Rorug02G0222200

Microfibrillar-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002954
Physical Location & Seq
Reverse (-)
21520657 .. 21521850
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0222200.1

Sequence Viewer

Length: 1170 bp
ATGGATGTCCCATACCATATTATTCCATACCTCAAATTAGCTCACGATGGACTTGAAGCCGGTATTTATGAATTTCTAGAAACTCATACTCCGGATTGGATTATTCATGATTTTTCCCCTCATTGGTTGCCACCAATAGCTACAAAGCTAGGCATATCACGAGCCTATTTCAGCATCCTCAACGCTGCCCTTGTATGCTCCTTGGGGCCAACAGCACCTGATGTAAAAGAGCGCTATGATCCTAGAACACGGCCAGAAGATTTCACTGTCCCTCCCGAGTGGGTTCCTTTTCCTAATTCCAAATTGGCTTTTAGGCCATTCGAAGCCAAGAAAATTTTCGAGGCTACTGTACAAAACCCTTCGGGCATTTCGGATTTTTTGCGCTGTGAGTTGACGATCAAAGATTGTGAACTCTATCTAGTTCGAAGTTGCAAAGAGATCGAGGGTGAGTGGCTGGATTTGGCTCAGGATATAATTCATCCAACACCTTTAGTGCTTCCAGTGGGGTTATTGCCACCGATAGTAGAGCAATCTGATGAAGACAAGGAGGATAAGAGCTGGACTATAATTGACGACTGGTTAAACAAGCAAGAGAAGGGGACTGTTGTTTATGTTGCGTTAGGAACTGAAGTGAATCCAAGTCGAGAAGACATCACAGAATTGGCTCTGGGATTGGAACTTTCTGGGTTGCCTTTCTTTTGGGTACTAAGGAAATTACCAAGTGGTTCAGGGGATGACGGGTTTGAGCATCGAACCGAGGGCCGGGGGCTTGTTTGGAGAACTTGGGCACCTCAGCCCAAAATCTTGGCTCACAAGTTTATTGGCGGTTTCTTGACTCATTGCGGTTGGAGTTCAATCATAGAGGGACTCCATTATGGACGTCCTCTTATGATGCTTCCTTTCTTAATTGACCAAGGGCTAAATGCTAGGCTTTGGGACAAGAAGGTTGGAATTGAAGTACCGAGAGATGAGCAGAGTGGATCGTTTACGAGGGATTCGGTGGCCAAGTCACTGAAATTGGTTATGGTGGAGGAGGATGGAAAGGCTTATAGGGATGGGGCTAAGGAATTTAGTGCAACATTCAGAGACAGAGAGCTTCAAGATAGATACATGGACACATTCTTGGACTATTTAGAAAAGCATAAGAAAGGGAATGAGTTTGATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFAP1

Protein Analysis

389

Amino Acids

44.41

Weight (kDa)

5.1

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 193 - 367 6.2e-18 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 883
AccB1I GGYRCC 1 cut(s) 787
AccIII TCCGGA 1 cut(s) 91
AciI CCGC 2 cut(s) 825, 843
AclWI GGATC 2 cut(s) 233, 988
AcoI YGGCCR 2 cut(s) 251, 1002
AcsI RAATTY 3 cut(s) 71, 333, 1067
AcuI CTGAAG 1 cut(s) 648
AcyI GRCGYC 1 cut(s) 880
AfaI GTAC 3 cut(s) 351, 705, 960
AfeI AGCGCT 1 cut(s) 233
AfiI CCNNNNNNNGG 2 cut(s) 123, 762
AgsI TTSAA 4 cut(s) 56, 855, 956, 1100
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AluBI AGCT 5 cut(s) 41, 140, 148, 558, 1096
AluI AGCT 5 cut(s) 41, 140, 148, 558, 1096
Alw26I GTCTC 1 cut(s) 1080
AlwI GGATC 2 cut(s) 233, 988
AlwNI CAGNNNCTG 1 cut(s) 218
Ama87I CYCGRG 1 cut(s) 275
Aor13HI TCCGGA 1 cut(s) 91
Aor51HI AGCGCT 1 cut(s) 233
AoxI GGCC 5 cut(s) 206, 251, 314, 760, 1002
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 3 cut(s) 71, 333, 1067
Asp700I GAANNNNTTC 1 cut(s) 335
AspLEI GCGC 2 cut(s) 234, 384
AspS9I GGNCC 2 cut(s) 206, 760
AsuC2I CCSGG 1 cut(s) 764
AsuHPI GGTGA 1 cut(s) 458
AsuII TTCGAA 2 cut(s) 321, 424
AvaI CYCGRG 1 cut(s) 275
BaeGI GKGCMC 1 cut(s) 790
BalI TGGCCA 1 cut(s) 1004
BanI GGYRCC 1 cut(s) 787
BauI CACGAG 1 cut(s) 159
BbsI GAAGAC 2 cut(s) 546, 654
BbvCI CCTCAGC 1 cut(s) 792
BbvI GCAGC 1 cut(s) 172
BccI CCATC 3 cut(s) 41, 1031, 1049
BceAI ACGGC 1 cut(s) 266
BcgI CGANNNNNNTGC 2 cut(s) 421, 455
BclI TGATCA 1 cut(s) 1162
BcnI CCSGG 1 cut(s) 764
BcoDI GTCTC 1 cut(s) 1080
BfaI CTAG 5 cut(s) 77, 149, 243, 419, 927
BfoI RGCGCY 1 cut(s) 235
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 764
BmeT110I CYCGRG 1 cut(s) 275
BmgT120I GGNCC 2 cut(s) 206, 760
BmiI GGNNCC 3 cut(s) 207, 285, 789
BmrFI CCNGG 1 cut(s) 764
BmsI GCATC 3 cut(s) 183, 757, 882
BpiI GAAGAC 2 cut(s) 546, 654
Bpu10I CCTNAGC 3 cut(s) 465, 792, 1062
Bpu14I TTCGAA 2 cut(s) 321, 424
BpuMI CCSGG 1 cut(s) 764
BsaHI GRCGYC 1 cut(s) 880
BsaJI CCNNGG 4 cut(s) 201, 756, 763, 913
BsaWI WCCGGW 1 cut(s) 91
BsaXI ACNNNNNCTCC 4 cut(s) 73, 103, 256, 286
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 762
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 2 cut(s) 500, 581
Bse3DI GCAATG 1 cut(s) 838
BseAI TCCGGA 1 cut(s) 91
BseDI CCNNGG 4 cut(s) 201, 756, 763, 913
BseGI GGATG 6 cut(s) 10, 174, 478, 739, 1042, 1060
BseLI CCNNNNNNNGG 2 cut(s) 123, 762
BseMI GCAATG 1 cut(s) 838
BseMII CTCAG 2 cut(s) 479, 806
BseNI ACTGG 2 cut(s) 500, 581
BseRI GAGGAG 1 cut(s) 1046
BseSI GKGCMC 1 cut(s) 790
BseXI GCAGC 1 cut(s) 172
BshFI GGCC 5 cut(s) 208, 253, 316, 762, 1004
BshNI GGYRCC 1 cut(s) 787
BsiHKCI CYCGRG 1 cut(s) 275
BsiSI CCGG 3 cut(s) 60, 92, 763
BslFI GGGAC 4 cut(s) 254, 613, 879, 950
BslI CCNNNNNNNGG 2 cut(s) 123, 762
BsmAI GTCTC 1 cut(s) 1080
BsmFI GGGAC 4 cut(s) 254, 613, 879, 950
BsnI GGCC 5 cut(s) 208, 253, 316, 762, 1004
BsoBI CYCGRG 1 cut(s) 275
Bsp119I TTCGAA 2 cut(s) 321, 424
Bsp1286I GDGCHC 1 cut(s) 790
Bsp13I TCCGGA 1 cut(s) 91
Bsp1407I TGTACA 1 cut(s) 349
Bsp143I GATC 5 cut(s) 238, 396, 438, 980, 1162
BspACI CCGC 2 cut(s) 825, 843
BspANI GGCC 5 cut(s) 208, 253, 316, 762, 1004
BspCNI CTCAG 2 cut(s) 478, 805
BspEI TCCGGA 1 cut(s) 91
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 3 cut(s) 207, 285, 789
BspPI GGATC 2 cut(s) 233, 988
BspT104I TTCGAA 2 cut(s) 321, 424
BspT107I GGYRCC 1 cut(s) 787
BsrDI GCAATG 1 cut(s) 838
BsrFI RCCGGY 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 349
BsrI ACTGG 2 cut(s) 500, 581
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 4 cut(s) 201, 756, 763, 913
BssMI GATC 5 cut(s) 238, 396, 438, 980, 1162
BssNI GRCGYC 1 cut(s) 880
BssSI CACGAG 1 cut(s) 159
BssT1I CCWWGG 2 cut(s) 201, 913
Bst2BI CACGAG 1 cut(s) 159
Bst4CI ACNGT 3 cut(s) 268, 349, 604
BstACI GRCGYC 1 cut(s) 880
BstAUI TGTACA 1 cut(s) 349
BstBI TTCGAA 2 cut(s) 321, 424
BstDEI CTNAG 4 cut(s) 465, 707, 792, 1062
BstF5I GGATG 6 cut(s) 10, 174, 478, 739, 1042, 1060
BstH2I RGCGCY 1 cut(s) 235
BstHHI GCGC 2 cut(s) 234, 384
BstKTI GATC 5 cut(s) 241, 399, 441, 983, 1165
BstMAI GTCTC 1 cut(s) 1080
BstMBI GATC 5 cut(s) 238, 396, 438, 980, 1162
BstSCI CCNGG 1 cut(s) 762
BstSLI GKGCMC 1 cut(s) 790
BstV1I GCAGC 1 cut(s) 172
BstV2I GAAGAC 2 cut(s) 546, 654
BstXI CCANNNNNNTGG 1 cut(s) 805
BsuRI GGCC 5 cut(s) 208, 253, 316, 762, 1004
BtsCI GGATG 6 cut(s) 10, 174, 478, 739, 1042, 1060
BtsIMutI CAGTG 3 cut(s) 264, 507, 1010
CaiI CAGNNNCTG 1 cut(s) 218
CciI TCATGA 1 cut(s) 106
CfoI GCGC 2 cut(s) 234, 384
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 2 cut(s) 206, 760
Csp6I GTAC 3 cut(s) 350, 704, 959
CviAII CATG 2 cut(s) 107, 1111
CviQI GTAC 3 cut(s) 350, 704, 959
DdeI CTNAG 4 cut(s) 465, 707, 792, 1062
DpnI GATC 5 cut(s) 240, 398, 440, 982, 1164
DpnII GATC 5 cut(s) 238, 396, 438, 980, 1162
EaeI YGGCCR 2 cut(s) 251, 1002
Eco130I CCWWGG 2 cut(s) 201, 913
Eco47III AGCGCT 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 648
Eco88I CYCGRG 1 cut(s) 275
EcoT14I CCWWGG 2 cut(s) 201, 913
ErhI CCWWGG 2 cut(s) 201, 913
FaeI CATG 2 cut(s) 110, 1114
FaqI GGGAC 4 cut(s) 254, 613, 879, 950
FatI CATG 2 cut(s) 106, 1110
FbaI TGATCA 1 cut(s) 1162
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 6 cut(s) 17, 161, 465, 746, 1049, 1067
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 5 cut(s) 77, 149, 243, 419, 927
GlaI GCGC 2 cut(s) 233, 383
GluI GCNGC 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 235
HaeIII GGCC 5 cut(s) 208, 253, 316, 762, 1004
HapII CCGG 3 cut(s) 60, 92, 763
HhaI GCGC 2 cut(s) 234, 384
Hin1I GRCGYC 1 cut(s) 880
Hin1II CATG 2 cut(s) 110, 1114
Hin6I GCGC 2 cut(s) 232, 382
HinP1I GCGC 2 cut(s) 232, 382
HincII GTYRAC 1 cut(s) 393
HindII GTYRAC 1 cut(s) 393
HinfI GANTC 4 cut(s) 634, 835, 867, 995
HpaII CCGG 3 cut(s) 60, 92, 763
HphI GGTGA 1 cut(s) 458
Hpy166II GTNNAC 3 cut(s) 393, 410, 987
Hpy188I TCNGA 3 cut(s) 373, 535, 1085
Hpy8I GTNNAC 3 cut(s) 393, 410, 987
HpyAV CCTTC 3 cut(s) 369, 589, 937
HpyCH4III ACNGT 3 cut(s) 268, 349, 604
HpyCH4IV ACGT 1 cut(s) 880
HpyCH4V TGCA 2 cut(s) 432, 1076
HpyF3I CTNAG 4 cut(s) 465, 707, 792, 1062
HpySE526I ACGT 1 cut(s) 880
Hsp92I GRCGYC 1 cut(s) 880
Hsp92II CATG 2 cut(s) 110, 1114
HspAI GCGC 2 cut(s) 232, 382
Kpn2I TCCGGA 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 1162
Kzo9I GATC 5 cut(s) 238, 396, 438, 980, 1162
LmnI GCTCC 1 cut(s) 203
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 3 cut(s) 183, 757, 882
MaeI CTAG 5 cut(s) 77, 149, 243, 419, 927
MaeII ACGT 1 cut(s) 880
MaeIII GTNAC 1 cut(s) 1008
MalI GATC 5 cut(s) 240, 398, 440, 982, 1164
MboI GATC 5 cut(s) 238, 396, 438, 980, 1162
MboII GAAGA 3 cut(s) 269, 551, 659
MhlI GDGCHC 1 cut(s) 790
MlsI TGGCCA 1 cut(s) 1004
MluNI TGGCCA 1 cut(s) 1004
MlyI GAGTC 2 cut(s) 829, 861
MmeI TCCRAC 3 cut(s) 506, 827, 928
Mox20I TGGCCA 1 cut(s) 1004
MroI TCCGGA 1 cut(s) 91
MroXI GAANNNNTTC 1 cut(s) 335
MscI TGGCCA 1 cut(s) 1004
MseI TTAA 2 cut(s) 581, 905
Msp20I TGGCCA 1 cut(s) 1004
MspI CCGG 3 cut(s) 60, 92, 763
MspR9I CCNGG 1 cut(s) 764
NciI CCSGG 1 cut(s) 764
NdeII GATC 5 cut(s) 238, 396, 438, 980, 1162
NlaIII CATG 2 cut(s) 110, 1114
NlaIV GGNNCC 3 cut(s) 207, 285, 789
NmuCI GTSAC 1 cut(s) 1008
NspV TTCGAA 2 cut(s) 321, 424
PagI TCATGA 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 335
PfeI GAWTC 2 cut(s) 634, 995
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 2 cut(s) 829, 861
PpsI GAGTC 2 cut(s) 829, 861
PspN4I GGNNCC 3 cut(s) 207, 285, 789
PspPI GGNCC 2 cut(s) 206, 760
PstNI CAGNNNCTG 1 cut(s) 218
RsaI GTAC 3 cut(s) 351, 705, 960
RsaNI GTAC 3 cut(s) 350, 704, 959
SaqAI TTAA 2 cut(s) 581, 905
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 5 cut(s) 238, 396, 438, 980, 1162
Sau96I GGNCC 2 cut(s) 206, 760
SchI GAGTC 2 cut(s) 829, 861
ScrFI CCNGG 1 cut(s) 764
SduI GDGCHC 1 cut(s) 790
SfaNI GCATC 3 cut(s) 183, 757, 882
SfuI TTCGAA 2 cut(s) 321, 424
SsiI CCGC 2 cut(s) 825, 843
SspMI CTAG 5 cut(s) 77, 149, 243, 419, 927
StyD4I CCNGG 1 cut(s) 762
StyI CCWWGG 2 cut(s) 201, 913
TaaI ACNGT 3 cut(s) 268, 349, 604
TaiI ACGT 1 cut(s) 883
TaqI TCGA 6 cut(s) 321, 339, 424, 441, 643, 751
TatI WGTACW 1 cut(s) 349
TfiI GAWTC 2 cut(s) 634, 995
Tru1I TTAA 2 cut(s) 581, 905
Tru9I TTAA 2 cut(s) 581, 905
TscAI CASTG 3 cut(s) 271, 507, 1017
TseFI GTSAC 1 cut(s) 1008
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 1008
TspDTI ATGAA 4 cut(s) 84, 95, 467, 552
TspRI CASTG 3 cut(s) 271, 507, 1017
XapI RAATTY 3 cut(s) 71, 333, 1067
XbaI TCTAGA 1 cut(s) 76
XmnI GAANNNNTTC 1 cut(s) 335
XspI CTAG 5 cut(s) 77, 149, 243, 419, 927
ZraI GACGTC 1 cut(s) 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.