Rmu_sc0008874.1_g000008

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008874.1
OG0015903
Physical Location & Seq
Forward (+)
45104 .. 48264
3161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008874.1_g000008.1.cds

Sequence Viewer

Length: 951 bp
atgaatgtgagccacgggtcggttcacccggttgaagatgcccccaccacagacggcgccgccggcccaaacccgccccgggtccgaatgaaggacctccccggcatgcccggcactcccgccggcctcgccttgcgcctttcccagttcctcttctccgccgccgctctcgccgtcatggcctccacctctgacttcccttccgtcaccgctttctgctacctagttgccgctaccgggttgcagactttgtggagcttctcactggccattgctgacgcctatgcccttctagtggggcgttctttgcagagccataaagttgtctgcttgttcactctcggcgatgggatgacatccactcttactttcgcggcagcttgtgcttctgctgggatcacagttcttattgacaatgatcttgacagttgtgcccataaccattgtgcacaatttgaaacagctacggccatggcttttataacctgtgttccatcagtaaggtatgctatgaagggatccatccaagaagattgtcttggtggttcaactatgaagattttagagaaggcctcagagatgcttggtttgtcgattgtttcaaccttcgtgttgcttgtatcggtaccgggagtagtggctagtcttgctatagcgtctgcccttgcattttcagctttgttaccaaacctcagcgggagcaggtgccagggcaagcgccgggttcgctactacttgatgctcggctccttcaagtggaatgaactcggcttttgtaagatttgtttcaggggttggtctgtgagaacatggacaatatgggtctgtgagaacatggacaatatgggcccagaagtatgggcgaaagcgtctcctcgagatgatcagtgccaaggcaagcttcttaatgttgggttaccgggtctcgacatcagtaaatcccttgcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

316

Amino Acids

33.5

Weight (kDa)

7.49

Isoelectric Point (pI)

34.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015903)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28370
fragaria_vesca FvH4_3g32060
malus_domestica MD03G1119100.v1.1 MD11G1136900.v1.1
prunus_persica Prupe.6G102400_v2.0.a1
pyrus_communis pycom11g11350
rosa_chinensis RchiOBHm_Chr5g0058781
rosa_laevigata RLG00000035248
rosa_multiflora Rmu_sc0008874.1_g000008
rosa_roxburghii Rroxscaffold_1G00021620
rosa_rugosa Rorug05G0319100
rosa_samantha Rh5AG383800 Rh5CG419600 Rh5DG411400
rosa_wichuraiana Rw5G036170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 482
AarI CACCTGC 1 cut(s) 693
Acc36I ACCTGC 1 cut(s) 693
Acc65I GGTACC 1 cut(s) 625
AccB1I GGYRCC 3 cut(s) 56, 625, 705
AccBSI CCGCTC 1 cut(s) 167
AccII CGCG 1 cut(s) 374
AclWI GGATC 3 cut(s) 404, 513, 526
AcoI YGGCCR 2 cut(s) 267, 468
AcyI GRCGYC 2 cut(s) 57, 279
AfaI GTAC 1 cut(s) 627
AfiI CCNNNNNNNGG 6 cut(s) 19, 79, 91, 237, 295, 756
AgsI TTSAA 5 cut(s) 35, 458, 549, 603, 754
AjnI CCWGG 1 cut(s) 708
AjuI GAANNNNNNNTTGG 4 cut(s) 522, 554, 885, 917
AluBI AGCT 5 cut(s) 258, 380, 464, 677, 901
AluI AGCT 5 cut(s) 258, 380, 464, 677, 901
Alw21I GWGCWC 1 cut(s) 451
Alw26I GTCTC 2 cut(s) 876, 929
Alw44I GTGCAC 1 cut(s) 447
AlwI GGATC 3 cut(s) 404, 513, 526
Ama87I CYCGRG 2 cut(s) 78, 876
AoxI GGCC 7 cut(s) 64, 124, 180, 267, 468, 570, 847
ApaI GGGCCC 1 cut(s) 851
ApaLI GTGCAC 1 cut(s) 447
ApeKI GCWGC 1 cut(s) 377
Asp718I GGTACC 1 cut(s) 625
AspLEI GCGC 3 cut(s) 59, 138, 720
AspS9I GGNCC 5 cut(s) 65, 82, 94, 847, 848
AsuC2I CCSGG 9 cut(s) 29, 79, 80, 102, 111, 238, 630, 722, 921
AsuHPI GGTGA 2 cut(s) 17, 199
AvaI CYCGRG 2 cut(s) 78, 876
AvaII GGWCC 2 cut(s) 82, 94
BaeGI GKGCMC 3 cut(s) 436, 451, 851
BalI TGGCCA 1 cut(s) 269
BamHI GGATCC 1 cut(s) 518
BanI GGYRCC 3 cut(s) 56, 625, 705
BanII GRGCYC 1 cut(s) 851
Bbv12I GWGCWC 1 cut(s) 451
BbvCI CCTCAGC 1 cut(s) 692
BbvI GCAGC 1 cut(s) 389
BccI CCATC 3 cut(s) 341, 502, 530
BceAI ACGGC 3 cut(s) 70, 158, 483
BciT130I CCWGG 1 cut(s) 710
BclI TGATCA 1 cut(s) 883
BcnI CCSGG 9 cut(s) 29, 79, 80, 102, 111, 238, 630, 722, 921
BcoDI GTCTC 2 cut(s) 876, 929
BfaI CTAG 3 cut(s) 224, 293, 642
BfmI CTRYAG 1 cut(s) 651
BfoI RGCGCY 2 cut(s) 60, 721
BfuAI ACCTGC 1 cut(s) 693
BglI GCCNNNNNGGC 1 cut(s) 179
BisI GCNGC 6 cut(s) 60, 162, 165, 231, 375, 378
BlsI GCNGC 6 cut(s) 61, 163, 166, 232, 376, 379
Bme18I GGWCC 2 cut(s) 82, 94
BmeT110I CYCGRG 2 cut(s) 78, 876
BmgT120I GGNCC 5 cut(s) 65, 82, 94, 847, 848
BmiI GGNNCC 7 cut(s) 58, 83, 520, 627, 707, 748, 849
BmrI ACTGGG 1 cut(s) 139
BmsI GCATC 3 cut(s) 28, 570, 729
BmuI ACTGGG 1 cut(s) 139
BplI GAGNNNNNCTC 2 cut(s) 557, 589
Bpu10I CCTNAGC 1 cut(s) 692
BpuMI CCSGG 9 cut(s) 29, 79, 80, 102, 111, 238, 630, 722, 921
BsaHI GRCGYC 2 cut(s) 57, 279
BsaI GGTCTC 1 cut(s) 929
BsaJI CCNNGG 7 cut(s) 13, 77, 78, 100, 471, 709, 892
Bsc4I CCNNNNNNNGG 6 cut(s) 19, 79, 91, 237, 295, 756
Bse118I RCCGGY 2 cut(s) 62, 122
Bse1I ACTGG 2 cut(s) 145, 270
Bse3DI GCAATG 1 cut(s) 270
BseBI CCWGG 1 cut(s) 710
BseDI CCNNGG 7 cut(s) 13, 77, 78, 100, 471, 709, 892
BseGI GGATG 3 cut(s) 356, 357, 522
BseLI CCNNNNNNNGG 6 cut(s) 19, 79, 91, 237, 295, 756
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 2 cut(s) 588, 706
BseNI ACTGG 2 cut(s) 145, 270
BseRI GAGGAG 1 cut(s) 864
BseSI GKGCMC 3 cut(s) 436, 451, 851
BseXI GCAGC 1 cut(s) 389
BseYI CCCAGC 1 cut(s) 392
Bsh1236I CGCG 1 cut(s) 374
BshFI GGCC 7 cut(s) 66, 126, 182, 269, 470, 572, 849
BshNI GGYRCC 3 cut(s) 56, 625, 705
BsiHKAI GWGCWC 1 cut(s) 451
BsiHKCI CYCGRG 2 cut(s) 78, 876
BslI CCNNNNNNNGG 6 cut(s) 19, 79, 91, 237, 295, 756
BsmAI GTCTC 2 cut(s) 876, 929
BsmBI CGTCTC 1 cut(s) 876
BsnI GGCC 7 cut(s) 66, 126, 182, 269, 470, 572, 849
Bso31I GGTCTC 1 cut(s) 929
BsoBI CYCGRG 2 cut(s) 78, 876
Bsp120I GGGCCC 1 cut(s) 847
Bsp1286I GDGCHC 3 cut(s) 436, 451, 851
Bsp143I GATC 4 cut(s) 396, 418, 518, 883
Bsp19I CCATGG 1 cut(s) 471
BspANI GGCC 7 cut(s) 66, 126, 182, 269, 470, 572, 849
BspCNI CTCAG 2 cut(s) 587, 705
BspFNI CGCG 1 cut(s) 374
BspLI GGNNCC 7 cut(s) 58, 83, 520, 627, 707, 748, 849
BspMI ACCTGC 1 cut(s) 693
BspPI GGATC 3 cut(s) 404, 513, 526
BspT107I GGYRCC 3 cut(s) 56, 625, 705
BspTNI GGTCTC 1 cut(s) 929
BsrBI CCGCTC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 270
BsrFI RCCGGY 2 cut(s) 62, 122
BsrI ACTGG 2 cut(s) 145, 270
BssAI RCCGGY 2 cut(s) 62, 122
BssECI CCNNGG 7 cut(s) 13, 77, 78, 100, 471, 709, 892
BssMI GATC 4 cut(s) 396, 418, 518, 883
BssNI GRCGYC 2 cut(s) 57, 279
BssT1I CCWWGG 2 cut(s) 471, 892
Bst2UI CCWGG 1 cut(s) 710
Bst4CI ACNGT 2 cut(s) 403, 428
Bst6I CTCTTC 1 cut(s) 158
BstACI GRCGYC 2 cut(s) 57, 279
BstAPI GCANNNNNTGC 1 cut(s) 383
BstC8I GCNNGC 5 cut(s) 64, 107, 124, 716, 899
BstDEI CTNAG 2 cut(s) 574, 692
BstDSI CCRYGG 2 cut(s) 13, 471
BstEII GGTNACC 1 cut(s) 915
BstF5I GGATG 3 cut(s) 356, 357, 522
BstFNI CGCG 1 cut(s) 374
BstH2I RGCGCY 2 cut(s) 60, 721
BstHHI GCGC 3 cut(s) 59, 138, 720
BstKTI GATC 4 cut(s) 399, 421, 521, 886
BstMAI GTCTC 2 cut(s) 876, 929
BstMBI GATC 4 cut(s) 396, 418, 518, 883
BstNI CCWGG 1 cut(s) 710
BstNSI RCATGY 1 cut(s) 109
BstPI GGTNACC 1 cut(s) 915
BstSFI CTRYAG 1 cut(s) 651
BstSLI GKGCMC 3 cut(s) 436, 451, 851
BstUI CGCG 1 cut(s) 374
BstV1I GCAGC 1 cut(s) 389
BstX2I RGATCY 1 cut(s) 518
BstXI CCANNNNNNTGG 1 cut(s) 858
BstYI RGATCY 1 cut(s) 518
BsuRI GGCC 7 cut(s) 66, 126, 182, 269, 470, 572, 849
BtgI CCRYGG 2 cut(s) 13, 471
BtgZI GCGATG 1 cut(s) 360
BtsCI GGATG 3 cut(s) 356, 357, 522
BtsIMutI CAGTG 2 cut(s) 263, 893
BveI ACCTGC 1 cut(s) 693
Cac8I GCNNGC 5 cut(s) 64, 107, 124, 716, 899
CfoI GCGC 3 cut(s) 59, 138, 720
Cfr10I RCCGGY 2 cut(s) 62, 122
Cfr13I GGNCC 5 cut(s) 65, 82, 94, 847, 848
Cfr9I CCCGGG 1 cut(s) 78
CseI GACGC 3 cut(s) 287, 645, 858
Csp6I GTAC 1 cut(s) 626
CviAII CATG 5 cut(s) 106, 178, 472, 810, 835
CviQI GTAC 1 cut(s) 626
DdeI CTNAG 2 cut(s) 574, 692
DinI GGCGCC 1 cut(s) 58
DpnI GATC 4 cut(s) 398, 420, 520, 885
DpnII GATC 4 cut(s) 396, 418, 518, 883
EaeI YGGCCR 2 cut(s) 267, 468
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
EciI GGCGGA 1 cut(s) 148
Eco130I CCWWGG 2 cut(s) 471, 892
Eco147I AGGCCT 1 cut(s) 572
Eco24I GRGCYC 1 cut(s) 851
Eco31I GGTCTC 1 cut(s) 929
Eco47I GGWCC 2 cut(s) 82, 94
Eco88I CYCGRG 2 cut(s) 78, 876
Eco91I GGTNACC 1 cut(s) 915
EcoO109I RGGNCCY 1 cut(s) 94
EcoO65I GGTNACC 1 cut(s) 915
EcoRII CCWGG 1 cut(s) 708
EcoT14I CCWWGG 2 cut(s) 471, 892
EcoT38I GRGCYC 1 cut(s) 851
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
ErhI CCWWGG 2 cut(s) 471, 892
Esp3I CGTCTC 1 cut(s) 876
FaeI CATG 5 cut(s) 109, 181, 475, 813, 838
FalI AAGNNNNNCTT 4 cut(s) 522, 554, 885, 917
FatI CATG 5 cut(s) 105, 177, 471, 809, 834
FauI CCCGC 3 cut(s) 81, 127, 689
FbaI TGATCA 1 cut(s) 883
Fnu4HI GCNGC 6 cut(s) 60, 162, 165, 231, 375, 378
FokI GGATG 3 cut(s) 343, 364, 509
FriOI GRGCYC 1 cut(s) 851
Fsp4HI GCNGC 6 cut(s) 60, 162, 165, 231, 375, 378
FspBI CTAG 3 cut(s) 224, 293, 642
GlaI GCGC 3 cut(s) 58, 137, 719
GluI GCNGC 6 cut(s) 60, 162, 165, 231, 375, 378
GsaI CCCAGC 1 cut(s) 396
HaeII RGCGCY 2 cut(s) 60, 721
HaeIII GGCC 7 cut(s) 66, 126, 182, 269, 470, 572, 849
HgaI GACGC 3 cut(s) 287, 645, 858
HhaI GCGC 3 cut(s) 59, 138, 720
Hin1I GRCGYC 2 cut(s) 57, 279
Hin1II CATG 5 cut(s) 109, 181, 475, 813, 838
Hin6I GCGC 3 cut(s) 57, 136, 718
HinP1I GCGC 3 cut(s) 57, 136, 718
HindIII AAGCTT 1 cut(s) 899
HphI GGTGA 2 cut(s) 17, 199
Hpy166II GTNNAC 3 cut(s) 25, 336, 449
Hpy188I TCNGA 3 cut(s) 86, 193, 577
Hpy188III TCNNGA 3 cut(s) 422, 878, 926
Hpy8I GTNNAC 3 cut(s) 25, 336, 449
HpyAV CCTTC 7 cut(s) 85, 210, 299, 508, 562, 616, 760
HpyCH4III ACNGT 2 cut(s) 403, 428
HpyCH4V TGCA 4 cut(s) 244, 310, 449, 668
HpyF3I CTNAG 2 cut(s) 574, 692
Hsp92I GRCGYC 2 cut(s) 57, 279
Hsp92II CATG 5 cut(s) 109, 181, 475, 813, 838
HspAI GCGC 3 cut(s) 57, 136, 718
KasI GGCGCC 1 cut(s) 56
KpnI GGTACC 1 cut(s) 629
KroI GCCGGC 2 cut(s) 62, 122
KroNI GCCGGC 2 cut(s) 64, 124
Ksp22I TGATCA 1 cut(s) 883
Kzo9I GATC 4 cut(s) 396, 418, 518, 883
LmnI GCTCC 3 cut(s) 255, 699, 752
Lsp1109I GCAGC 1 cut(s) 389
LweI GCATC 3 cut(s) 28, 570, 729
MaeI CTAG 3 cut(s) 224, 293, 642
MaeIII GTNAC 3 cut(s) 205, 681, 915
MalI GATC 4 cut(s) 398, 420, 520, 885
MbiI CCGCTC 1 cut(s) 167
MboI GATC 4 cut(s) 396, 418, 518, 883
MboII GAAGA 4 cut(s) 47, 145, 542, 568
MflI RGATCY 1 cut(s) 518
MhlI GDGCHC 3 cut(s) 436, 451, 851
MlsI TGGCCA 1 cut(s) 269
MluCI AATT 1 cut(s) 452
MluNI TGGCCA 1 cut(s) 269
Mly113I GGCGCC 1 cut(s) 57
MnlI CCTC 8 cut(s) 107, 137, 161, 193, 199, 583, 701, 885
Mox20I TGGCCA 1 cut(s) 269
MroNI GCCGGC 2 cut(s) 62, 122
MscI TGGCCA 1 cut(s) 269
MseI TTAA 1 cut(s) 906
Msp20I TGGCCA 1 cut(s) 269
MspA1I CMGCKG 1 cut(s) 696
MvaI CCWGG 1 cut(s) 710
MvnI CGCG 1 cut(s) 374
NaeI GCCGGC 2 cut(s) 64, 124
NarI GGCGCC 1 cut(s) 57
NciI CCSGG 9 cut(s) 29, 79, 80, 102, 111, 238, 630, 722, 921
NcoI CCATGG 1 cut(s) 471
NdeII GATC 4 cut(s) 396, 418, 518, 883
NgoMIV GCCGGC 2 cut(s) 62, 122
NlaIII CATG 5 cut(s) 109, 181, 475, 813, 838
NlaIV GGNNCC 7 cut(s) 58, 83, 520, 627, 707, 748, 849
NmeAIII GCCGAG 3 cut(s) 321, 723, 747
NmuCI GTSAC 1 cut(s) 205
NspI RCATGY 1 cut(s) 109
PaeI GCATGC 1 cut(s) 109
PaeR7I CTCGAG 1 cut(s) 876
PaqCI CACCTGC 1 cut(s) 693
PceI AGGCCT 1 cut(s) 572
PdiI GCCGGC 2 cut(s) 64, 124
PkrI GCNGC 6 cut(s) 61, 163, 166, 232, 376, 379
PluTI GGCGCC 1 cut(s) 60
PpuMI RGGWCCY 1 cut(s) 94
PsiI TTATAA 1 cut(s) 482
Psp5II RGGWCCY 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 708
PspEI GGTNACC 1 cut(s) 915
PspFI CCCAGC 1 cut(s) 392
PspGI CCWGG 1 cut(s) 708
PspN4I GGNNCC 7 cut(s) 58, 83, 520, 627, 707, 748, 849
PspOMI GGGCCC 1 cut(s) 847
PspPI GGNCC 5 cut(s) 65, 82, 94, 847, 848
PspPPI RGGWCCY 1 cut(s) 94
PsuI RGATCY 1 cut(s) 518
RsaI GTAC 1 cut(s) 627
RsaNI GTAC 1 cut(s) 626
SaqAI TTAA 1 cut(s) 906
SatI GCNGC 6 cut(s) 60, 162, 165, 231, 375, 378
Sau3AI GATC 4 cut(s) 396, 418, 518, 883
Sau96I GGNCC 5 cut(s) 65, 82, 94, 847, 848
SduI GDGCHC 3 cut(s) 436, 451, 851
SfaNI GCATC 3 cut(s) 28, 570, 729
SfcI CTRYAG 1 cut(s) 651
SfoI GGCGCC 1 cut(s) 58
Sfr274I CTCGAG 1 cut(s) 876
SinI GGWCC 2 cut(s) 82, 94
SlaI CTCGAG 1 cut(s) 876
SmaI CCCGGG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 876
SmoI CTYRAG 1 cut(s) 876
SphI GCATGC 1 cut(s) 109
Sse9I AATT 1 cut(s) 452
SseBI AGGCCT 1 cut(s) 572
SspDI GGCGCC 1 cut(s) 56
SspMI CTAG 3 cut(s) 224, 293, 642
StuI AGGCCT 1 cut(s) 572
StyI CCWWGG 2 cut(s) 471, 892
TaaI ACNGT 2 cut(s) 403, 428
TaqI TCGA 3 cut(s) 593, 877, 927
TasI AATT 1 cut(s) 452
TauI GCSGC 5 cut(s) 62, 164, 167, 233, 377
Tru1I TTAA 1 cut(s) 906
Tru9I TTAA 1 cut(s) 906
TscAI CASTG 2 cut(s) 270, 893
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 5 cut(s) 17, 104, 527, 569, 777
TspGWI ACGGA 1 cut(s) 193
TspMI CCCGGG 1 cut(s) 78
TspRI CASTG 2 cut(s) 270, 893
VneI GTGCAC 1 cut(s) 447
VpaK11BI GGWCC 2 cut(s) 82, 94
XceI RCATGY 1 cut(s) 109
XhoI CTCGAG 1 cut(s) 876
XmaI CCCGGG 1 cut(s) 78
XspI CTAG 3 cut(s) 224, 293, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.