Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002954

Physical Location & Seq

Genomic Coordinates Reverse (-)

42798438 .. 42800935

Gene Structure 2498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G030230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGTCGGTGACTGCAGGTGTTAGTGACACTGTGATTGCCATTAGGGATAAGCTGAGAGGTAAAATTGGACAGACTAAAGTTAAAAGGTATTGGCCTGGAAAAGCTCCTGAGTGGGGAGATGATGCCGACGAAGATGGCGATATTAGGTTGTCCGCGGCTGCCTCCCTCGAGAAAGCCTTCCCCACTCAGGATTATTCCGATATTGCAAGGAAAGATGATCCTAGGCTGCGTCGTTTGGCTGAGAGCAGGATAGATAATCGCGACGATGTTAGGGCTGATCACAGGCGTATCCGCCAAGCTGAAATTGTTTCAACTATTGAAGAGGAAGCCAGGAGGCAGGAAGGGATAGATGCCGAAGAAGAGGATCCTGATGCTTTAGAGGAAAGGAGAAGAAGGATTAAGGAAAGGTTGCGTGAGAGGGAGCAAGAAGAAGCTGCACTCCTCCCCTCCGAAGATGAGGAAGAGGATAAGGAAGAAGAGGAGGAGGAAGAGGAATCAGAGTATTCAACTGACTCAGAAGATGAACATGGTGGTATGATGATGCTCAAGCCAGTCTTTGTTCCCAAGGCTGAGAGAGATACCATCGCTGAACGTGAGCGAATTGAGGCAGAAGAACTGGCCTTTGAGGAAGCAAGGAAGAAAAAATTGGAGGAGAGGAAGAGAGAGACAAAGCAGATTGTGGTTGAGGAAATCCGAAAGGATGAAGAGATACAGAAAAGTATGGAACAGGATGCTAACATTGCTGATATTGATACTGATGATGAACTTAACGAGGCAGAGGAAGCGATGTTGAAGGAAAAGGAAGAGATTGAAAGGGTAAGAAATATGACAGAGGAAGAGAGGAGGGAATGGGAGAGGAAGAATCCTAAACCTGCACCAAAACCAAAGCAAAAGTGGAGGTTCATGCAGAAGTACCACCACAAAGGTGCTTTCTTCCAGTCAGACGCAGATGACCATGCTGCAACTGTGGGAACAGATGGAATTTTTACTCGTGATTTCTCTGCTCCAACTGGAGAAGATAAAATGGACAAAACTATATTGCCGAAGGTCATGCAAGTCAAGCATTTCGGTCGAAGTGGAAGGACAAAATGGACCCATCTTGTCAATGAGGATACTACTGACTGGAACAATCCGTGGACCTACAATGATCCTCTTCGGGCAAAGTATAATGCAAAAATGGCCGGAATGAATGCACCTATAGAAAAACCCAGAGGAAGCAAGAAATTGAAGGATCGGGAGTATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFAP1

Protein Analysis

415

Amino Acids

48.64

Weight (kDa)

4.97

Isoelectric Point (pI)

60.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFAP1	PF06991	171 - 262	2.5e-16	Microfibril-associated/Pre-mRNA processing
MFAP1	PF06991	258 - 372	1.9e-43	Microfibril-associated/Pre-mRNA processing

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08580 AT4G08580 AT5G17900
fragaria_vesca	FvH4_5g26300
malus_domestica	MD01G1001200.v1.1 MD15G1341800.v1.1
prunus_persica	Prupe.4G226700_v2.0.a1 Prupe.6G162200_v2.0.a1 Prupe.6G162200_v2.0.a1 Prupe.6G162200_v2.0.a1
pyrus_communis	pycom15g30230
rosa_chinensis	RchiOBHm_Chr2g0119581 RchiOBHm_Chr7g0222731
rosa_laevigata	RLG00000002028 RLG00000018143 RLG00000018473 RLG00000018476
rosa_multiflora	Rmu_co8450215.1_g000001 Rmu_sc0002868.1_g000058 Rmu_sc0007870.1_g000005 Rmu_sc0025009.1_g000003 Rmu_sc0038141.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124260 Rroxscaffold_3G00236520
rosa_rugosa	Rorug02G0222100 Rorug02G0222200 Rorug07G0212100 Rorug07G0212100
rosa_samantha	Rh2AG279700 Rh2BG291400 Rh2DG286400 Rh2DG305600 Rh7AG356300 Rh7BG344700 Rh7CG373800 Rh7DG350600
rosa_wichuraiana	Rw2G022340 Rw7G030230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	5
Acc36I	ACCTGC	2 cut(s)	5, 880
AccII	CGCG	2 cut(s)	155, 261
AciI	CCGC	3 cut(s)	153, 155, 292
AclWI	GGATC	5 cut(s)	212, 359, 372, 1142, 1239
AcoI	YGGCCR	1 cut(s)	1179
AcsI	RAATTY	1 cut(s)	981
AfaI	GTAC	1 cut(s)	914
AfiI	CCNNNNNNNGG	2 cut(s)	113, 187
AgsI	TTSAA	6 cut(s)	312, 320, 507, 793, 812, 1228
AjnI	CCWGG	2 cut(s)	94, 329
AjuI	GAANNNNNNNTTGG	2 cut(s)	629, 661
AleI	CACNNNNGTG	1 cut(s)	924
AluBI	AGCT	4 cut(s)	52, 104, 299, 434
AluI	AGCT	4 cut(s)	52, 104, 299, 434
Alw26I	GTCTC	1 cut(s)	659
AlwI	GGATC	5 cut(s)	212, 359, 372, 1142, 1239
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	3 cut(s)	92, 618, 1179
ApeKI	GCWGC	4 cut(s)	158, 226, 434, 959
ApoI	RAATTY	1 cut(s)	981
Asp700I	GAANNNNTTC	1 cut(s)	176
AspA2I	CCTAGG	1 cut(s)	221
AspS9I	GGNCC	2 cut(s)	1092, 1137
AsuHPI	GGTGA	1 cut(s)	19
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	2 cut(s)	1092, 1137
AvrII	CCTAGG	1 cut(s)	221
BaeI	ACNNNNGTAYC	2 cut(s)	271, 304
BamHI	GGATCC	1 cut(s)	364
BauI	CACGAG	1 cut(s)	990
BbvI	GCAGC	4 cut(s)	145, 213, 421, 946
BccI	CCATC	4 cut(s)	128, 590, 971, 1104
BcgI	CGANNNNNNTGC	4 cut(s)	1033, 1052, 1067, 1086
BciT130I	CCWGG	2 cut(s)	96, 331
BciVI	GTATCC	2 cut(s)	299, 1105
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	659
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	2 cut(s)	12, 1197
BfuAI	ACCTGC	2 cut(s)	5, 880
BfuI	GTATCC	2 cut(s)	299, 1105
BisI	GCNGC	5 cut(s)	156, 159, 227, 435, 960
BlnI	CCTAGG	1 cut(s)	221
BlsI	GCNGC	5 cut(s)	157, 160, 228, 436, 961
Bme1390I	CCNGG	2 cut(s)	96, 331
Bme18I	GGWCC	2 cut(s)	1092, 1137
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	2 cut(s)	1092, 1137
BmiI	GGNNCC	2 cut(s)	366, 1094
BmrFI	CCNGG	2 cut(s)	96, 331
BmsI	GCATC	5 cut(s)	112, 340, 361, 531, 721
BpmI	CTGGAG	1 cut(s)	1032
BpuEI	CTTGAG	1 cut(s)	530
BsaJI	CCNNGG	4 cut(s)	153, 221, 564, 1133
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 187
Bse1I	ACTGG	5 cut(s)	551, 621, 937, 1015, 1127
Bse3DI	GCAATG	1 cut(s)	738
BseBI	CCWGG	2 cut(s)	96, 331
BseDI	CCNNGG	4 cut(s)	153, 221, 564, 1133
BseGI	GGATG	2 cut(s)	706, 736
BseLI	CCNNNNNNNGG	2 cut(s)	113, 187
BseMI	GCAATG	1 cut(s)	738
BseMII	CTCAG	6 cut(s)	44, 99, 200, 231, 528, 561
BseNI	ACTGG	5 cut(s)	551, 621, 937, 1015, 1127
BseRI	GAGGAG	5 cut(s)	431, 494, 497, 665, 856
BseXI	GCAGC	4 cut(s)	145, 213, 421, 946
BsgI	GTGCAG	2 cut(s)	420, 858
Bsh1236I	CGCG	2 cut(s)	155, 261
Bsh1285I	CGRYCG	1 cut(s)	1072
BshFI	GGCC	3 cut(s)	94, 620, 1181
BsiEI	CGRYCG	1 cut(s)	1072
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	1182
BslI	CCNNNNNNNGG	2 cut(s)	113, 187
BsmAI	GTCTC	1 cut(s)	659
BsmI	GAATGC	1 cut(s)	1195
BsnI	GGCC	3 cut(s)	94, 620, 1181
BsoBI	CYCGRG	1 cut(s)	167
Bsp143I	GATC	5 cut(s)	217, 277, 364, 1147, 1231
Bsp68I	TCGCGA	1 cut(s)	261
BspACI	CCGC	3 cut(s)	153, 155, 292
BspANI	GGCC	3 cut(s)	94, 620, 1181
BspCNI	CTCAG	6 cut(s)	45, 100, 199, 232, 527, 562
BspFNI	CGCG	2 cut(s)	155, 261
BspLI	GGNNCC	2 cut(s)	366, 1094
BspMAI	CTGCAG	1 cut(s)	16
BspMI	ACCTGC	2 cut(s)	5, 880
BspPI	GGATC	5 cut(s)	212, 359, 372, 1142, 1239
BsrDI	GCAATG	1 cut(s)	738
BsrI	ACTGG	5 cut(s)	551, 621, 937, 1015, 1127
BssECI	CCNNGG	4 cut(s)	153, 221, 564, 1133
BssMI	GATC	5 cut(s)	217, 277, 364, 1147, 1231
BssSI	CACGAG	1 cut(s)	990
BssT1I	CCWWGG	2 cut(s)	221, 564
Bst2BI	CACGAG	1 cut(s)	990
Bst2UI	CCWGG	2 cut(s)	96, 331
Bst4CI	ACNGT	2 cut(s)	31, 967
BstDEI	CTNAG	6 cut(s)	53, 108, 186, 240, 514, 570
BstDSI	CCRYGG	2 cut(s)	153, 1133
BstF5I	GGATG	2 cut(s)	706, 736
BstFNI	CGCG	2 cut(s)	155, 261
BstKTI	GATC	5 cut(s)	220, 280, 367, 1150, 1234
BstMAI	GTCTC	1 cut(s)	659
BstMBI	GATC	5 cut(s)	217, 277, 364, 1147, 1231
BstMCI	CGRYCG	1 cut(s)	1072
BstMWI	GCNNNNNNNGC	4 cut(s)	740, 782, 1060, 1178
BstNI	CCWGG	2 cut(s)	96, 331
BstSCI	CCNGG	2 cut(s)	94, 329
BstSFI	CTRYAG	2 cut(s)	12, 1197
BstUI	CGCG	2 cut(s)	155, 261
BstV1I	GCAGC	4 cut(s)	145, 213, 421, 946
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuI	GTATCC	2 cut(s)	299, 1105
BsuRI	GGCC	3 cut(s)	94, 620, 1181
BtgI	CCRYGG	2 cut(s)	153, 1133
BtgZI	GCGATG	2 cut(s)	568, 800
BtsCI	GGATG	2 cut(s)	706, 736
BtsIMutI	CAGTG	1 cut(s)	27
BtuMI	TCGCGA	1 cut(s)	261
BveI	ACCTGC	2 cut(s)	5, 880
Cfr13I	GGNCC	2 cut(s)	1092, 1137
Cfr42I	CCGCGG	1 cut(s)	156
CseI	GACGC	2 cut(s)	218, 953
Csp6I	GTAC	1 cut(s)	913
CviAII	CATG	4 cut(s)	527, 904, 956, 1051
CviQI	GTAC	1 cut(s)	913
DdeI	CTNAG	6 cut(s)	53, 108, 186, 240, 514, 570
DpnI	GATC	5 cut(s)	219, 279, 366, 1149, 1233
DpnII	GATC	5 cut(s)	217, 277, 364, 1147, 1231
EaeI	YGGCCR	1 cut(s)	1179
EciI	GGCGGA	1 cut(s)	281
Eco130I	CCWWGG	2 cut(s)	221, 564
Eco47I	GGWCC	2 cut(s)	1092, 1137
Eco88I	CYCGRG	1 cut(s)	167
EcoRII	CCWGG	2 cut(s)	94, 329
EcoT14I	CCWWGG	2 cut(s)	221, 564
ErhI	CCWWGG	2 cut(s)	221, 564
FaeI	CATG	4 cut(s)	530, 907, 959, 1054
FalI	AAGNNNNNCTT	2 cut(s)	539, 571
FatI	CATG	4 cut(s)	526, 903, 955, 1050
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	5 cut(s)	156, 159, 227, 435, 960
FokI	GGATG	2 cut(s)	713, 743
Fsp4HI	GCNGC	5 cut(s)	156, 159, 227, 435, 960
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	5 cut(s)	156, 159, 227, 435, 960
GsuI	CTGGAG	1 cut(s)	1032
HaeIII	GGCC	3 cut(s)	94, 620, 1181
HapII	CCGG	1 cut(s)	1182
HgaI	GACGC	2 cut(s)	218, 953
Hin1II	CATG	4 cut(s)	530, 907, 959, 1054
HinfI	GANTC	3 cut(s)	494, 512, 862
HpaII	CCGG	1 cut(s)	1182
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	1137
Hpy188I	TCNGA	6 cut(s)	199, 451, 499, 517, 695, 943
Hpy188III	TCNNGA	7 cut(s)	107, 169, 188, 260, 368, 992, 1235
Hpy8I	GTNNAC	1 cut(s)	1137
Hpy99I	CGWCG	3 cut(s)	131, 234, 266
HpyAV	CCTTC	7 cut(s)	187, 335, 387, 787, 1039, 1074, 1222
HpyCH4III	ACNGT	2 cut(s)	31, 967
HpyCH4IV	ACGT	1 cut(s)	592
HpyCH4V	TGCA	9 cut(s)	14, 206, 437, 875, 907, 962, 1054, 1172, 1193
HpyF10VI	GCNNNNNNNGC	4 cut(s)	740, 782, 1060, 1178
HpyF3I	CTNAG	6 cut(s)	53, 108, 186, 240, 514, 570
HpySE526I	ACGT	1 cut(s)	592
Hsp92II	CATG	4 cut(s)	530, 907, 959, 1054
Ksp22I	TGATCA	1 cut(s)	277
KspI	CCGCGG	1 cut(s)	156
Kzo9I	GATC	5 cut(s)	217, 277, 364, 1147, 1231
LmnI	GCTCC	3 cut(s)	109, 421, 1009
Lsp1109I	GCAGC	4 cut(s)	145, 213, 421, 946
LweI	GCATC	5 cut(s)	112, 340, 361, 531, 721
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	1 cut(s)	592
MaeIII	GTNAC	2 cut(s)	7, 23
MalI	GATC	5 cut(s)	219, 279, 366, 1149, 1233
MboI	GATC	5 cut(s)	217, 277, 364, 1147, 1231
MflI	RGATCY	1 cut(s)	364
MluCI	AATT	6 cut(s)	63, 303, 600, 644, 981, 1223
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	1 cut(s)	1031
MroXI	GAANNNNTTC	1 cut(s)	176
MseI	TTAA	3 cut(s)	81, 399, 768
MslI	CAYNNNNRTG	1 cut(s)	924
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	1 cut(s)	1182
MspR9I	CCNGG	2 cut(s)	96, 331
Mva1269I	GAATGC	1 cut(s)	1195
MvaI	CCWGG	2 cut(s)	96, 331
MvnI	CGCG	2 cut(s)	155, 261
MwoI	GCNNNNNNNGC	4 cut(s)	740, 782, 1060, 1178
NdeII	GATC	5 cut(s)	217, 277, 364, 1147, 1231
NlaIII	CATG	4 cut(s)	530, 907, 959, 1054
NlaIV	GGNNCC	2 cut(s)	366, 1094
NmuCI	GTSAC	2 cut(s)	7, 23
NruI	TCGCGA	1 cut(s)	261
OliI	CACNNNNGTG	1 cut(s)	924
PaeR7I	CTCGAG	1 cut(s)	167
PaqCI	CACCTGC	1 cut(s)	5
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PctI	GAATGC	1 cut(s)	1195
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	494, 862
PkrI	GCNGC	5 cut(s)	157, 160, 228, 436, 961
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
Psp6I	CCWGG	2 cut(s)	94, 329
PspGI	CCWGG	2 cut(s)	94, 329
PspN4I	GGNNCC	2 cut(s)	366, 1094
PspPI	GGNCC	2 cut(s)	1092, 1137
PstI	CTGCAG	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	364
RruI	TCGCGA	1 cut(s)	261
RsaI	GTAC	1 cut(s)	914
RsaNI	GTAC	1 cut(s)	913
RseI	CAYNNNNRTG	1 cut(s)	924
SacII	CCGCGG	1 cut(s)	156
SaqAI	TTAA	3 cut(s)	81, 399, 768
SatI	GCNGC	5 cut(s)	156, 159, 227, 435, 960
Sau3AI	GATC	5 cut(s)	217, 277, 364, 1147, 1231
Sau96I	GGNCC	2 cut(s)	1092, 1137
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	2 cut(s)	96, 331
SfaNI	GCATC	5 cut(s)	112, 340, 361, 531, 721
SfcI	CTRYAG	2 cut(s)	12, 1197
Sfr274I	CTCGAG	1 cut(s)	167
Sfr303I	CCGCGG	1 cut(s)	156
SgrBI	CCGCGG	1 cut(s)	156
SinI	GGWCC	2 cut(s)	1092, 1137
SlaI	CTCGAG	1 cut(s)	167
SmiMI	CAYNNNNRTG	1 cut(s)	924
SmlI	CTYRAG	2 cut(s)	167, 545
SmoI	CTYRAG	2 cut(s)	167, 545
Sse9I	AATT	6 cut(s)	63, 303, 600, 644, 981, 1223
SsiI	CCGC	3 cut(s)	153, 155, 292
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	94, 329
StyI	CCWWGG	2 cut(s)	221, 564
TaaI	ACNGT	2 cut(s)	31, 967
TaiI	ACGT	1 cut(s)	595
TaqI	TCGA	2 cut(s)	168, 1072
TaqII	GACCGA	1 cut(s)	1058
TasI	AATT	6 cut(s)	63, 303, 600, 644, 981, 1223
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	2 cut(s)	494, 862
Tru1I	TTAA	3 cut(s)	81, 399, 768
Tru9I	TTAA	3 cut(s)	81, 399, 768
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	2 cut(s)	7, 23
TseI	GCWGC	4 cut(s)	158, 226, 434, 959
Tsp45I	GTSAC	2 cut(s)	7, 23
TspDTI	ATGAA	5 cut(s)	537, 717, 777, 892, 1202
TspGWI	ACGGA	1 cut(s)	1122
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	2 cut(s)	1092, 1137
XapI	RAATTY	1 cut(s)	981
XcmI	CCANNNNNNNNNTGG	1 cut(s)	891
XhoI	CTCGAG	1 cut(s)	167
XmaJI	CCTAGG	1 cut(s)	221
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.