI	CCWWGG	2 cut(s)	1098, 1187
FaeI	CATG	3 cut(s)	883, 1108, 1191
FalI	AAGNNNNNCTT	4 cut(s)	504, 536, 533, 565
FaqI	GGGAC	1 cut(s)	914
FatI	CATG	3 cut(s)	879, 1104, 1187
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	4 cut(s)	156, 159, 927, 1014
FokI	GGATG	4 cut(s)	160, 278, 383, 903
FriOI	GRGCYC	1 cut(s)	616
Fsp4HI	GCNGC	4 cut(s)	156, 159, 927, 1014
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	2 cut(s)	230, 1248
GluI	GCNGC	4 cut(s)	156, 159, 927, 1014
GsuI	CTGGAG	1 cut(s)	1086
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	2 cut(s)	292, 832
HgaI	GACGC	2 cut(s)	374, 401
HhaI	GCGC	2 cut(s)	231, 1249
Hin1II	CATG	3 cut(s)	883, 1108, 1191
Hin6I	GCGC	2 cut(s)	229, 1247
HinP1I	GCGC	2 cut(s)	229, 1247
HindIII	AAGCTT	2 cut(s)	174, 783
HinfI	GANTC	7 cut(s)	488, 506, 623, 685, 703, 1147, 1292
HpaII	CCGG	2 cut(s)	292, 832
HphI	GGTGA	1 cut(s)	544
Hpy188III	TCNNGA	3 cut(s)	107, 260, 814
Hpy99I	CGWCG	1 cut(s)	131
HpyCH4III	ACNGT	2 cut(s)	31, 1021
HpyCH4IV	ACGT	2 cut(s)	586, 1045
HpyCH4V	TGCA	7 cut(s)	38, 155, 929, 961, 1016, 1108, 1256
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 292, 791, 1232, 1253
HpyF3I	CTNAG	5 cut(s)	53, 240, 300, 492, 508
HpySE526I	ACGT	2 cut(s)	586, 1045
Hsp92II	CATG	3 cut(s)	883, 1108, 1191
HspAI	GCGC	2 cut(s)	229, 1247
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	5 cut(s)	217, 277, 396, 810, 1201
LguI	GCTCTTC	1 cut(s)	510
LmnI	GCTCC	3 cut(s)	109, 421, 439
Lsp1109I	GCAGC	4 cut(s)	145, 167, 913, 1000
LweI	GCATC	3 cut(s)	112, 361, 925
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	2 cut(s)	586, 1045
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	5 cut(s)	219, 279, 398, 812, 1203
MboI	GATC	5 cut(s)	217, 277, 396, 810, 1201
MfeI	CAATTG	1 cut(s)	315
MhlI	GDGCHC	2 cut(s)	558, 616
MluCI	AATT	5 cut(s)	63, 315, 637, 1035, 1277
MlyI	GAGTC	3 cut(s)	497, 500, 1141
MmeI	TCCRAC	1 cut(s)	1003
MroXI	GAANNNNTTC	2 cut(s)	176, 702
MseI	TTAA	2 cut(s)	81, 846
MslI	CAYNNNNRTG	1 cut(s)	978
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	2 cut(s)	292, 832
MspR9I	CCNGG	3 cut(s)	96, 808, 833
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	2 cut(s)	96, 808
MvnI	CGCG	2 cut(s)	368, 1247
MwoI	GCNNNNNNNGC	5 cut(s)	122, 292, 791, 1232, 1253
NciI	CCSGG	1 cut(s)	833
NcoI	CCATGG	1 cut(s)	1187
NdeII	GATC	5 cut(s)	217, 277, 396, 810, 1201
NlaIII	CATG	3 cut(s)	883, 1108, 1191
OliI	CACNNNNGTG	1 cut(s)	978
PaqCI	CACCTGC	1 cut(s)	5
PciSI	GCTCTTC	1 cut(s)	510
PdmI	GAANNNNTTC	2 cut(s)	176, 702
PfeI	GAWTC	4 cut(s)	623, 685, 703, 1292
PkrI	GCNGC	4 cut(s)	157, 160, 928, 1015
PleI	GAGTC	3 cut(s)	496, 500, 1141
PmaCI	CACGTG	1 cut(s)	1046
PmlI	CACGTG	1 cut(s)	1046
PpsI	GAGTC	3 cut(s)	496, 500, 1141
Ppu21I	YACGTR	1 cut(s)	1046
Psp6I	CCWGG	2 cut(s)	94, 806
PspCI	CACGTG	1 cut(s)	1046
PspGI	CCWGG	2 cut(s)	94, 806
PspPI	GGNCC	1 cut(s)	829
PstI	CTGCAG	1 cut(s)	157
PstNI	CAGNNNCTG	1 cut(s)	1001
PvuII	CAGCTG	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	978
SapI	GCTCTTC	1 cut(s)	510
SaqAI	TTAA	2 cut(s)	81, 846
SatI	GCNGC	4 cut(s)	156, 159, 927, 1014
Sau3AI	GATC	5 cut(s)	217, 277, 396, 810, 1201
Sau96I	GGNCC	1 cut(s)	829
SchI	GAGTC	3 cut(s)	497, 500, 1141
ScrFI	CCNGG	3 cut(s)	96, 808, 833
SduI	GDGCHC	2 cut(s)	558, 616
SfaNI	GCATC	3 cut(s)	112, 361, 925
SfcI	CTRYAG	1 cut(s)	153
SinI	GGWCC	1 cut(s)	829
SmiMI	CAYNNNNRTG	1 cut(s)	978
SmlI	CTYRAG	2 cut(s)	596, 617
SmoI	CTYRAG	2 cut(s)	596, 617
Sse9I	AATT	5 cut(s)	63, 315, 637, 1035, 1277
SsiI	CCGC	2 cut(s)	353, 368
SspI	AATATT	4 cut(s)	194, 733, 968, 1092
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	3 cut(s)	94, 806, 831
StyI	CCWWGG	2 cut(s)	1098, 1187
TaaI	ACNGT	2 cut(s)	31, 1021
TaiI	ACGT	2 cut(s)	589, 1048
TaqI	TCGA	1 cut(s)	271
TaqII	GACCGA	1 cut(s)	1200
TasI	AATT	5 cut(s)	63, 315, 637, 1035, 1277
TfiI	GAWTC	4 cut(s)	623, 685, 703, 1292
Tru1I	TTAA	2 cut(s)	81, 846
Tru9I	TTAA	2 cut(s)	81, 846
TseI	GCWGC	4 cut(s)	155, 158, 926, 1013
TspDTI	ATGAA	4 cut(s)	153, 771, 795, 1256
VpaK11BI	GGWCC	1 cut(s)	829
XapI	RAATTY	2 cut(s)	637, 1035
XcmI	CCANNNNNNNNNTGG	1 cut(s)	945
XmnI	GAANNNNTTC	2 cut(s)	176, 702
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.