Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000054.1

Orthogroup ID

OG0018132

Physical Location & Seq

Genomic Coordinates Forward (+)

7615 .. 9120

Gene Structure 1506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000054.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgttcttgttgttaaagattttgatatacggaaggagacaaataaagacatctttgctagctattgaaaaggtatacaaggctcaggtggtttcagagaattaccttgaaatccatttcttctgggctggaaaggggacttgttgtatactagaggagggtacttatggacctcttgtttcagccatcagtgctacacctgaattcaaacctaccatcagcaacaagctgccaagtagtaagaagaatagaactgggcttattgtgggaattgttgttggttgtggagttttaattctggtggtgctgcttttatatattgttcaaggaagaaagaggcacaacactgatgatgactatgatgaagagctgttgggaatagatcttggacctctcactttcagtttttctgaactgaaggcagctacaaatgactttagtctagataataagcttggagagggaggatttgggcccgtcttcaaaatatgggacaggtgtggggatggggatatggaggagaagggcagcttggtctgggctcacggatgcatatggtgtcctcccctcatcctataccttgtatcaagtcctcttcttatggccttgtatcaagtcctctttcttatgggatcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

212

Amino Acids

23.48

Weight (kDa)

5.94

Isoelectric Point (pI)

28.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018132)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g11110
rosa_chinensis	RchiOBHm_Chr4g0393401
rosa_multiflora	Rmu_sc0004501.1_g000005 Rmu_sc0009248.1_g000015 Rmu_ssc0000054.1_g000002
rosa_roxburghii	Rroxscaffold_3G00221320 Rroxscaffold_3G00267970
rosa_rugosa	Rorug05G0092000
rosa_samantha	Rh1CG252000 Rh3AG320300 Rh5AG483500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	75, 148
AcsI	RAATTY	1 cut(s)	203
AcuI	CTGAAG	1 cut(s)	437
AfaI	GTAC	1 cut(s)	163
AgsI	TTSAA	5 cut(s)	68, 110, 208, 326, 484
AjuI	GAANNNNNNNTTGG	2 cut(s)	515, 547
AluBI	AGCT	6 cut(s)	62, 229, 370, 425, 454, 531
AluI	AGCT	6 cut(s)	62, 229, 370, 425, 454, 531
Alw26I	GTCTC	1 cut(s)	31
AoxI	GGCC	2 cut(s)	473, 603
ApaI	GGGCCC	1 cut(s)	477
ApeKI	GCWGC	4 cut(s)	229, 307, 422, 528
ApoI	RAATTY	1 cut(s)	203
AspS9I	GGNCC	4 cut(s)	170, 389, 473, 474
AsuNHI	GCTAGC	1 cut(s)	58
AvaII	GGWCC	2 cut(s)	170, 389
BaeGI	GKGCMC	1 cut(s)	477
BanII	GRGCYC	2 cut(s)	477, 544
BbsI	GAAGAC	1 cut(s)	472
BbvI	GCAGC	4 cut(s)	216, 294, 434, 540
BccI	CCATC	3 cut(s)	194, 224, 500
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	3 cut(s)	59, 152, 443
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	4 cut(s)	230, 308, 423, 529
BlsI	GCNGC	4 cut(s)	231, 309, 424, 530
Bme18I	GGWCC	2 cut(s)	170, 389
BmgT120I	GGNCC	4 cut(s)	170, 389, 473, 474
BmiI	GGNNCC	1 cut(s)	475
BmrI	ACTGGG	1 cut(s)	264
BmsI	GCATC	1 cut(s)	539
BmtI	GCTAGC	1 cut(s)	62
BmuI	ACTGGG	1 cut(s)	264
BoxI	GACNNNNGTC	1 cut(s)	438
BpiI	GAAGAC	1 cut(s)	472
Bpu10I	CCTNAGC	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	259
BseGI	GGATG	3 cut(s)	511, 554, 570
BseMII	CTCAG	1 cut(s)	98
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	2 cut(s)	170, 533
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	4 cut(s)	216, 294, 434, 540
BshFI	GGCC	2 cut(s)	475, 605
BslFI	GGGAC	2 cut(s)	151, 506
BsmAI	GTCTC	1 cut(s)	31
BsmFI	GGGAC	2 cut(s)	151, 506
BsnI	GGCC	2 cut(s)	475, 605
Bsp120I	GGGCCC	1 cut(s)	473
Bsp1286I	GDGCHC	2 cut(s)	477, 544
Bsp143I	GATC	2 cut(s)	382, 632
BspANI	GGCC	2 cut(s)	475, 605
BspCNI	CTCAG	1 cut(s)	97
BspHI	TCATGA	1 cut(s)	635
BspLI	GGNNCC	1 cut(s)	475
BspOI	GCTAGC	1 cut(s)	62
BspQI	GCTCTTC	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	259
BssMI	GATC	2 cut(s)	382, 632
BssNAI	GTATAC	2 cut(s)	76, 149
Bst1107I	GTATAC	2 cut(s)	76, 149
Bst6I	CTCTTC	2 cut(s)	360, 600
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	84
BstF5I	GGATG	3 cut(s)	511, 554, 570
BstKTI	GATC	2 cut(s)	385, 635
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	2 cut(s)	382, 632
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstPAI	GACNNNNGTC	1 cut(s)	438
BstSLI	GKGCMC	1 cut(s)	477
BstV1I	GCAGC	4 cut(s)	216, 294, 434, 540
BstV2I	GAAGAC	1 cut(s)	472
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BstZ17I	GTATAC	2 cut(s)	76, 149
BsuRI	GGCC	2 cut(s)	475, 605
BtsCI	GGATG	3 cut(s)	511, 554, 570
BtsIMutI	CAGTG	2 cut(s)	196, 345
Cac8I	GCNNGC	1 cut(s)	60
CciI	TCATGA	1 cut(s)	635
Cfr13I	GGNCC	4 cut(s)	170, 389, 473, 474
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	1 cut(s)	636
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	2 cut(s)	384, 634
DpnII	GATC	2 cut(s)	382, 632
Eam1104I	CTCTTC	2 cut(s)	360, 600
EarI	CTCTTC	2 cut(s)	360, 600
Eco24I	GRGCYC	2 cut(s)	477, 544
Eco47I	GGWCC	2 cut(s)	170, 389
Eco57I	CTGAAG	1 cut(s)	437
EcoRI	GAATTC	1 cut(s)	203
EcoT22I	ATGCAT	1 cut(s)	554
EcoT38I	GRGCYC	2 cut(s)	477, 544
FaeI	CATG	1 cut(s)	639
FalI	AAGNNNNNCTT	2 cut(s)	515, 547
FaqI	GGGAC	2 cut(s)	151, 506
FatI	CATG	1 cut(s)	635
FauNDI	CATATG	1 cut(s)	554
FblI	GTMKAC	2 cut(s)	75, 148
Fnu4HI	GCNGC	4 cut(s)	230, 308, 423, 529
FokI	GGATG	3 cut(s)	518, 557, 561
FriOI	GRGCYC	2 cut(s)	477, 544
Fsp4HI	GCNGC	4 cut(s)	230, 308, 423, 529
FspBI	CTAG	3 cut(s)	59, 152, 443
GluI	GCNGC	4 cut(s)	230, 308, 423, 529
HaeIII	GGCC	2 cut(s)	475, 605
Hin1II	CATG	1 cut(s)	639
HindIII	AAGCTT	1 cut(s)	452
Hpy166II	GTNNAC	2 cut(s)	76, 149
Hpy188I	TCNGA	2 cut(s)	97, 412
Hpy188III	TCNNGA	2 cut(s)	443, 636
Hpy8I	GTNNAC	2 cut(s)	76, 149
HpyAV	CCTTC	3 cut(s)	27, 412, 517
HpyCH4V	TGCA	1 cut(s)	552
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	1 cut(s)	84
Hsp92II	CATG	1 cut(s)	639
Kzo9I	GATC	2 cut(s)	382, 632
LguI	GCTCTTC	1 cut(s)	360
LpnPI	CCDG	8 cut(s)	71, 109, 114, 213, 240, 284, 481, 523
Lsp1109I	GCAGC	4 cut(s)	216, 294, 434, 540
LweI	GCATC	1 cut(s)	539
MaeI	CTAG	3 cut(s)	59, 152, 443
MalI	GATC	2 cut(s)	384, 634
MboI	GATC	2 cut(s)	382, 632
MboII	GAAGA	6 cut(s)	112, 256, 342, 377, 472, 587
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	2 cut(s)	477, 544
MluCI	AATT	4 cut(s)	100, 203, 270, 294
Mph1103I	ATGCAT	1 cut(s)	554
MseI	TTAA	2 cut(s)	14, 293
MwoI	GCNNNNNNNGC	1 cut(s)	191
NdeI	CATATG	1 cut(s)	554
NdeII	GATC	2 cut(s)	382, 632
NheI	GCTAGC	1 cut(s)	58
NlaIII	CATG	1 cut(s)	639
NlaIV	GGNNCC	1 cut(s)	475
NsiI	ATGCAT	1 cut(s)	554
PagI	TCATGA	1 cut(s)	635
PciSI	GCTCTTC	1 cut(s)	360
PkrI	GCNGC	4 cut(s)	231, 309, 424, 530
PshAI	GACNNNNGTC	1 cut(s)	438
PspN4I	GGNNCC	1 cut(s)	475
PspOMI	GGGCCC	1 cut(s)	473
PspPI	GGNCC	4 cut(s)	170, 389, 473, 474
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	2 cut(s)	14, 293
SatI	GCNGC	4 cut(s)	230, 308, 423, 529
Sau3AI	GATC	2 cut(s)	382, 632
Sau96I	GGNCC	4 cut(s)	170, 389, 473, 474
SduI	GDGCHC	2 cut(s)	477, 544
SfaNI	GCATC	1 cut(s)	539
SinI	GGWCC	2 cut(s)	170, 389
Sse9I	AATT	4 cut(s)	100, 203, 270, 294
SspMI	CTAG	3 cut(s)	59, 152, 443
TasI	AATT	4 cut(s)	100, 203, 270, 294
Tru1I	TTAA	2 cut(s)	14, 293
Tru9I	TTAA	2 cut(s)	14, 293
TscAI	CASTG	2 cut(s)	196, 352
TseI	GCWGC	4 cut(s)	229, 307, 422, 528
TspDTI	ATGAA	1 cut(s)	378
TspGWI	ACGGA	2 cut(s)	45, 561
TspRI	CASTG	2 cut(s)	196, 352
VpaK11BI	GGWCC	2 cut(s)	170, 389
XapI	RAATTY	1 cut(s)	203
XbaI	TCTAGA	1 cut(s)	442
XmiI	GTMKAC	2 cut(s)	75, 148
XspI	CTAG	3 cut(s)	59, 152, 443
Zsp2I	ATGCAT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.