Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038141.1

Orthogroup ID

OG0002954

Physical Location & Seq

Genomic Coordinates Forward (+)

10 .. 1056

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038141.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atgtccgcggctgcctccctggagaaagcctttcccactcaggattattcggatgttggaaggaaagatgatcctaggctgcgtcgtttggctgagagcaggatagataatcgcgaggatgttagggctgatcataggcgtatccggcaagctgaaattgtttctacaattgaagaggaagctaagaggcaggaagggatagatgcggaagaagaggatcctgatgctttagaggaaaggaggagaaggattaaggaaaggttgcgtcagagggagcaagaagaagctccactcctcccctcggaagatgaggaagaagataaggaagaggaggaggaagaggaatcagagtattcaactgactcagaagatgagcatggtggcatgatgatgctgaagccagtctttgttccgaaggctgagagagatacaattgctgaacgtgagcgaattgaggcagaagagttggccctcgaggaagcaaggaagaaaaaattggaggcgaggaagagagagacaaagcagattgtggttgaggaaattcgaaaggatgaagagattcagaagggtatggaacaggacgctaacattgctgatattgatactgatgatgaacttaatgaggcagaggagtatgaagcttggaaggcaagagagattgccaggatcaagagggatagagaggagagggaagctatgttgaaggaaaaggaagagatagaaagagtaagaaatatgacagaggaagagaggagggaatgggagaggaagaatcctaaacctgcacctcgaccaaagcaaaagtggaggttcatgcagaaatattaccacaaaggtgctttcttccagtcagatgcagatgaccacgctgcaactgttggaacagatggaattttcactcgtgatttctctgctccaactggagaagataagatggataaaactattttgccgaaggtcatgcaagtcaagcattttggtcgtagtggaaggacaaaatggacccatcttgtcaatgaggatactactgactggaacaatccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFAP1

Protein Analysis

348

Amino Acids

41.29

Weight (kDa)

4.87

Isoelectric Point (pI)

69.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08580 AT4G08580 AT5G17900
fragaria_vesca	FvH4_5g26300
malus_domestica	MD01G1001200.v1.1 MD15G1341800.v1.1
prunus_persica	Prupe.4G226700_v2.0.a1 Prupe.6G162200_v2.0.a1 Prupe.6G162200_v2.0.a1 Prupe.6G162200_v2.0.a1
pyrus_communis	pycom15g30230
rosa_chinensis	RchiOBHm_Chr2g0119581 RchiOBHm_Chr7g0222731
rosa_laevigata	RLG00000002028 RLG00000018143 RLG00000018473 RLG00000018476
rosa_multiflora	Rmu_co8450215.1_g000001 Rmu_sc0002868.1_g000058 Rmu_sc0007870.1_g000005 Rmu_sc0025009.1_g000003 Rmu_sc0038141.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124260 Rroxscaffold_3G00236520
rosa_rugosa	Rorug02G0222100 Rorug02G0222200 Rorug07G0212100 Rorug07G0212100
rosa_samantha	Rh2AG279700 Rh2BG291400 Rh2DG286400 Rh2DG305600 Rh7AG356300 Rh7BG344700 Rh7CG373800 Rh7DG350600
rosa_wichuraiana	Rw2G022340 Rw7G030230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	473
Acc36I	ACCTGC	1 cut(s)	790
AccII	CGCG	2 cut(s)	8, 114
AciI	CCGC	3 cut(s)	6, 8, 206
AclWI	GGATC	4 cut(s)	65, 212, 225, 674
AcsI	RAATTY	2 cut(s)	540, 891
AcuI	CTGAAG	1 cut(s)	416
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	3 cut(s)	173, 357, 703
AjnI	CCWGG	2 cut(s)	18, 662
AjuI	GAANNNNNNNTTGG	2 cut(s)	479, 511
AleI	CACNNNNGTG	1 cut(s)	834
AluBI	AGCT	5 cut(s)	152, 182, 287, 641, 695
AluI	AGCT	5 cut(s)	152, 182, 287, 641, 695
Alw26I	GTCTC	1 cut(s)	509
AlwI	GGATC	4 cut(s)	65, 212, 225, 674
Ama87I	CYCGRG	1 cut(s)	473
AoxI	GGCC	1 cut(s)	468
ApeKI	GCWGC	3 cut(s)	11, 79, 869
ApoI	RAATTY	2 cut(s)	540, 891
Asp700I	GAANNNNTTC	1 cut(s)	558
AspA2I	CCTAGG	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	469, 1002
AsuII	TTCGAA	1 cut(s)	544
AvaI	CYCGRG	1 cut(s)	473
AvaII	GGWCC	1 cut(s)	1002
AvrII	CCTAGG	1 cut(s)	74
BamHI	GGATCC	1 cut(s)	217
BauI	CACGAG	1 cut(s)	900
BbvI	GCAGC	2 cut(s)	66, 856
BccI	CCATC	3 cut(s)	881, 928, 1014
BcgI	CGANNNNNNTGC	4 cut(s)	943, 962, 977, 996
BciT130I	CCWGG	2 cut(s)	20, 664
BciVI	GTATCC	2 cut(s)	152, 1015
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	509
BfaI	CTAG	1 cut(s)	75
BfuAI	ACCTGC	1 cut(s)	790
BfuI	GTATCC	2 cut(s)	152, 1015
BisI	GCNGC	4 cut(s)	9, 12, 80, 870
BlnI	CCTAGG	1 cut(s)	74
BlsI	GCNGC	4 cut(s)	10, 13, 81, 871
Bme1390I	CCNGG	2 cut(s)	20, 664
Bme18I	GGWCC	1 cut(s)	1002
BmeT110I	CYCGRG	1 cut(s)	473
BmgT120I	GGNCC	2 cut(s)	469, 1002
BmiI	GGNNCC	2 cut(s)	219, 1004
BmrFI	CCNGG	2 cut(s)	20, 664
BmsI	GCATC	4 cut(s)	193, 214, 381, 844
BpmI	CTGGAG	2 cut(s)	41, 942
Bpu14I	TTCGAA	1 cut(s)	544
BsaJI	CCNNGG	4 cut(s)	6, 18, 74, 300
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	4 cut(s)	401, 847, 925, 1037
Bse3DI	GCAATG	1 cut(s)	588
BseBI	CCWGG	2 cut(s)	20, 664
BseDI	CCNNGG	4 cut(s)	6, 18, 74, 300
BseGI	GGATG	3 cut(s)	58, 124, 556
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	4 cut(s)	53, 84, 378, 411
BseNI	ACTGG	4 cut(s)	401, 847, 925, 1037
BseRI	GAGGAG	7 cut(s)	256, 284, 344, 347, 644, 698, 766
BseXI	GCAGC	2 cut(s)	66, 856
BsgI	GTGCAG	1 cut(s)	768
Bsh1236I	CGCG	2 cut(s)	8, 114
BshFI	GGCC	1 cut(s)	470
BsiHKCI	CYCGRG	1 cut(s)	473
BsiSI	CCGG	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	509
BsnI	GGCC	1 cut(s)	470
BsoBI	CYCGRG	1 cut(s)	473
Bsp119I	TTCGAA	1 cut(s)	544
Bsp143I	GATC	4 cut(s)	70, 130, 217, 666
Bsp68I	TCGCGA	1 cut(s)	114
BspACI	CCGC	3 cut(s)	6, 8, 206
BspANI	GGCC	1 cut(s)	470
BspCNI	CTCAG	4 cut(s)	52, 85, 377, 412
BspFNI	CGCG	2 cut(s)	8, 114
BspLI	GGNNCC	2 cut(s)	219, 1004
BspMI	ACCTGC	1 cut(s)	790
BspPI	GGATC	4 cut(s)	65, 212, 225, 674
BspT104I	TTCGAA	1 cut(s)	544
BsrDI	GCAATG	1 cut(s)	588
BsrI	ACTGG	4 cut(s)	401, 847, 925, 1037
BssECI	CCNNGG	4 cut(s)	6, 18, 74, 300
BssMI	GATC	4 cut(s)	70, 130, 217, 666
BssSI	CACGAG	1 cut(s)	900
BssT1I	CCWWGG	1 cut(s)	74
Bst2BI	CACGAG	1 cut(s)	900
Bst2UI	CCWGG	2 cut(s)	20, 664
Bst4CI	ACNGT	1 cut(s)	877
Bst6I	CTCTTC	9 cut(s)	168, 207, 321, 333, 456, 503, 549, 708, 741
BstBI	TTCGAA	1 cut(s)	544
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	5 cut(s)	39, 93, 183, 364, 420
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	3 cut(s)	58, 124, 556
BstFNI	CGCG	2 cut(s)	8, 114
BstKTI	GATC	4 cut(s)	73, 133, 220, 669
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	4 cut(s)	70, 130, 217, 666
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 590, 647, 970
BstNI	CCWGG	2 cut(s)	20, 664
BstSCI	CCNGG	2 cut(s)	18, 662
BstUI	CGCG	2 cut(s)	8, 114
BstV1I	GCAGC	2 cut(s)	66, 856
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuI	GTATCC	2 cut(s)	152, 1015
BsuRI	GGCC	1 cut(s)	470
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	3 cut(s)	58, 124, 556
BtuMI	TCGCGA	1 cut(s)	114
BveI	ACCTGC	1 cut(s)	790
Cac8I	GCNNGC	1 cut(s)	150
Cfr13I	GGNCC	2 cut(s)	469, 1002
Cfr42I	CCGCGG	1 cut(s)	9
CseI	GACGC	3 cut(s)	71, 254, 590
CviAII	CATG	4 cut(s)	377, 385, 814, 961
DdeI	CTNAG	5 cut(s)	39, 93, 183, 364, 420
DpnI	GATC	4 cut(s)	72, 132, 219, 668
DpnII	GATC	4 cut(s)	70, 130, 217, 666
Eam1104I	CTCTTC	9 cut(s)	168, 207, 321, 333, 456, 503, 549, 708, 741
EarI	CTCTTC	9 cut(s)	168, 207, 321, 333, 456, 503, 549, 708, 741
Eco130I	CCWWGG	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	1002
Eco57I	CTGAAG	1 cut(s)	416
Eco88I	CYCGRG	1 cut(s)	473
EcoRII	CCWGG	2 cut(s)	18, 662
EcoT14I	CCWWGG	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	4 cut(s)	380, 388, 817, 964
FaiI	YATR	9 cut(s)	135, 378, 386, 572, 636, 698, 737, 815, 962
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FatI	CATG	4 cut(s)	376, 384, 813, 960
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	4 cut(s)	9, 12, 80, 870
FokI	GGATG	3 cut(s)	65, 131, 563
Fsp4HI	GCNGC	4 cut(s)	9, 12, 80, 870
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	4 cut(s)	9, 12, 80, 870
GsuI	CTGGAG	2 cut(s)	41, 942
HaeIII	GGCC	1 cut(s)	470
HapII	CCGG	1 cut(s)	145
HgaI	GACGC	3 cut(s)	71, 254, 590
Hin1II	CATG	4 cut(s)	380, 388, 817, 964
HindIII	AAGCTT	1 cut(s)	639
HinfI	GANTC	4 cut(s)	344, 362, 559, 772
HpaII	CCGG	1 cut(s)	145
Hpy188I	TCNGA	8 cut(s)	52, 270, 304, 349, 367, 414, 564, 853
Hpy188III	TCNNGA	5 cut(s)	41, 113, 221, 670, 902
Hpy99I	CGWCG	1 cut(s)	87
HpyAV	CCTTC	9 cut(s)	54, 188, 240, 409, 559, 640, 697, 949, 984
HpyCH4III	ACNGT	1 cut(s)	877
HpyCH4IV	ACGT	1 cut(s)	442
HpyCH4V	TGCA	5 cut(s)	785, 817, 857, 872, 964
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 590, 647, 970
HpyF3I	CTNAG	5 cut(s)	39, 93, 183, 364, 420
HpySE526I	ACGT	1 cut(s)	442
Hsp92II	CATG	4 cut(s)	380, 388, 817, 964
Ksp22I	TGATCA	1 cut(s)	130
KspI	CCGCGG	1 cut(s)	9
Kzo9I	GATC	4 cut(s)	70, 130, 217, 666
LmnI	GCTCC	3 cut(s)	274, 292, 919
Lsp1109I	GCAGC	2 cut(s)	66, 856
LweI	GCATC	4 cut(s)	193, 214, 381, 844
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	1 cut(s)	442
MalI	GATC	4 cut(s)	72, 132, 219, 668
MboI	GATC	4 cut(s)	70, 130, 217, 666
MfeI	CAATTG	2 cut(s)	168, 432
MflI	RGATCY	1 cut(s)	217
MluCI	AATT	7 cut(s)	156, 168, 432, 450, 494, 540, 891
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	3 cut(s)	37, 859, 941
MroXI	GAANNNNTTC	1 cut(s)	558
MseI	TTAA	2 cut(s)	252, 618
MslI	CAYNNNNRTG	2 cut(s)	389, 834
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	2 cut(s)	20, 664
MunI	CAATTG	2 cut(s)	168, 432
MvaI	CCWGG	2 cut(s)	20, 664
MvnI	CGCG	2 cut(s)	8, 114
MwoI	GCNNNNNNNGC	4 cut(s)	145, 590, 647, 970
NdeII	GATC	4 cut(s)	70, 130, 217, 666
NlaIII	CATG	4 cut(s)	380, 388, 817, 964
NlaIV	GGNNCC	2 cut(s)	219, 1004
NruI	TCGCGA	1 cut(s)	114
NspV	TTCGAA	1 cut(s)	544
OliI	CACNNNNGTG	1 cut(s)	834
PaeR7I	CTCGAG	1 cut(s)	473
PdmI	GAANNNNTTC	1 cut(s)	558
PfeI	GAWTC	3 cut(s)	344, 559, 772
PkrI	GCNGC	4 cut(s)	10, 13, 81, 871
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
Psp6I	CCWGG	2 cut(s)	18, 662
PspGI	CCWGG	2 cut(s)	18, 662
PspN4I	GGNNCC	2 cut(s)	219, 1004
PspPI	GGNCC	2 cut(s)	469, 1002
PspXI	VCTCGAGB	1 cut(s)	473
PsuI	RGATCY	1 cut(s)	217
RruI	TCGCGA	1 cut(s)	114
RseI	CAYNNNNRTG	2 cut(s)	389, 834
SacII	CCGCGG	1 cut(s)	9
SaqAI	TTAA	2 cut(s)	252, 618
SatI	GCNGC	4 cut(s)	9, 12, 80, 870
Sau3AI	GATC	4 cut(s)	70, 130, 217, 666
Sau96I	GGNCC	2 cut(s)	469, 1002
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	2 cut(s)	20, 664
SfaNI	GCATC	4 cut(s)	193, 214, 381, 844
Sfr274I	CTCGAG	1 cut(s)	473
Sfr303I	CCGCGG	1 cut(s)	9
SfuI	TTCGAA	1 cut(s)	544
SgrBI	CCGCGG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	1002
SlaI	CTCGAG	1 cut(s)	473
SmiMI	CAYNNNNRTG	2 cut(s)	389, 834
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	7 cut(s)	156, 168, 432, 450, 494, 540, 891
SsiI	CCGC	3 cut(s)	6, 8, 206
SspI	AATATT	1 cut(s)	824
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	18, 662
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	877
TaiI	ACGT	1 cut(s)	445
TaqI	TCGA	3 cut(s)	474, 544, 790
TasI	AATT	7 cut(s)	156, 168, 432, 450, 494, 540, 891
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	3 cut(s)	344, 559, 772
Tru1I	TTAA	2 cut(s)	252, 618
Tru9I	TTAA	2 cut(s)	252, 618
TseI	GCWGC	3 cut(s)	11, 79, 869
TspDTI	ATGAA	4 cut(s)	567, 627, 651, 802
TspGWI	ACGGA	1 cut(s)	1032
VpaK11BI	GGWCC	1 cut(s)	1002
XapI	RAATTY	2 cut(s)	540, 891
XcmI	CCANNNNNNNNNTGG	1 cut(s)	801
XhoI	CTCGAG	1 cut(s)	473
XmaJI	CCTAGG	1 cut(s)	74
XmnI	GAANNNNTTC	1 cut(s)	558
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.