Rroxscaffold_3G00267970

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
61163272 .. 61166443
3172 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00267970.1

Sequence Viewer

Length: 153 bp
ATGAGTGAGAGTGAGTTGCATTACCGGAATAAGAGAGAAGCAACAAAAGAGAGAGATAGAAGAGAAAAGAAAGACGAACAGAATAGAGAAAAAGAGGACATCTCGGCGACAAGAAAACAGAAGCATTGCTGGGTTTGGGATTTCAATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

50

Amino Acids

6.34

Weight (kDa)

7.9

Isoelectric Point (pI)

73.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 145
BplI GAGNNNNNCTC 2 cut(s) 86, 118
BsaWI WCCGGW 1 cut(s) 24
Bse3DI GCAATG 1 cut(s) 124
BseMI GCAATG 1 cut(s) 124
BseYI CCCAGC 1 cut(s) 129
BsiSI CCGG 1 cut(s) 25
BsrDI GCAATG 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
FspEI CC 8 cut(s) 10, 38, 80, 89, 115, 116, 121, 122
GsaI CCCAGC 1 cut(s) 133
HapII CCGG 1 cut(s) 25
HpaII CCGG 1 cut(s) 25
HpyCH4V TGCA 1 cut(s) 19
LpnPI CCDG 2 cut(s) 38, 115
MboII GAAGA 1 cut(s) 72
MnlI CCTC 1 cut(s) 88
MspI CCGG 1 cut(s) 25
NmeAIII GCCGAG 1 cut(s) 83
PspFI CCCAGC 1 cut(s) 129
SgeI CNNG 4 cut(s) 37, 115, 123, 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.