Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009248.1

Orthogroup ID

OG0018132

Physical Location & Seq

Genomic Coordinates Forward (+)

63802 .. 69269

Gene Structure 5468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009248.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

atgggtttttctgggtttaagagactggaaggtcctagtatcctcgcgagccgactgtcagcctcaccagatcaacccggccaccgtacttccagtcccagtctcctcacgagccgactgccaataccactgccaccgatacacccagcgaagcaagggcaaaagtcctttcccaaaaggcaagagaagaaccctgtgacgaggttggtgttctcctcgtccacagcgcttgaagaagaagtcaggtcaagggactaccccaacgactgcaccccgcggtttgctcagccatggaatctgggttctggacctttgtggacatggccagtggacggtttgggattgactgctatggtggtggtggtgtatgatattgaaagctcatttgctaagatgtttcagttagccaccaattccaaaactcttctctcttgctgtataccagaggagggtacttatggacctcttgtttcagccatcagtgctacacctgaattcaaacctaccgtcagcaacaagctgccaagtagtaagaagaataggactgggcttattgtgggaattgttgttggttgtggagttttaattctggtggtgctgcttttatatattgttcaaggaagaaagaggcacaacactgatgatgactatgatgaagagctgttgggaatagatcttggacctctcactttcattttttctgaactgaaggcagctacaaatgactttagtccagataataagcttggagagggaggatttgggcctgtcttcaaagcgtgccagcaccgcggggtgcagtcgttggggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

270

Amino Acids

29.3

Weight (kDa)

8.56

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018132)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g11110
rosa_chinensis	RchiOBHm_Chr4g0393401
rosa_multiflora	Rmu_sc0004501.1_g000005 Rmu_sc0009248.1_g000015 Rmu_ssc0000054.1_g000002
rosa_roxburghii	Rroxscaffold_3G00221320 Rroxscaffold_3G00267970
rosa_rugosa	Rorug05G0092000
rosa_samantha	Rh1CG252000 Rh3AG320300 Rh5AG483500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	30
AccI	GTMKAC	1 cut(s)	439
AccII	CGCG	3 cut(s)	47, 277, 792
AciI	CCGC	4 cut(s)	275, 277, 790, 792
AcoI	YGGCCR	2 cut(s)	79, 323
AcsI	RAATTY	1 cut(s)	494
AcuI	CTGAAG	1 cut(s)	728
AfaI	GTAC	2 cut(s)	88, 454
AfeI	AGCGCT	1 cut(s)	228
AfiI	CCNNNNNNNGG	2 cut(s)	332, 449
AgsI	TTSAA	5 cut(s)	233, 377, 499, 617, 775
AloI	GAACNNNNNNTCC	2 cut(s)	286, 318
AluBI	AGCT	5 cut(s)	381, 520, 661, 716, 745
AluI	AGCT	5 cut(s)	381, 520, 661, 716, 745
Alw26I	GTCTC	2 cut(s)	16, 107
Aor51HI	AGCGCT	1 cut(s)	228
AoxI	GGCC	3 cut(s)	79, 323, 764
ApeKI	GCWGC	3 cut(s)	520, 598, 713
ApoI	RAATTY	1 cut(s)	494
ArsI	GACNNNNNNTTYG	2 cut(s)	492, 524
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	5 cut(s)	32, 308, 461, 680, 764
AsuC2I	CCSGG	1 cut(s)	78
AsuHPI	GGTGA	1 cut(s)	57
AvaII	GGWCC	4 cut(s)	32, 308, 461, 680
BalI	TGGCCA	1 cut(s)	325
BauI	CACGAG	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	763
BbvI	GCAGC	3 cut(s)	507, 585, 725
BccI	CCATC	1 cut(s)	485
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BciVI	GTATCC	1 cut(s)	50
BcnI	CCSGG	1 cut(s)	78
BcoDI	GTCTC	2 cut(s)	16, 107
BfaI	CTAG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	230
BfuI	GTATCC	1 cut(s)	50
BglII	AGATCT	1 cut(s)	673
BisI	GCNGC	3 cut(s)	521, 599, 714
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	3 cut(s)	522, 600, 715
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	4 cut(s)	32, 308, 461, 680
BmgT120I	GGNCC	5 cut(s)	32, 308, 461, 680, 764
BmrFI	CCNGG	1 cut(s)	78
BmrI	ACTGGG	2 cut(s)	93, 555
BmuI	ACTGGG	2 cut(s)	93, 555
BoxI	GACNNNNGTC	1 cut(s)	729
BpiI	GAAGAC	1 cut(s)	763
Bpu1102I	GCTNAGC	1 cut(s)	285
BpuMI	CCSGG	1 cut(s)	78
BsaJI	CCNNGG	3 cut(s)	275, 290, 790
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 449
Bse1I	ACTGG	5 cut(s)	30, 93, 99, 326, 550
BseDI	CCNNGG	3 cut(s)	275, 290, 790
BseLI	CCNNNNNNNGG	2 cut(s)	332, 449
BseMII	CTCAG	1 cut(s)	299
BseNI	ACTGG	5 cut(s)	30, 93, 99, 326, 550
BseRI	GAGGAG	3 cut(s)	95, 205, 461
BseXI	GCAGC	3 cut(s)	507, 585, 725
BseYI	CCCAGC	1 cut(s)	145
BsgI	GTGCAG	1 cut(s)	253
Bsh1236I	CGCG	3 cut(s)	47, 277, 792
BshFI	GGCC	3 cut(s)	81, 325, 766
BsiSI	CCGG	1 cut(s)	78
BslFI	GGGAC	2 cut(s)	81, 266
BslI	CCNNNNNNNGG	2 cut(s)	332, 449
BsmAI	GTCTC	2 cut(s)	16, 107
BsmFI	GGGAC	2 cut(s)	81, 266
BsnI	GGCC	3 cut(s)	81, 325, 766
Bsp143I	GATC	2 cut(s)	70, 673
Bsp1720I	GCTNAGC	1 cut(s)	285
Bsp19I	CCATGG	1 cut(s)	290
Bsp68I	TCGCGA	1 cut(s)	47
BspACI	CCGC	4 cut(s)	275, 277, 790, 792
BspANI	GGCC	3 cut(s)	81, 325, 766
BspCNI	CTCAG	1 cut(s)	298
BspFNI	CGCG	3 cut(s)	47, 277, 792
BspQI	GCTCTTC	1 cut(s)	651
BsrI	ACTGG	5 cut(s)	30, 93, 99, 326, 550
BssECI	CCNNGG	3 cut(s)	275, 290, 790
BssMI	GATC	2 cut(s)	70, 673
BssNAI	GTATAC	1 cut(s)	440
BssSI	CACGAG	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	290
Bst1107I	GTATAC	1 cut(s)	440
Bst2BI	CACGAG	1 cut(s)	109
Bst4CI	ACNGT	4 cut(s)	57, 86, 335, 508
Bst6I	CTCTTC	2 cut(s)	429, 651
BstC8I	GCNNGC	3 cut(s)	49, 781, 785
BstDEI	CTNAG	2 cut(s)	285, 390
BstDSI	CCRYGG	3 cut(s)	275, 290, 790
BstFNI	CGCG	3 cut(s)	47, 277, 792
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	2 cut(s)	73, 676
BstMAI	GTCTC	2 cut(s)	16, 107
BstMBI	GATC	2 cut(s)	70, 673
BstMWI	GCNNNNNNNGC	2 cut(s)	482, 789
BstPAI	GACNNNNGTC	1 cut(s)	729
BstSCI	CCNGG	1 cut(s)	76
BstUI	CGCG	3 cut(s)	47, 277, 792
BstV1I	GCAGC	3 cut(s)	507, 585, 725
BstV2I	GAAGAC	1 cut(s)	763
BstX2I	RGATCY	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	673
BstZ17I	GTATAC	1 cut(s)	440
BsuI	GTATCC	1 cut(s)	50
BsuRI	GGCC	3 cut(s)	81, 325, 766
BtgI	CCRYGG	3 cut(s)	275, 290, 790
BtsI	GCAGTG	1 cut(s)	128
BtsIMutI	CAGTG	4 cut(s)	128, 333, 487, 636
BtuMI	TCGCGA	1 cut(s)	47
Cac8I	GCNNGC	3 cut(s)	49, 781, 785
CfoI	GCGC	1 cut(s)	229
Cfr13I	GGNCC	5 cut(s)	32, 308, 461, 680, 764
Cfr42I	CCGCGG	2 cut(s)	278, 793
Csp6I	GTAC	2 cut(s)	87, 453
CspCI	CAANNNNNGTGG	2 cut(s)	211, 246
CviAII	CATG	2 cut(s)	291, 321
CviQI	GTAC	2 cut(s)	87, 453
DdeI	CTNAG	2 cut(s)	285, 390
DpnI	GATC	2 cut(s)	72, 675
DpnII	GATC	2 cut(s)	70, 673
DrdI	GACNNNNNNGTC	1 cut(s)	30
DseDI	GACNNNNNNGTC	1 cut(s)	30
EaeI	YGGCCR	2 cut(s)	79, 323
Eam1104I	CTCTTC	2 cut(s)	429, 651
EarI	CTCTTC	2 cut(s)	429, 651
Eco130I	CCWWGG	1 cut(s)	290
Eco47I	GGWCC	4 cut(s)	32, 308, 461, 680
Eco47III	AGCGCT	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	728
EcoO109I	RGGNCCY	1 cut(s)	32
EcoRI	GAATTC	1 cut(s)	494
EcoT14I	CCWWGG	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	290
FaeI	CATG	2 cut(s)	294, 324
FaiI	YATR	9 cut(s)	292, 322, 353, 369, 440, 459, 607, 609, 651
FaqI	GGGAC	2 cut(s)	81, 266
FatI	CATG	2 cut(s)	290, 320
FauI	CCCGC	2 cut(s)	282, 785
FblI	GTMKAC	1 cut(s)	439
Fnu4HI	GCNGC	3 cut(s)	521, 599, 714
Fsp4HI	GCNGC	3 cut(s)	521, 599, 714
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	3 cut(s)	521, 599, 714
GsaI	CCCAGC	1 cut(s)	149
HaeII	RGCGCY	1 cut(s)	230
HaeIII	GGCC	3 cut(s)	81, 325, 766
HapII	CCGG	1 cut(s)	78
HhaI	GCGC	1 cut(s)	229
Hin1II	CATG	2 cut(s)	294, 324
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HindIII	AAGCTT	1 cut(s)	743
HinfI	GANTC	1 cut(s)	295
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	1 cut(s)	57
Hpy166II	GTNNAC	4 cut(s)	222, 318, 331, 440
Hpy188I	TCNGA	1 cut(s)	703
Hpy188III	TCNNGA	4 cut(s)	46, 109, 306, 734
Hpy8I	GTNNAC	4 cut(s)	222, 318, 331, 440
HpyAV	CCTTC	2 cut(s)	23, 703
HpyCH4III	ACNGT	4 cut(s)	57, 86, 335, 508
HpyCH4V	TGCA	2 cut(s)	270, 799
HpyF10VI	GCNNNNNNNGC	2 cut(s)	482, 789
HpyF3I	CTNAG	2 cut(s)	285, 390
Hsp92II	CATG	2 cut(s)	294, 324
HspAI	GCGC	1 cut(s)	227
KspI	CCGCGG	2 cut(s)	278, 793
Kzo9I	GATC	2 cut(s)	70, 673
LguI	GCTCTTC	1 cut(s)	651
Lsp1109I	GCAGC	3 cut(s)	507, 585, 725
MaeI	CTAG	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	2 cut(s)	72, 675
MboI	GATC	2 cut(s)	70, 673
MboII	GAAGA	8 cut(s)	199, 245, 248, 416, 547, 633, 668, 763
MflI	RGATCY	1 cut(s)	673
MlsI	TGGCCA	1 cut(s)	325
MluCI	AATT	4 cut(s)	412, 494, 561, 585
MluNI	TGGCCA	1 cut(s)	325
Mox20I	TGGCCA	1 cut(s)	325
MscI	TGGCCA	1 cut(s)	325
MseI	TTAA	2 cut(s)	18, 584
Msp20I	TGGCCA	1 cut(s)	325
MspA1I	CMGCKG	2 cut(s)	277, 792
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	1 cut(s)	78
MvnI	CGCG	3 cut(s)	47, 277, 792
MwoI	GCNNNNNNNGC	2 cut(s)	482, 789
NciI	CCSGG	1 cut(s)	78
NcoI	CCATGG	1 cut(s)	290
NdeII	GATC	2 cut(s)	70, 673
NlaIII	CATG	2 cut(s)	294, 324
NmuCI	GTSAC	1 cut(s)	196
NruI	TCGCGA	1 cut(s)	47
PciSI	GCTCTTC	1 cut(s)	651
PfeI	GAWTC	1 cut(s)	295
PkrI	GCNGC	3 cut(s)	522, 600, 715
PpuMI	RGGWCCY	1 cut(s)	32
PshAI	GACNNNNGTC	1 cut(s)	729
Psp5II	RGGWCCY	1 cut(s)	32
PspFI	CCCAGC	1 cut(s)	145
PspPI	GGNCC	5 cut(s)	32, 308, 461, 680, 764
PspPPI	RGGWCCY	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	673
RruI	TCGCGA	1 cut(s)	47
RsaI	GTAC	2 cut(s)	88, 454
RsaNI	GTAC	2 cut(s)	87, 453
SacII	CCGCGG	2 cut(s)	278, 793
SapI	GCTCTTC	1 cut(s)	651
SaqAI	TTAA	2 cut(s)	18, 584
SatI	GCNGC	3 cut(s)	521, 599, 714
Sau3AI	GATC	2 cut(s)	70, 673
Sau96I	GGNCC	5 cut(s)	32, 308, 461, 680, 764
ScrFI	CCNGG	1 cut(s)	78
Sfr303I	CCGCGG	2 cut(s)	278, 793
SgrBI	CCGCGG	2 cut(s)	278, 793
SinI	GGWCC	4 cut(s)	32, 308, 461, 680
Sse9I	AATT	4 cut(s)	412, 494, 561, 585
SsiI	CCGC	4 cut(s)	275, 277, 790, 792
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	290
TaaI	ACNGT	4 cut(s)	57, 86, 335, 508
TasI	AATT	4 cut(s)	412, 494, 561, 585
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	2 cut(s)	18, 584
Tru9I	TTAA	2 cut(s)	18, 584
TscAI	CASTG	4 cut(s)	135, 333, 487, 643
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	3 cut(s)	520, 598, 713
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	2 cut(s)	669, 682
TspRI	CASTG	4 cut(s)	135, 333, 487, 643
VpaK11BI	GGWCC	4 cut(s)	32, 308, 461, 680
XapI	RAATTY	1 cut(s)	494
XmiI	GTMKAC	1 cut(s)	439
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.