Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0018132

Physical Location & Seq

Genomic Coordinates Forward (+)

44393391 .. 44439836

Gene Structure 46446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG320300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGTCACTGAGTCACCAGACATGGAACATTGGCTCTTCTGCCCCGAATTTTACACTACAAGGCCACTCAAAAGGAGTGAATTGTATTGATTACTTCATTCACAGGGATAAGACTTACCTGTTAAGTGGTTCTGATGACTTCACTGCCAAGACAGGAAACCAAAAAGATTTTGAAGATGCACTGCAGAAACTTCGTGGCAGAGATGCCGACATATCTCAAGAAGCAGAAGAAATCCAGAGATCCATTATTGAGAAGAGTGTTTGTATTTGGTTTATGCAGGCTACGATATCCAATGGGACTGTGTATGAGAAGGACATTGAGCCCCTTGGTCCAGCTACATATTATGTGACTGACACAAACAGATGGGGAGTTAGCAATGTCGGTCTTAAAACACAGTTTGTAGCTGCATCATATTTGATTGGGACCAACATTCCAAAGATGTTCTTATTGTTAAAGATTTTGATATACGGAAGGAGACAAATAAAGACATCTTTGCTAGCTATTGAAAAGGTATACAAGTCTCAGGTGGTTTCAGAGAATTACCTTGAAATCCATTTCATCTGGGCTGGAAAGGGGACTTGCTGTATACCAGAGGAGGGCACTTATGGACCTCTTGTTTCAGCCATCAGTGCTACACCTGAATTCAAACTTACCGTCAGCAACAAGCTGCCAAGTAGTAAGAAGAATAGGACTGGGCTTATTGTGGGAATTGTTGTTGGTTGTGGAGTTTTAATTCTGGTGGTGCTGCTTTTATATATTGTTCAAGGAAGAAAGAGGCACAACACTGATGATGACTATGATGAAGAGCTGTTGGGAATAGATCTTGGACCTCTCACTTTCAGTTTTTCTGAACTGAAGGCAGCTACAAATGACTTTAGTCTAGATAATAAGCTTGGAGAGGGAGGATTTGGGCCCGTCTTCAAATCTCGTGAATGCCTTCAGAAGGAACTTGAAGGATGCTGGTTTGATCATATCCCAGAGGTCATGAGAAATGAATGGGCAAGCTGTAAAGCAGTTGGCCCAAGTCACATTTGCCAAATTGTCTGCGAATTCGTTTTTCCTGAAACTGATCACGACTATTCCTGGACCTCACTTCAACTTGCACATCAATCAGATATCATACAAGTTACAAGTGAAAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

381

Amino Acids

42.62

Weight (kDa)

5.47

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40	PF00400	15 - 50	4.5e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018132)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g11110
rosa_chinensis	RchiOBHm_Chr4g0393401
rosa_multiflora	Rmu_sc0004501.1_g000005 Rmu_sc0009248.1_g000015 Rmu_ssc0000054.1_g000002
rosa_roxburghii	Rroxscaffold_3G00221320 Rroxscaffold_3G00267970
rosa_rugosa	Rorug05G0092000
rosa_samantha	Rh1CG252000 Rh3AG320300 Rh5AG483500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	513, 586
AclWI	GGATC	1 cut(s)	234
AcsI	RAATTY	3 cut(s)	46, 641, 1049
AcuI	CTGAAG	2 cut(s)	875, 923
AfiI	CCNNNNNNNGG	2 cut(s)	596, 943
AgsI	TTSAA	8 cut(s)	173, 506, 548, 646, 764, 922, 953, 1097
AjnI	CCWGG	1 cut(s)	1082
AluBI	AGCT	8 cut(s)	335, 404, 500, 667, 808, 863, 892, 1005
AluI	AGCT	8 cut(s)	335, 404, 500, 667, 808, 863, 892, 1005
Alw26I	GTCTC	2 cut(s)	469, 525
AlwI	GGATC	1 cut(s)	234
AoxI	GGCC	3 cut(s)	61, 911, 1018
ApaI	GGGCCC	1 cut(s)	915
ApeKI	GCWGC	4 cut(s)	404, 667, 745, 860
ApoI	RAATTY	3 cut(s)	46, 641, 1049
ArsI	GACNNNNNNTTYG	2 cut(s)	639, 671
Asp700I	GAANNNNTTC	1 cut(s)	936
AspS9I	GGNCC	8 cut(s)	329, 423, 608, 827, 911, 912, 1019, 1086
AsuHPI	GGTGA	1 cut(s)	5
AsuNHI	GCTAGC	1 cut(s)	496
AvaII	GGWCC	5 cut(s)	329, 423, 608, 827, 1086
BaeGI	GKGCMC	2 cut(s)	602, 915
BanII	GRGCYC	2 cut(s)	324, 915
BauI	CACGAG	1 cut(s)	927
BbsI	GAAGAC	1 cut(s)	910
BbvI	GCAGC	4 cut(s)	391, 654, 732, 872
BccI	CCATC	2 cut(s)	357, 632
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciT130I	CCWGG	1 cut(s)	1084
BclI	TGATCA	2 cut(s)	967, 1069
BcoDI	GTCTC	2 cut(s)	469, 525
BfaI	CTAG	2 cut(s)	497, 881
BfmI	CTRYAG	1 cut(s)	182
BglII	AGATCT	1 cut(s)	820
BisI	GCNGC	4 cut(s)	405, 668, 746, 861
BlsI	GCNGC	4 cut(s)	406, 669, 747, 862
Bme1390I	CCNGG	1 cut(s)	1084
Bme18I	GGWCC	5 cut(s)	329, 423, 608, 827, 1086
BmgT120I	GGNCC	8 cut(s)	329, 423, 608, 827, 911, 912, 1019, 1086
BmiI	GGNNCC	2 cut(s)	424, 913
BmrFI	CCNGG	1 cut(s)	1084
BmrI	ACTGGG	1 cut(s)	702
BmsI	GCATC	4 cut(s)	166, 193, 416, 947
BmtI	GCTAGC	1 cut(s)	500
BmuI	ACTGGG	1 cut(s)	702
BoxI	GACNNNNGTC	1 cut(s)	876
BpiI	GAAGAC	1 cut(s)	910
BpuEI	CTTGAG	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	2 cut(s)	596, 943
Bse1I	ACTGG	1 cut(s)	697
Bse3DI	GCAATG	1 cut(s)	382
BseBI	CCWGG	1 cut(s)	1084
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	1 cut(s)	962
BseLI	CCNNNNNNNGG	2 cut(s)	596, 943
BseMI	GCAATG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	536
BseNI	ACTGG	1 cut(s)	697
BseRI	GAGGAG	1 cut(s)	608
BseSI	GKGCMC	2 cut(s)	602, 915
BseXI	GCAGC	4 cut(s)	391, 654, 732, 872
BshFI	GGCC	3 cut(s)	63, 913, 1020
BslFI	GGGAC	3 cut(s)	310, 436, 589
BslI	CCNNNNNNNGG	2 cut(s)	596, 943
BsmAI	GTCTC	2 cut(s)	469, 525
BsmFI	GGGAC	3 cut(s)	310, 436, 589
BsmI	GAATGC	1 cut(s)	938
BsnI	GGCC	3 cut(s)	63, 913, 1020
Bsp120I	GGGCCC	1 cut(s)	911
Bsp1286I	GDGCHC	3 cut(s)	324, 602, 915
Bsp143I	GATC	4 cut(s)	239, 820, 967, 1069
BspANI	GGCC	3 cut(s)	63, 913, 1020
BspCNI	CTCAG	1 cut(s)	535
BspHI	TCATGA	1 cut(s)	984
BspLI	GGNNCC	2 cut(s)	424, 913
BspMAI	CTGCAG	1 cut(s)	186
BspOI	GCTAGC	1 cut(s)	500
BspPI	GGATC	1 cut(s)	234
BspQI	GCTCTTC	2 cut(s)	40, 798
BsrDI	GCAATG	1 cut(s)	382
BsrI	ACTGG	1 cut(s)	697
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	4 cut(s)	239, 820, 967, 1069
BssNAI	GTATAC	2 cut(s)	514, 587
BssSI	CACGAG	1 cut(s)	927
BssT1I	CCWWGG	1 cut(s)	325
Bst1107I	GTATAC	2 cut(s)	514, 587
Bst2BI	CACGAG	1 cut(s)	927
Bst2UI	CCWGG	1 cut(s)	1084
Bst4CI	ACNGT	3 cut(s)	301, 396, 655
Bst6I	CTCTTC	3 cut(s)	40, 248, 798
BstC8I	GCNNGC	3 cut(s)	279, 498, 1003
BstDEI	CTNAG	2 cut(s)	8, 522
BstENI	CCTNNNNNAGG	1 cut(s)	941
BstF5I	GGATG	1 cut(s)	962
BstKTI	GATC	4 cut(s)	242, 823, 970, 1072
BstMAI	GTCTC	2 cut(s)	469, 525
BstMBI	GATC	4 cut(s)	239, 820, 967, 1069
BstMWI	GCNNNNNNNGC	1 cut(s)	629
BstNI	CCWGG	1 cut(s)	1084
BstPAI	GACNNNNGTC	1 cut(s)	876
BstSCI	CCNGG	1 cut(s)	1082
BstSFI	CTRYAG	1 cut(s)	182
BstSLI	GKGCMC	2 cut(s)	602, 915
BstV1I	GCAGC	4 cut(s)	391, 654, 732, 872
BstV2I	GAAGAC	1 cut(s)	910
BstX2I	RGATCY	2 cut(s)	239, 820
BstYI	RGATCY	2 cut(s)	239, 820
BstZ17I	GTATAC	2 cut(s)	514, 587
BsuRI	GGCC	3 cut(s)	63, 913, 1020
BtsCI	GGATG	1 cut(s)	962
BtsI	GCAGTG	2 cut(s)	141, 179
BtsIMutI	CAGTG	5 cut(s)	5, 141, 179, 634, 783
Cac8I	GCNNGC	3 cut(s)	279, 498, 1003
CciI	TCATGA	1 cut(s)	984
Cfr13I	GGNCC	8 cut(s)	329, 423, 608, 827, 911, 912, 1019, 1086
CviAII	CATG	2 cut(s)	21, 985
DdeI	CTNAG	2 cut(s)	8, 522
DpnI	GATC	4 cut(s)	241, 822, 969, 1071
DpnII	GATC	4 cut(s)	239, 820, 967, 1069
Eam1104I	CTCTTC	3 cut(s)	40, 248, 798
EarI	CTCTTC	3 cut(s)	40, 248, 798
Eco130I	CCWWGG	1 cut(s)	325
Eco24I	GRGCYC	2 cut(s)	324, 915
Eco32I	GATATC	2 cut(s)	288, 1117
Eco47I	GGWCC	5 cut(s)	329, 423, 608, 827, 1086
Eco57I	CTGAAG	2 cut(s)	875, 923
EcoNI	CCTNNNNNAGG	1 cut(s)	941
EcoRI	GAATTC	2 cut(s)	641, 1049
EcoRII	CCWGG	1 cut(s)	1082
EcoRV	GATATC	2 cut(s)	288, 1117
EcoT14I	CCWWGG	1 cut(s)	325
EcoT38I	GRGCYC	2 cut(s)	324, 915
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	2 cut(s)	24, 988
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FaqI	GGGAC	3 cut(s)	310, 436, 589
FatI	CATG	2 cut(s)	20, 984
FbaI	TGATCA	2 cut(s)	967, 1069
FblI	GTMKAC	2 cut(s)	513, 586
Fnu4HI	GCNGC	4 cut(s)	405, 668, 746, 861
FokI	GGATG	1 cut(s)	969
FriOI	GRGCYC	2 cut(s)	324, 915
Fsp4HI	GCNGC	4 cut(s)	405, 668, 746, 861
FspBI	CTAG	2 cut(s)	497, 881
GluI	GCNGC	4 cut(s)	405, 668, 746, 861
HaeIII	GGCC	3 cut(s)	63, 913, 1020
Hin1II	CATG	2 cut(s)	24, 988
HindIII	AAGCTT	1 cut(s)	890
HinfI	GANTC	1 cut(s)	10
HphI	GGTGA	1 cut(s)	5
Hpy166II	GTNNAC	2 cut(s)	514, 587
Hpy188I	TCNGA	5 cut(s)	133, 535, 850, 942, 1114
Hpy188III	TCNNGA	7 cut(s)	218, 235, 881, 929, 985, 1061, 1073
Hpy8I	GTNNAC	2 cut(s)	514, 587
HpyAV	CCTTC	6 cut(s)	304, 465, 850, 937, 947, 947
HpyCH4III	ACNGT	3 cut(s)	301, 396, 655
HpyCH4V	TGCA	5 cut(s)	179, 184, 277, 407, 1103
HpyF10VI	GCNNNNNNNGC	1 cut(s)	629
HpyF3I	CTNAG	2 cut(s)	8, 522
Hsp92II	CATG	2 cut(s)	24, 988
Ksp22I	TGATCA	2 cut(s)	967, 1069
Kzo9I	GATC	4 cut(s)	239, 820, 967, 1069
LguI	GCTCTTC	2 cut(s)	40, 798
Lsp1109I	GCAGC	4 cut(s)	391, 654, 732, 872
LweI	GCATC	4 cut(s)	166, 193, 416, 947
MaeI	CTAG	2 cut(s)	497, 881
MaeIII	GTNAC	5 cut(s)	3, 11, 346, 1025, 1126
MalI	GATC	4 cut(s)	241, 822, 969, 1071
MboI	GATC	4 cut(s)	239, 820, 967, 1069
MboII	GAAGA	8 cut(s)	27, 185, 239, 265, 694, 780, 815, 910
MflI	RGATCY	2 cut(s)	239, 820
MhlI	GDGCHC	3 cut(s)	324, 602, 915
MluCI	AATT	8 cut(s)	46, 79, 538, 641, 708, 732, 1038, 1049
MlyI	GAGTC	1 cut(s)	19
MnlI	CCTC	9 cut(s)	586, 589, 621, 768, 840, 892, 896, 973, 1099
MroXI	GAANNNNTTC	1 cut(s)	936
MseI	TTAA	4 cut(s)	122, 387, 452, 731
MspR9I	CCNGG	1 cut(s)	1084
Mva1269I	GAATGC	1 cut(s)	938
MvaI	CCWGG	1 cut(s)	1084
MwoI	GCNNNNNNNGC	1 cut(s)	629
NdeII	GATC	4 cut(s)	239, 820, 967, 1069
NheI	GCTAGC	1 cut(s)	496
NlaIII	CATG	2 cut(s)	24, 988
NlaIV	GGNNCC	2 cut(s)	424, 913
NmuCI	GTSAC	4 cut(s)	3, 11, 346, 1025
PagI	TCATGA	1 cut(s)	984
PciSI	GCTCTTC	2 cut(s)	40, 798
PctI	GAATGC	1 cut(s)	938
PdmI	GAANNNNTTC	1 cut(s)	936
PfoI	TCCNGGA	1 cut(s)	1082
PkrI	GCNGC	4 cut(s)	406, 669, 747, 862
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
PshAI	GACNNNNGTC	1 cut(s)	876
Psp6I	CCWGG	1 cut(s)	1082
PspGI	CCWGG	1 cut(s)	1082
PspN4I	GGNNCC	2 cut(s)	424, 913
PspOMI	GGGCCC	1 cut(s)	911
PspPI	GGNCC	8 cut(s)	329, 423, 608, 827, 911, 912, 1019, 1086
PstI	CTGCAG	1 cut(s)	186
PsuI	RGATCY	2 cut(s)	239, 820
SapI	GCTCTTC	2 cut(s)	40, 798
SaqAI	TTAA	4 cut(s)	122, 387, 452, 731
SatI	GCNGC	4 cut(s)	405, 668, 746, 861
Sau3AI	GATC	4 cut(s)	239, 820, 967, 1069
Sau96I	GGNCC	8 cut(s)	329, 423, 608, 827, 911, 912, 1019, 1086
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	1084
SduI	GDGCHC	3 cut(s)	324, 602, 915
SfaNI	GCATC	4 cut(s)	166, 193, 416, 947
SfcI	CTRYAG	1 cut(s)	182
SinI	GGWCC	5 cut(s)	329, 423, 608, 827, 1086
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
Sse9I	AATT	8 cut(s)	46, 79, 538, 641, 708, 732, 1038, 1049
SspMI	CTAG	2 cut(s)	497, 881
StyD4I	CCNGG	1 cut(s)	1082
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	3 cut(s)	301, 396, 655
TaqII	GACCGA	1 cut(s)	371
TasI	AATT	8 cut(s)	46, 79, 538, 641, 708, 732, 1038, 1049
Tru1I	TTAA	4 cut(s)	122, 387, 452, 731
Tru9I	TTAA	4 cut(s)	122, 387, 452, 731
TscAI	CASTG	5 cut(s)	12, 148, 186, 634, 790
TseFI	GTSAC	4 cut(s)	3, 11, 346, 1025
TseI	GCWGC	4 cut(s)	404, 667, 745, 860
Tsp45I	GTSAC	4 cut(s)	3, 11, 346, 1025
TspDTI	ATGAA	4 cut(s)	85, 547, 816, 1008
TspGWI	ACGGA	1 cut(s)	483
TspRI	CASTG	5 cut(s)	12, 148, 186, 634, 790
VpaK11BI	GGWCC	5 cut(s)	329, 423, 608, 827, 1086
XagI	CCTNNNNNAGG	1 cut(s)	941
XapI	RAATTY	3 cut(s)	46, 641, 1049
XbaI	TCTAGA	1 cut(s)	880
XmiI	GTMKAC	2 cut(s)	513, 586
XmnI	GAANNNNTTC	1 cut(s)	936
XspI	CTAG	2 cut(s)	497, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.