Rorug05G0319100

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0015903
Physical Location & Seq
Forward (+)
37835600 .. 37835871
272 bp
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UTR
Exon/CDS
Intron
Rorug05G0319100.1

Sequence Viewer

Length: 252 bp
ATGACTTGGTTGGAAGAGTTTCAGATGTCGAACACCATTAATGTAGCATGGAAGCAAAGAATCACACATATATGGCAACCTACATGCGAGAACGAGTTCAAGCTCAACATAGATGGAGCATTTATACCACAGCTAACAAGAGGTGGGATTGGAGGTGTACTTCGAAACTCTAATGGAGTGGCGGTTGCTGTATTTCAATCTGTTGTCCAGTTGGTCAGTTCAGCGATGCATGTGGAGATACTTGCTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

83

Amino Acids

9.26

Weight (kDa)

6.02

Isoelectric Point (pI)

53.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 36 - 83 5.3e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015903)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28370
fragaria_vesca FvH4_3g32060
malus_domestica MD03G1119100.v1.1 MD11G1136900.v1.1
prunus_persica Prupe.6G102400_v2.0.a1
pyrus_communis pycom11g11350
rosa_chinensis RchiOBHm_Chr5g0058781
rosa_laevigata RLG00000035248
rosa_multiflora Rmu_sc0008874.1_g000008
rosa_roxburghii Rroxscaffold_1G00021620
rosa_rugosa Rorug05G0319100
rosa_samantha Rh5AG383800 Rh5CG419600 Rh5DG411400
rosa_wichuraiana Rw5G036170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 182
AfaI GTAC 1 cut(s) 159
AgsI TTSAA 2 cut(s) 100, 197
AluBI AGCT 2 cut(s) 103, 133
AluI AGCT 2 cut(s) 103, 133
AseI ATTAAT 1 cut(s) 39
Asp700I GAANNNNTTC 2 cut(s) 18, 95
AsuII TTCGAA 1 cut(s) 163
BccI CCATC 1 cut(s) 107
BmsI GCATC 1 cut(s) 216
Bpu14I TTCGAA 1 cut(s) 163
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bse1I ACTGG 1 cut(s) 208
BseNI ACTGG 1 cut(s) 208
Bsp119I TTCGAA 1 cut(s) 163
BspACI CCGC 1 cut(s) 182
BspT104I TTCGAA 1 cut(s) 163
BsrI ACTGG 1 cut(s) 208
Bst6I CTCTTC 1 cut(s) 9
BstBI TTCGAA 1 cut(s) 163
BstNSI RCATGY 2 cut(s) 87, 233
BtgZI GCGATG 1 cut(s) 239
Csp6I GTAC 1 cut(s) 158
CviAII CATG 3 cut(s) 48, 84, 230
CviJI RGCY 2 cut(s) 103, 133
CviKI_1 RGCY 2 cut(s) 103, 133
CviQI GTAC 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
EcoT22I ATGCAT 1 cut(s) 231
FaeI CATG 3 cut(s) 51, 87, 233
FatI CATG 3 cut(s) 47, 83, 229
Hin1II CATG 3 cut(s) 51, 87, 233
HinfI GANTC 1 cut(s) 60
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 1 cut(s) 24
Hpy8I GTNNAC 1 cut(s) 158
HpyCH4V TGCA 1 cut(s) 229
Hsp92II CATG 3 cut(s) 51, 87, 233
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 1 cut(s) 221
LweI GCATC 1 cut(s) 216
MboII GAAGA 1 cut(s) 26
MnlI CCTC 2 cut(s) 134, 146
Mph1103I ATGCAT 1 cut(s) 231
MroXI GAANNNNTTC 2 cut(s) 18, 95
MseI TTAA 1 cut(s) 39
MslI CAYNNNNRTG 1 cut(s) 70
NlaIII CATG 3 cut(s) 51, 87, 233
NsiI ATGCAT 1 cut(s) 231
NspI RCATGY 2 cut(s) 87, 233
NspV TTCGAA 1 cut(s) 163
PdmI GAANNNNTTC 2 cut(s) 18, 95
PfeI GAWTC 1 cut(s) 60
PshBI ATTAAT 1 cut(s) 39
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
RseI CAYNNNNRTG 1 cut(s) 70
SaqAI TTAA 1 cut(s) 39
SetI ASST 5 cut(s) 82, 105, 135, 145, 157
SfaNI GCATC 1 cut(s) 216
SfuI TTCGAA 1 cut(s) 163
SgeI CNNG 9 cut(s) 18, 60, 96, 100, 106, 112, 150, 220, 242
SmiMI CAYNNNNRTG 1 cut(s) 70
SsiI CCGC 1 cut(s) 182
TaqI TCGA 2 cut(s) 29, 163
TatI WGTACW 1 cut(s) 157
TfiI GAWTC 1 cut(s) 60
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
VspI ATTAAT 1 cut(s) 39
XceI RCATGY 2 cut(s) 87, 233
XmnI GAANNNNTTC 2 cut(s) 18, 95
Zsp2I ATGCAT 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.