Rh5AG483500
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
82719135 .. 82719743
609 bp
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UTR
Exon/CDS
Intron
Rh5AG483500.1

Sequence Viewer

Length: 360 bp
ATGCTATCTTTCAGTGTGCTCCATGCTGTTGACCAAAAGCCTTTAATTTCTACAGAATTCAAACCTACCGTCAGCAACAAGCTGCCAAGTATTAAGAAGAATAGGACTGGGCTGATTGTGGGAATTGTTGTTGGTGGTGGAGTTTTAATTCTGGTGGTGATGCTTTTCTATATTGTTCAAAGAAGAAAGAGGCACAACACTGATGATGACTATGATGAAGAGCTATTGGGGATAGATCTTGGACCTCTCACTTTCAGTTTTTCTGAACTGAAGGCAGCTACAAATGACTTTAGTCCAGATAATAAGCTTGGAGAGGGAGGATTTGGGCCTGTCTTCAAAGTAAGTTACTATTCTGATTAA

Protein Analysis

119

Amino Acids

13.14

Weight (kDa)

6.08

Isoelectric Point (pI)

32.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 56
AcuI CTGAAG 1 cut(s) 290
AgsI TTSAA 3 cut(s) 61, 179, 337
AluBI AGCT 4 cut(s) 82, 223, 278, 307
AluI AGCT 4 cut(s) 82, 223, 278, 307
Alw21I GWGCWC 1 cut(s) 21
AoxI GGCC 1 cut(s) 326
ApeKI GCWGC 2 cut(s) 82, 275
ApoI RAATTY 1 cut(s) 56
ArsI GACNNNNNNTTYG 2 cut(s) 54, 86
AspS9I GGNCC 2 cut(s) 242, 326
AsuHPI GGTGA 1 cut(s) 169
AvaII GGWCC 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 325
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 2 cut(s) 69, 287
BfmI CTRYAG 1 cut(s) 51
BglII AGATCT 1 cut(s) 235
BisI GCNGC 2 cut(s) 83, 276
BlsI GCNGC 2 cut(s) 84, 277
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 2 cut(s) 242, 326
BmrI ACTGGG 1 cut(s) 117
BmsI GCATC 1 cut(s) 150
BmuI ACTGGG 1 cut(s) 117
BoxI GACNNNNGTC 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 325
Bse1I ACTGG 1 cut(s) 112
BseNI ACTGG 1 cut(s) 112
BseXI GCAGC 2 cut(s) 69, 287
BshFI GGCC 1 cut(s) 328
BsiHKAI GWGCWC 1 cut(s) 21
BsnI GGCC 1 cut(s) 328
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 1 cut(s) 235
BspANI GGCC 1 cut(s) 328
BspQI GCTCTTC 1 cut(s) 213
BsrI ACTGG 1 cut(s) 112
BssMI GATC 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 70
Bst6I CTCTTC 1 cut(s) 213
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BstPAI GACNNNNGTC 1 cut(s) 291
BstSFI CTRYAG 1 cut(s) 51
BstV1I GCAGC 2 cut(s) 69, 287
BstV2I GAAGAC 1 cut(s) 325
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BsuRI GGCC 1 cut(s) 328
BtsIMutI CAGTG 2 cut(s) 19, 198
Cfr13I GGNCC 2 cut(s) 242, 326
CviAII CATG 1 cut(s) 23
CviJI RGCY 7 cut(s) 40, 82, 112, 223, 278, 307, 328
CviKI_1 RGCY 7 cut(s) 40, 82, 112, 223, 278, 307, 328
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco47I GGWCC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 290
EcoRI GAATTC 1 cut(s) 56
FaeI CATG 1 cut(s) 26
FaiI YATR 3 cut(s) 24, 171, 213
FatI CATG 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 83, 276
Fsp4HI GCNGC 2 cut(s) 83, 276
GluI GCNGC 2 cut(s) 83, 276
HaeIII GGCC 1 cut(s) 328
Hin1II CATG 1 cut(s) 26
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HindIII AAGCTT 1 cut(s) 305
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 2 cut(s) 265, 355
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 1 cut(s) 31
HpyAV CCTTC 1 cut(s) 265
HpyCH4III ACNGT 1 cut(s) 70
Hsp92II CATG 1 cut(s) 26
Kzo9I GATC 1 cut(s) 235
LguI GCTCTTC 1 cut(s) 213
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 4 cut(s) 93, 137, 309, 342
Lsp1109I GCAGC 2 cut(s) 69, 287
LweI GCATC 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 344
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 4 cut(s) 109, 195, 230, 325
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 4 cut(s) 45, 56, 123, 147
MnlI CCTC 4 cut(s) 183, 255, 307, 311
MseI TTAA 4 cut(s) 44, 93, 146, 358
NdeII GATC 1 cut(s) 235
NlaIII CATG 1 cut(s) 26
PciSI GCTCTTC 1 cut(s) 213
PkrI GCNGC 2 cut(s) 84, 277
PshAI GACNNNNGTC 1 cut(s) 291
PspPI GGNCC 2 cut(s) 242, 326
PsuI RGATCY 1 cut(s) 235
SapI GCTCTTC 1 cut(s) 213
SaqAI TTAA 4 cut(s) 44, 93, 146, 358
SatI GCNGC 2 cut(s) 83, 276
Sau3AI GATC 1 cut(s) 235
Sau96I GGNCC 2 cut(s) 242, 326
SduI GDGCHC 1 cut(s) 21
SetI ASST 6 cut(s) 67, 84, 225, 247, 280, 309
SfaNI GCATC 1 cut(s) 150
SfcI CTRYAG 1 cut(s) 51
SgeI CNNG 9 cut(s) 35, 91, 99, 120, 164, 251, 308, 320, 341
SinI GGWCC 1 cut(s) 242
Sse9I AATT 4 cut(s) 45, 56, 123, 147
TaaI ACNGT 1 cut(s) 70
TasI AATT 4 cut(s) 45, 56, 123, 147
Tru1I TTAA 4 cut(s) 44, 93, 146, 358
Tru9I TTAA 4 cut(s) 44, 93, 146, 358
TscAI CASTG 2 cut(s) 19, 205
TseI GCWGC 2 cut(s) 82, 275
TspDTI ATGAA 1 cut(s) 231
TspRI CASTG 2 cut(s) 19, 205
VpaK11BI GGWCC 1 cut(s) 242
XapI RAATTY 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.