Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8450215.1

Orthogroup ID

OG0002954

Physical Location & Seq

Genomic Coordinates Reverse (-)

452 .. 1648

Gene Structure 1197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8450215.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

atgtcggtgactgcaggtgttagtgacactgtgattgccattagggataagctgagaggtaaaattggacagactaaagttaaaaggtattggcctggaaaagctcctgagtggggagatgatgccgacgaagatggcgatattaggttgtctgcggctgcctccctcgagaaagccttccccactcaggattattccgatattgcaaggaaagatgatcctaggctgcgtcgtttggctgagagcaggatagataatcgcgatgatgttagggctgatcacaggcgtatccgccaagctgaaattgtttcaactattgaagaggaagccaggaggcaggaagggatagatgccgaagaagaggatcctgatgctttagaggaaaggagaagaaggattaaggaaaggttgcgtgagagggagcaagaagaagctgcactcctcccctccgaagatgaggaagaagataaggaagaagaggaggaggaagaggaatcagagtattcaactgactcagaagatgagcatggtggtatgatgatgctcaagccagtctttgttcccaaggctgagagagataccatcgctgaacgtgagcgaattgaggcagaagaactggcctttgaggaagcaaggaagaaaaaattggaggagaggaagagagagacaaagcagattgtggttgaggaaatccgaaaggatgaagagatacagaaaagtatggaacaggatgctaacattgctgatattgatactgatgatgaacttaacgaggcagaggagtatgaagcttggaaggcaagagagattgccaggatcaagagggatagggaggaaagagaggcgatgttgaaggaaaaggaagagattgaaagggtaagaaatatgacagaggaagagaggagggaatgggagaggaagaatcctaaacctgcaccaaaaccaaagcaaaagtggaggttcatgcagaagtaccaccacaaaggtgctttcttccagtcagacgcagatgaccatgctgcaactgtgggaacagatggaatttttactcgtgatttctctgctccaactggagaagataaaatggacaaaactatattgccgaaggtcatgcaagtcaagcatttcggtcgaagtggaaggacaaaatggacccatcttgtcaatgaggatactactgactggaacaatccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFAP1

Protein Analysis

398

Amino Acids

46.87

Weight (kDa)

4.87

Isoelectric Point (pI)

61.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08580 AT4G08580 AT5G17900
fragaria_vesca	FvH4_5g26300
malus_domestica	MD01G1001200.v1.1 MD15G1341800.v1.1
prunus_persica	Prupe.4G226700_v2.0.a1 Prupe.6G162200_v2.0.a1 Prupe.6G162200_v2.0.a1 Prupe.6G162200_v2.0.a1
pyrus_communis	pycom15g30230
rosa_chinensis	RchiOBHm_Chr2g0119581 RchiOBHm_Chr7g0222731
rosa_laevigata	RLG00000002028 RLG00000018143 RLG00000018473 RLG00000018476
rosa_multiflora	Rmu_co8450215.1_g000001 Rmu_sc0002868.1_g000058 Rmu_sc0007870.1_g000005 Rmu_sc0025009.1_g000003 Rmu_sc0038141.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124260 Rroxscaffold_3G00236520
rosa_rugosa	Rorug02G0222100 Rorug02G0222200 Rorug07G0212100 Rorug07G0212100
rosa_samantha	Rh2AG279700 Rh2BG291400 Rh2DG286400 Rh2DG305600 Rh7AG356300 Rh7BG344700 Rh7CG373800 Rh7DG350600
rosa_wichuraiana	Rw2G022340 Rw7G030230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	5
Acc36I	ACCTGC	2 cut(s)	5, 940
AccII	CGCG	1 cut(s)	261
AciI	CCGC	2 cut(s)	155, 292
AclWI	GGATC	4 cut(s)	212, 359, 372, 824
AcsI	RAATTY	1 cut(s)	1041
AfaI	GTAC	1 cut(s)	974
AfiI	CCNNNNNNNGG	2 cut(s)	113, 187
AgsI	TTSAA	5 cut(s)	312, 320, 507, 853, 872
AjnI	CCWGG	3 cut(s)	94, 329, 812
AjuI	GAANNNNNNNTTGG	2 cut(s)	629, 661
AleI	CACNNNNGTG	1 cut(s)	984
AluBI	AGCT	5 cut(s)	52, 104, 299, 434, 791
AluI	AGCT	5 cut(s)	52, 104, 299, 434, 791
Alw26I	GTCTC	1 cut(s)	659
AlwI	GGATC	4 cut(s)	212, 359, 372, 824
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	2 cut(s)	92, 618
ApeKI	GCWGC	4 cut(s)	158, 226, 434, 1019
ApoI	RAATTY	1 cut(s)	1041
Asp700I	GAANNNNTTC	1 cut(s)	176
AspA2I	CCTAGG	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	1152
AsuHPI	GGTGA	1 cut(s)	19
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	1152
AvrII	CCTAGG	1 cut(s)	221
BaeI	ACNNNNGTAYC	2 cut(s)	271, 304
BamHI	GGATCC	1 cut(s)	364
BauI	CACGAG	1 cut(s)	1050
BbvI	GCAGC	4 cut(s)	145, 213, 421, 1006
BccI	CCATC	4 cut(s)	128, 590, 1031, 1164
BcgI	CGANNNNNNTGC	4 cut(s)	1093, 1112, 1127, 1146
BciT130I	CCWGG	3 cut(s)	96, 331, 814
BciVI	GTATCC	2 cut(s)	299, 1165
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	659
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	12
BfuAI	ACCTGC	2 cut(s)	5, 940
BfuI	GTATCC	2 cut(s)	299, 1165
BisI	GCNGC	5 cut(s)	156, 159, 227, 435, 1020
BlnI	CCTAGG	1 cut(s)	221
BlsI	GCNGC	5 cut(s)	157, 160, 228, 436, 1021
Bme1390I	CCNGG	3 cut(s)	96, 331, 814
Bme18I	GGWCC	1 cut(s)	1152
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	1152
BmiI	GGNNCC	2 cut(s)	366, 1154
BmrFI	CCNGG	3 cut(s)	96, 331, 814
BmsI	GCATC	5 cut(s)	112, 340, 361, 531, 721
BpmI	CTGGAG	1 cut(s)	1092
BpuEI	CTTGAG	1 cut(s)	530
BsaJI	CCNNGG	2 cut(s)	221, 564
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 187
Bse1I	ACTGG	5 cut(s)	551, 621, 997, 1075, 1187
Bse3DI	GCAATG	1 cut(s)	738
BseBI	CCWGG	3 cut(s)	96, 331, 814
BseDI	CCNNGG	2 cut(s)	221, 564
BseGI	GGATG	2 cut(s)	706, 736
BseLI	CCNNNNNNNGG	2 cut(s)	113, 187
BseMI	GCAATG	1 cut(s)	738
BseMII	CTCAG	6 cut(s)	44, 99, 200, 231, 528, 561
BseNI	ACTGG	5 cut(s)	551, 621, 997, 1075, 1187
BseRI	GAGGAG	6 cut(s)	431, 494, 497, 665, 794, 916
BseXI	GCAGC	4 cut(s)	145, 213, 421, 1006
BsgI	GTGCAG	2 cut(s)	420, 918
Bsh1236I	CGCG	1 cut(s)	261
Bsh1285I	CGRYCG	1 cut(s)	1132
BshFI	GGCC	2 cut(s)	94, 620
BsiEI	CGRYCG	1 cut(s)	1132
BsiHKCI	CYCGRG	1 cut(s)	167
BslI	CCNNNNNNNGG	2 cut(s)	113, 187
BsmAI	GTCTC	1 cut(s)	659
BsnI	GGCC	2 cut(s)	94, 620
BsoBI	CYCGRG	1 cut(s)	167
Bsp143I	GATC	4 cut(s)	217, 277, 364, 816
Bsp68I	TCGCGA	1 cut(s)	261
BspACI	CCGC	2 cut(s)	155, 292
BspANI	GGCC	2 cut(s)	94, 620
BspCNI	CTCAG	6 cut(s)	45, 100, 199, 232, 527, 562
BspFNI	CGCG	1 cut(s)	261
BspLI	GGNNCC	2 cut(s)	366, 1154
BspMAI	CTGCAG	1 cut(s)	16
BspMI	ACCTGC	2 cut(s)	5, 940
BspPI	GGATC	4 cut(s)	212, 359, 372, 824
BsrDI	GCAATG	1 cut(s)	738
BsrI	ACTGG	5 cut(s)	551, 621, 997, 1075, 1187
BssECI	CCNNGG	2 cut(s)	221, 564
BssMI	GATC	4 cut(s)	217, 277, 364, 816
BssSI	CACGAG	1 cut(s)	1050
BssT1I	CCWWGG	2 cut(s)	221, 564
Bst2BI	CACGAG	1 cut(s)	1050
Bst2UI	CCWGG	3 cut(s)	96, 331, 814
Bst4CI	ACNGT	2 cut(s)	31, 1027
Bst6I	CTCTTC	8 cut(s)	315, 354, 471, 483, 653, 699, 858, 891
BstDEI	CTNAG	6 cut(s)	53, 108, 186, 240, 514, 570
BstF5I	GGATG	2 cut(s)	706, 736
BstFNI	CGCG	1 cut(s)	261
BstKTI	GATC	4 cut(s)	220, 280, 367, 819
BstMAI	GTCTC	1 cut(s)	659
BstMBI	GATC	4 cut(s)	217, 277, 364, 816
BstMCI	CGRYCG	1 cut(s)	1132
BstMWI	GCNNNNNNNGC	3 cut(s)	740, 797, 1120
BstNI	CCWGG	3 cut(s)	96, 331, 814
BstSCI	CCNGG	3 cut(s)	94, 329, 812
BstSFI	CTRYAG	1 cut(s)	12
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	4 cut(s)	145, 213, 421, 1006
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuI	GTATCC	2 cut(s)	299, 1165
BsuRI	GGCC	2 cut(s)	94, 620
BtgZI	GCGATG	3 cut(s)	276, 568, 860
BtsCI	GGATG	2 cut(s)	706, 736
BtsIMutI	CAGTG	1 cut(s)	27
BtuMI	TCGCGA	1 cut(s)	261
BveI	ACCTGC	2 cut(s)	5, 940
Cfr13I	GGNCC	1 cut(s)	1152
CseI	GACGC	2 cut(s)	218, 1013
Csp6I	GTAC	1 cut(s)	973
CviAII	CATG	4 cut(s)	527, 964, 1016, 1111
CviQI	GTAC	1 cut(s)	973
DdeI	CTNAG	6 cut(s)	53, 108, 186, 240, 514, 570
DpnI	GATC	4 cut(s)	219, 279, 366, 818
DpnII	GATC	4 cut(s)	217, 277, 364, 816
Eam1104I	CTCTTC	8 cut(s)	315, 354, 471, 483, 653, 699, 858, 891
EarI	CTCTTC	8 cut(s)	315, 354, 471, 483, 653, 699, 858, 891
EciI	GGCGGA	1 cut(s)	281
Eco130I	CCWWGG	2 cut(s)	221, 564
Eco47I	GGWCC	1 cut(s)	1152
Eco88I	CYCGRG	1 cut(s)	167
EcoRII	CCWGG	3 cut(s)	94, 329, 812
EcoT14I	CCWWGG	2 cut(s)	221, 564
ErhI	CCWWGG	2 cut(s)	221, 564
FaeI	CATG	4 cut(s)	530, 967, 1019, 1114
FaiI	YATR	9 cut(s)	528, 536, 722, 786, 887, 965, 1017, 1097, 1112
FalI	AAGNNNNNCTT	2 cut(s)	539, 571
FatI	CATG	4 cut(s)	526, 963, 1015, 1110
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	5 cut(s)	156, 159, 227, 435, 1020
FokI	GGATG	2 cut(s)	713, 743
Fsp4HI	GCNGC	5 cut(s)	156, 159, 227, 435, 1020
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	5 cut(s)	156, 159, 227, 435, 1020
GsuI	CTGGAG	1 cut(s)	1092
HaeIII	GGCC	2 cut(s)	94, 620
HgaI	GACGC	2 cut(s)	218, 1013
Hin1II	CATG	4 cut(s)	530, 967, 1019, 1114
HindIII	AAGCTT	1 cut(s)	789
HinfI	GANTC	3 cut(s)	494, 512, 922
HphI	GGTGA	1 cut(s)	19
Hpy188I	TCNGA	6 cut(s)	199, 451, 499, 517, 695, 1003
Hpy188III	TCNNGA	7 cut(s)	107, 169, 188, 260, 368, 820, 1052
Hpy99I	CGWCG	2 cut(s)	131, 234
HpyAV	CCTTC	7 cut(s)	187, 335, 387, 790, 847, 1099, 1134
HpyCH4III	ACNGT	2 cut(s)	31, 1027
HpyCH4IV	ACGT	1 cut(s)	592
HpyCH4V	TGCA	7 cut(s)	14, 206, 437, 935, 967, 1022, 1114
HpyF10VI	GCNNNNNNNGC	3 cut(s)	740, 797, 1120
HpyF3I	CTNAG	6 cut(s)	53, 108, 186, 240, 514, 570
HpySE526I	ACGT	1 cut(s)	592
Hsp92II	CATG	4 cut(s)	530, 967, 1019, 1114
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	4 cut(s)	217, 277, 364, 816
LmnI	GCTCC	3 cut(s)	109, 421, 1069
Lsp1109I	GCAGC	4 cut(s)	145, 213, 421, 1006
LweI	GCATC	5 cut(s)	112, 340, 361, 531, 721
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	1 cut(s)	592
MaeIII	GTNAC	2 cut(s)	7, 23
MalI	GATC	4 cut(s)	219, 279, 366, 818
MboI	GATC	4 cut(s)	217, 277, 364, 816
MflI	RGATCY	1 cut(s)	364
MluCI	AATT	5 cut(s)	63, 303, 600, 644, 1041
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	1 cut(s)	1091
MroXI	GAANNNNTTC	1 cut(s)	176
MseI	TTAA	3 cut(s)	81, 399, 768
MslI	CAYNNNNRTG	1 cut(s)	984
MspR9I	CCNGG	3 cut(s)	96, 331, 814
MvaI	CCWGG	3 cut(s)	96, 331, 814
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	3 cut(s)	740, 797, 1120
NdeII	GATC	4 cut(s)	217, 277, 364, 816
NlaIII	CATG	4 cut(s)	530, 967, 1019, 1114
NlaIV	GGNNCC	2 cut(s)	366, 1154
NmuCI	GTSAC	2 cut(s)	7, 23
NruI	TCGCGA	1 cut(s)	261
OliI	CACNNNNGTG	1 cut(s)	984
PaeR7I	CTCGAG	1 cut(s)	167
PaqCI	CACCTGC	1 cut(s)	5
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	494, 922
PkrI	GCNGC	5 cut(s)	157, 160, 228, 436, 1021
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
Psp6I	CCWGG	3 cut(s)	94, 329, 812
PspGI	CCWGG	3 cut(s)	94, 329, 812
PspN4I	GGNNCC	2 cut(s)	366, 1154
PspPI	GGNCC	1 cut(s)	1152
PstI	CTGCAG	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	364
RruI	TCGCGA	1 cut(s)	261
RsaI	GTAC	1 cut(s)	974
RsaNI	GTAC	1 cut(s)	973
RseI	CAYNNNNRTG	1 cut(s)	984
SaqAI	TTAA	3 cut(s)	81, 399, 768
SatI	GCNGC	5 cut(s)	156, 159, 227, 435, 1020
Sau3AI	GATC	4 cut(s)	217, 277, 364, 816
Sau96I	GGNCC	1 cut(s)	1152
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	3 cut(s)	96, 331, 814
SfaNI	GCATC	5 cut(s)	112, 340, 361, 531, 721
SfcI	CTRYAG	1 cut(s)	12
Sfr274I	CTCGAG	1 cut(s)	167
SinI	GGWCC	1 cut(s)	1152
SlaI	CTCGAG	1 cut(s)	167
SmiMI	CAYNNNNRTG	1 cut(s)	984
SmlI	CTYRAG	2 cut(s)	167, 545
SmoI	CTYRAG	2 cut(s)	167, 545
Sse9I	AATT	5 cut(s)	63, 303, 600, 644, 1041
SsiI	CCGC	2 cut(s)	155, 292
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	3 cut(s)	94, 329, 812
StyI	CCWWGG	2 cut(s)	221, 564
TaaI	ACNGT	2 cut(s)	31, 1027
TaiI	ACGT	1 cut(s)	595
TaqI	TCGA	2 cut(s)	168, 1132
TaqII	GACCGA	1 cut(s)	1118
TasI	AATT	5 cut(s)	63, 303, 600, 644, 1041
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	2 cut(s)	494, 922
Tru1I	TTAA	3 cut(s)	81, 399, 768
Tru9I	TTAA	3 cut(s)	81, 399, 768
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	2 cut(s)	7, 23
TseI	GCWGC	4 cut(s)	158, 226, 434, 1019
Tsp45I	GTSAC	2 cut(s)	7, 23
TspDTI	ATGAA	4 cut(s)	717, 777, 801, 952
TspGWI	ACGGA	1 cut(s)	1182
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	1152
XapI	RAATTY	1 cut(s)	1041
XcmI	CCANNNNNNNNNTGG	1 cut(s)	951
XhoI	CTCGAG	1 cut(s)	167
XmaJI	CCTAGG	1 cut(s)	221
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.