Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011329.1

Orthogroup ID

OG0009776

Physical Location & Seq

Genomic Coordinates Reverse (-)

4558 .. 10267

Gene Structure 5710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011329.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1947 bp

atgaagtacgtgttggtgacgggtggtgttgttagtggactcggcaaaggagtcacggccagtagtattggattgcttcttcaagcttgtggccttcgtgttacgtcaatcaaaattgatccttacttgaacaccgatgctgggacaatgtctccttttgagcatggggaagtgttcgtattagacgatggcggtgaggttgaccttgacctcggaaattatgagcggtttttggatctcactttgacccgcgacaacaatatcacaactggcaaaatttatcagtctgttattgacaaggagagaaagggagactatcttggaaagactgtccaggttgttcctcacattacggatgccatccaagagtggatagaacgtgtggcaatggtacctgtggacgggaaagaaggtccagctgatgtatgtgtcatcgaattgggtggaacaataggggatattgaatcaatgccctttattgaggcccttggccaattttcttatcgtgttggtcccggaaatttctgcttggttcatgtcagccttgtgcctgttctgaatgttgtcggtgagcagaaaacaaagcctacacagcatagtgttcgggtacttagaggacagggtttgacacctaatattctagcttgtaggagtacaaagccacttgaggagaatgtgaaggcaaaacttgctcaattttgccacgtaccggcagaaaatattgtcactctttatgatgttccaaacatctggcacatcccattgcttttaagagatcaaaaggcacatgaagcaatcttgaaagaattaaaccttcagagggttgctagagagccaaatttgaaggaatggacaaccaggacagaaatttcctcaaatttacatgattctgtcagaattgcaatggttggaaaatacaccggtctttcagatgcttacctctctgttcttaagattgtaatattgagcttcttgtgccaggctcttctacatgcttctgttgcttgccgtcggaaacttgttgtagattgggttgcagcaggtgaccttgaagatgttactgctaaagaggctcctgaggttcataaggctgcatgggatcttttgaagggcgctgatggtgttctagttccaggaggatttggtgatagaggagtgcaagggaaaattcttgcggcaaagtatgctcgtgaaaacaaagttccattcctgggcatttgcctgggaatgcaaattgctgttattgagtttgcacgatctgttcttggtatgcttgatgctaacagcacggagtttgatcctgaaactacaagtccttgtgtcgtatttatgccagagggttcaaaaacacatatgggaggcactatgcgtctgggatcaaggaggacctacttcacggttactgactgcaaatctgcaaaattgtatggagatgtggcgtttgttgatgaacgacatcgacatagatatgaggttaatcctgatatgatatcgcaattcgaaattgccggcttatcatttgttggcagagatgaaactggtcggcgcatggagattattgagctgcctgcccatccgtactttgttggtgttcagttccatcccgaatttaagtcaaggccaggcaaaccttctgctctgttcttaggactaatagcagcatgcaggcgttcagatacaatcctacaaaacaatggccatctgataaagcccgttgcaaatgggactagtaatggacacttcacagtgaaatcccaccagaatggacatgcatttaagtcatcaaatgggtgtctaaatggcgtgtatagcaatgctgtcggttatgatgtacagaagctgagtatgggtagatggcgtagctctagaggacttgtcttcaggacaaagctggattttgaagttttgaatgacacagcgggtaatttacaagaagatttggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003883 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006241 GO:0006629 GO:0006644 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009208 GO:0009209 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019856 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0046036 GO:0046112 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

CTP_synth_N GATase

Protein Analysis

648

Amino Acids

71.05

Weight (kDa)

6.69

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12670
fragaria_vesca	FvH4_3g13560 FvH4_3g13560
malus_domestica	MD10G1220500.v1.1
prunus_persica	Prupe.4G123800_v2.0.a1 Prupe.4G123800_v2.0.a1 Prupe.4G123800_v2.0.a1
pyrus_communis	pycom05g21760 pycom10g18630
rosa_chinensis	RchiOBHm_Chr5g0022521
rosa_laevigata	RLG00000032668
rosa_multiflora	Rmu_sc0011329.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056530
rosa_rugosa	Rorug05G0074500 Rorug05G0074600
rosa_samantha	Rh5AG161300 Rh5BG160200 Rh5CG174600 Rh5DG160900
rosa_wichuraiana	Rw0G005550 Rw5G014380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1031
Acc36I	ACCTGC	1 cut(s)	1031
Acc65I	GGTACC	1 cut(s)	391
AccB1I	GGYRCC	1 cut(s)	391
AccBSI	CCGCTC	1 cut(s)	226
AccII	CGCG	1 cut(s)	252
AciI	CCGC	5 cut(s)	192, 226, 250, 1175, 1919
AclWI	GGATC	5 cut(s)	113, 243, 1107, 1292, 1384
AcoI	YGGCCR	3 cut(s)	57, 490, 1696
AcsI	RAATTY	7 cut(s)	276, 520, 838, 867, 877, 1167, 1607
AcuI	CTGAAG	2 cut(s)	800, 1864
AfaI	GTAC	7 cut(s)	8, 393, 609, 655, 708, 1580, 1833
AfiI	CCNNNNNNNGG	5 cut(s)	141, 401, 709, 820, 1211
AflII	CTTAAG	1 cut(s)	950
AflIII	ACRYGT	2 cut(s)	9, 379
AgeI	ACCGGT	1 cut(s)	920
AhlI	ACTAGT	1 cut(s)	1727
AjnI	CCWGG	7 cut(s)	333, 857, 978, 1132, 1209, 1221, 1621
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	8 cut(s)	86, 419, 644, 969, 1564, 1840, 1863, 1891
AluI	AGCT	8 cut(s)	86, 419, 644, 969, 1564, 1840, 1863, 1891
Alw26I	GTCTC	2 cut(s)	156, 306
AlwI	GGATC	5 cut(s)	113, 243, 1107, 1292, 1384
AlwNI	CAGNNNCTG	1 cut(s)	1840
AoxI	GGCC	6 cut(s)	57, 91, 483, 490, 1619, 1696
ApeKI	GCWGC	4 cut(s)	1037, 1091, 1564, 1658
ApoI	RAATTY	7 cut(s)	276, 520, 838, 867, 877, 1167, 1607
AsiGI	ACCGGT	1 cut(s)	920
Asp718I	GGTACC	1 cut(s)	391
AspLEI	GCGC	2 cut(s)	1115, 1548
AspS9I	GGNCC	4 cut(s)	413, 484, 512, 1386
AsuC2I	CCSGG	1 cut(s)	516
AsuHPI	GGTGA	5 cut(s)	28, 206, 581, 1055, 1157
AsuII	TTCGAA	1 cut(s)	1500
AvaII	GGWCC	3 cut(s)	413, 512, 1386
AxyI	CCTNAGG	1 cut(s)	1077
BalI	TGGCCA	2 cut(s)	492, 1698
BanI	GGYRCC	1 cut(s)	391
BauI	CACGAG	1 cut(s)	1188
BbsI	GAAGAC	1 cut(s)	1870
BbvI	GCAGC	4 cut(s)	1049, 1078, 1551, 1670
BccI	CCATC	7 cut(s)	182, 368, 1112, 1581, 1608, 1707, 1848
BceAI	ACGGC	2 cut(s)	72, 993
BcgI	CGANNNNNNTGC	4 cut(s)	584, 618, 1801, 1835
BciT130I	CCWGG	7 cut(s)	335, 859, 980, 1134, 1211, 1223, 1623
BcnI	CCSGG	1 cut(s)	516
BcoDI	GTCTC	2 cut(s)	156, 306
BcuI	ACTAGT	1 cut(s)	1727
BfaI	CTAG	5 cut(s)	641, 828, 1127, 1728, 1866
BfoI	RGCGCY	1 cut(s)	1116
BfrI	CTTAAG	1 cut(s)	950
BfuAI	ACCTGC	1 cut(s)	1031
BisI	GCNGC	5 cut(s)	1038, 1092, 1176, 1565, 1659
BlsI	GCNGC	5 cut(s)	1039, 1093, 1177, 1566, 1660
Bme1390I	CCNGG	8 cut(s)	335, 516, 859, 980, 1134, 1211, 1223, 1623
Bme18I	GGWCC	3 cut(s)	413, 512, 1386
BmgT120I	GGNCC	4 cut(s)	413, 484, 512, 1386
BmiI	GGNNCC	3 cut(s)	393, 514, 1074
BmrFI	CCNGG	8 cut(s)	335, 516, 859, 980, 1134, 1211, 1223, 1623
BmsI	GCATC	4 cut(s)	127, 346, 922, 1267
BpiI	GAAGAC	1 cut(s)	1870
Bpu14I	TTCGAA	1 cut(s)	1500
BpuEI	CTTGAG	1 cut(s)	686
BpuMI	CCSGG	1 cut(s)	516
BsaAI	YACGTR	2 cut(s)	10, 706
BsaJI	CCNNGG	4 cut(s)	211, 487, 1210, 1222
BsaWI	WCCGGW	1 cut(s)	920
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	5 cut(s)	141, 401, 709, 820, 1211
Bse118I	RCCGGY	3 cut(s)	709, 920, 1508
Bse1I	ACTGG	3 cut(s)	60, 274, 1543
Bse21I	CCTNAGG	1 cut(s)	1077
Bse3DI	GCAATG	4 cut(s)	393, 761, 909, 1819
BseBI	CCWGG	7 cut(s)	335, 859, 980, 1134, 1211, 1223, 1623
BseDI	CCNNGG	4 cut(s)	211, 487, 1210, 1222
BseGI	GGATG	5 cut(s)	360, 361, 756, 1573, 1600
BseLI	CCNNNNNNNGG	5 cut(s)	141, 401, 709, 820, 1211
BseMI	GCAATG	4 cut(s)	393, 761, 909, 1819
BseMII	CTCAG	2 cut(s)	1068, 1832
BseNI	ACTGG	3 cut(s)	60, 274, 1543
BseRI	GAGGAG	2 cut(s)	683, 1167
BseXI	GCAGC	4 cut(s)	1049, 1078, 1551, 1670
BseYI	CCCAGC	1 cut(s)	140
Bsh1236I	CGCG	1 cut(s)	252
BshFI	GGCC	6 cut(s)	59, 93, 485, 492, 1621, 1698
BshNI	GGYRCC	1 cut(s)	391
BshTI	ACCGGT	1 cut(s)	920
BsiSI	CCGG	4 cut(s)	516, 710, 921, 1509
BslFI	GGGAC	3 cut(s)	157, 498, 1738
BslI	CCNNNNNNNGG	5 cut(s)	141, 401, 709, 820, 1211
BsmAI	GTCTC	2 cut(s)	156, 306
BsmFI	GGGAC	3 cut(s)	157, 498, 1738
BsmI	GAATGC	1 cut(s)	1233
BsnI	GGCC	6 cut(s)	59, 93, 485, 492, 1621, 1698
Bsp119I	TTCGAA	1 cut(s)	1500
Bsp1407I	TGTACA	1 cut(s)	1831
Bsp143I	GATC	7 cut(s)	118, 235, 775, 1099, 1256, 1297, 1376
BspACI	CCGC	5 cut(s)	192, 226, 250, 1175, 1919
BspANI	GGCC	6 cut(s)	59, 93, 485, 492, 1621, 1698
BspCNI	CTCAG	2 cut(s)	1069, 1833
BspFNI	CGCG	1 cut(s)	252
BspLI	GGNNCC	3 cut(s)	393, 514, 1074
BspMI	ACCTGC	1 cut(s)	1031
BspPI	GGATC	5 cut(s)	113, 243, 1107, 1292, 1384
BspQI	GCTCTTC	1 cut(s)	990
BspT104I	TTCGAA	1 cut(s)	1500
BspT107I	GGYRCC	1 cut(s)	391
BspTI	CTTAAG	1 cut(s)	950
BsrBI	CCGCTC	1 cut(s)	226
BsrDI	GCAATG	4 cut(s)	393, 761, 909, 1819
BsrFI	RCCGGY	3 cut(s)	709, 920, 1508
BsrGI	TGTACA	1 cut(s)	1831
BsrI	ACTGG	3 cut(s)	60, 274, 1543
BssAI	RCCGGY	3 cut(s)	709, 920, 1508
BssECI	CCNNGG	4 cut(s)	211, 487, 1210, 1222
BssMI	GATC	7 cut(s)	118, 235, 775, 1099, 1256, 1297, 1376
BssSI	CACGAG	1 cut(s)	1188
BssT1I	CCWWGG	1 cut(s)	487
Bst2BI	CACGAG	1 cut(s)	1188
Bst2UI	CCWGG	7 cut(s)	335, 859, 980, 1134, 1211, 1223, 1623
Bst4CI	ACNGT	3 cut(s)	331, 1399, 1747
Bst6I	CTCTTC	1 cut(s)	990
BstAFI	CTTAAG	1 cut(s)	950
BstAPI	GCANNNNNTGC	2 cut(s)	689, 1184
BstAUI	TGTACA	1 cut(s)	1831
BstBAI	YACGTR	2 cut(s)	10, 706
BstBI	TTCGAA	1 cut(s)	1500
BstC8I	GCNNGC	5 cut(s)	1006, 1510, 1569, 1663, 1667
BstDEI	CTNAG	4 cut(s)	611, 1077, 1645, 1841
BstEII	GGTNACC	1 cut(s)	1043
BstF5I	GGATG	5 cut(s)	360, 361, 756, 1573, 1600
BstFNI	CGCG	1 cut(s)	252
BstH2I	RGCGCY	1 cut(s)	1116
BstHHI	GCGC	2 cut(s)	1115, 1548
BstKTI	GATC	7 cut(s)	121, 238, 778, 1102, 1259, 1300, 1379
BstMAI	GTCTC	2 cut(s)	156, 306
BstMBI	GATC	7 cut(s)	118, 235, 775, 1099, 1256, 1297, 1376
BstMWI	GCNNNNNNNGC	8 cut(s)	592, 689, 791, 975, 1001, 1070, 1184, 1809
BstNI	CCWGG	7 cut(s)	335, 859, 980, 1134, 1211, 1223, 1623
BstNSI	RCATGY	3 cut(s)	995, 1665, 1772
BstPI	GGTNACC	1 cut(s)	1043
BstSCI	CCNGG	8 cut(s)	333, 514, 857, 978, 1132, 1209, 1221, 1621
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	4 cut(s)	1049, 1078, 1551, 1670
BstV2I	GAAGAC	1 cut(s)	1870
BstX2I	RGATCY	2 cut(s)	235, 1099
BstXI	CCANNNNNNTGG	2 cut(s)	750, 1763
BstYI	RGATCY	2 cut(s)	235, 1099
Bsu36I	CCTNAGG	1 cut(s)	1077
BsuRI	GGCC	6 cut(s)	59, 93, 485, 492, 1621, 1698
BtsCI	GGATG	5 cut(s)	360, 361, 756, 1573, 1600
BtsIMutI	CAGTG	1 cut(s)	1752
BveI	ACCTGC	1 cut(s)	1031
Cac8I	GCNNGC	5 cut(s)	1006, 1510, 1569, 1663, 1667
CaiI	CAGNNNCTG	1 cut(s)	1840
CfoI	GCGC	2 cut(s)	1115, 1548
Cfr10I	RCCGGY	3 cut(s)	709, 920, 1508
Cfr13I	GGNCC	4 cut(s)	413, 484, 512, 1386
CseI	GACGC	1 cut(s)	1358
Csp6I	GTAC	7 cut(s)	7, 392, 608, 654, 707, 1579, 1832
CspAI	ACCGGT	1 cut(s)	920
CviAII	CATG	9 cut(s)	164, 536, 788, 884, 992, 1095, 1549, 1662, 1769
CviQI	GTAC	7 cut(s)	7, 392, 608, 654, 707, 1579, 1832
DdeI	CTNAG	4 cut(s)	611, 1077, 1645, 1841
DpnI	GATC	7 cut(s)	120, 237, 777, 1101, 1258, 1299, 1378
DpnII	GATC	7 cut(s)	118, 235, 775, 1099, 1256, 1297, 1376
EaeI	YGGCCR	3 cut(s)	57, 490, 1696
Eam1104I	CTCTTC	1 cut(s)	990
EarI	CTCTTC	1 cut(s)	990
Eco130I	CCWWGG	1 cut(s)	487
Eco32I	GATATC	1 cut(s)	1491
Eco47I	GGWCC	3 cut(s)	413, 512, 1386
Eco57I	CTGAAG	2 cut(s)	800, 1864
Eco81I	CCTNAGG	1 cut(s)	1077
Eco91I	GGTNACC	1 cut(s)	1043
EcoO109I	RGGNCCY	2 cut(s)	484, 1386
EcoO65I	GGTNACC	1 cut(s)	1043
EcoRII	CCWGG	7 cut(s)	333, 857, 978, 1132, 1209, 1221, 1621
EcoRV	GATATC	1 cut(s)	1491
EcoT14I	CCWWGG	1 cut(s)	487
EcoT22I	ATGCAT	1 cut(s)	1774
ErhI	CCWWGG	1 cut(s)	487
FaeI	CATG	9 cut(s)	167, 539, 791, 887, 995, 1098, 1552, 1665, 1772
FaqI	GGGAC	3 cut(s)	157, 498, 1738
FatI	CATG	9 cut(s)	163, 535, 787, 883, 991, 1094, 1548, 1661, 1768
FauI	CCCGC	2 cut(s)	257, 1912
FauNDI	CATATG	1 cut(s)	1353
Fnu4HI	GCNGC	5 cut(s)	1038, 1092, 1176, 1565, 1659
FokI	GGATG	5 cut(s)	347, 368, 743, 1560, 1587
Fsp4HI	GCNGC	5 cut(s)	1038, 1092, 1176, 1565, 1659
FspBI	CTAG	5 cut(s)	641, 828, 1127, 1728, 1866
GlaI	GCGC	2 cut(s)	1114, 1547
GluI	GCNGC	5 cut(s)	1038, 1092, 1176, 1565, 1659
GsaI	CCCAGC	1 cut(s)	144
HaeII	RGCGCY	1 cut(s)	1116
HaeIII	GGCC	6 cut(s)	59, 93, 485, 492, 1621, 1698
HapII	CCGG	4 cut(s)	516, 710, 921, 1509
HgaI	GACGC	1 cut(s)	1358
HhaI	GCGC	2 cut(s)	1115, 1548
Hin1II	CATG	9 cut(s)	167, 539, 791, 887, 995, 1098, 1552, 1665, 1772
Hin6I	GCGC	2 cut(s)	1113, 1546
HinP1I	GCGC	2 cut(s)	1113, 1546
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	4 cut(s)	39, 51, 464, 887
HpaII	CCGG	4 cut(s)	516, 710, 921, 1509
HphI	GGTGA	5 cut(s)	28, 206, 581, 1055, 1157
Hpy166II	GTNNAC	3 cut(s)	38, 202, 400
Hpy188I	TCNGA	8 cut(s)	215, 558, 819, 896, 931, 1014, 1675, 1704
Hpy188III	TCNNGA	8 cut(s)	799, 1076, 1190, 1301, 1481, 1604, 1866, 1882
Hpy8I	GTNNAC	3 cut(s)	38, 202, 400
Hpy99I	CGWCG	1 cut(s)	1014
HpyAV	CCTTC	7 cut(s)	104, 404, 673, 824, 838, 1102, 1641
HpyCH4III	ACNGT	3 cut(s)	331, 1399, 1747
HpyCH4IV	ACGT	4 cut(s)	9, 104, 379, 705
HpyF10VI	GCNNNNNNNGC	8 cut(s)	592, 689, 791, 975, 1001, 1070, 1184, 1809
HpyF3I	CTNAG	4 cut(s)	611, 1077, 1645, 1841
HpySE526I	ACGT	4 cut(s)	9, 104, 379, 705
Hsp92II	CATG	9 cut(s)	167, 539, 791, 887, 995, 1098, 1552, 1665, 1772
HspAI	GCGC	2 cut(s)	1113, 1546
KpnI	GGTACC	1 cut(s)	395
KroI	GCCGGC	1 cut(s)	1508
KroNI	GCCGGC	1 cut(s)	1510
Kzo9I	GATC	7 cut(s)	118, 235, 775, 1099, 1256, 1297, 1376
LguI	GCTCTTC	1 cut(s)	990
LmnI	GCTCC	1 cut(s)	1078
Lsp1109I	GCAGC	4 cut(s)	1049, 1078, 1551, 1670
LweI	GCATC	4 cut(s)	127, 346, 922, 1267
MaeI	CTAG	5 cut(s)	641, 828, 1127, 1728, 1866
MaeII	ACGT	4 cut(s)	9, 104, 379, 705
MaeIII	GTNAC	7 cut(s)	16, 52, 100, 724, 1043, 1057, 1399
MalI	GATC	7 cut(s)	120, 237, 777, 1101, 1258, 1299, 1378
MbiI	CCGCTC	1 cut(s)	226
MboI	GATC	7 cut(s)	118, 235, 775, 1099, 1256, 1297, 1376
MboII	GAAGA	5 cut(s)	71, 977, 1064, 1870, 1946
MflI	RGATCY	2 cut(s)	235, 1099
MlsI	TGGCCA	2 cut(s)	492, 1698
MluNI	TGGCCA	2 cut(s)	492, 1698
MlyI	GAGTC	2 cut(s)	33, 60
MmeI	TCCRAC	2 cut(s)	889, 992
Mox20I	TGGCCA	2 cut(s)	492, 1698
Mph1103I	ATGCAT	1 cut(s)	1774
MroNI	GCCGGC	1 cut(s)	1508
MscI	TGGCCA	2 cut(s)	492, 1698
MseI	TTAA	6 cut(s)	770, 809, 951, 1476, 1611, 1776
MslI	CAYNNNNRTG	2 cut(s)	1467, 1761
Msp20I	TGGCCA	2 cut(s)	492, 1698
MspA1I	CMGCKG	2 cut(s)	419, 1919
MspCI	CTTAAG	1 cut(s)	950
MspI	CCGG	4 cut(s)	516, 710, 921, 1509
MspR9I	CCNGG	8 cut(s)	335, 516, 859, 980, 1134, 1211, 1223, 1623
Mva1269I	GAATGC	1 cut(s)	1233
MvaI	CCWGG	7 cut(s)	335, 859, 980, 1134, 1211, 1223, 1623
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	8 cut(s)	592, 689, 791, 975, 1001, 1070, 1184, 1809
NaeI	GCCGGC	1 cut(s)	1510
NciI	CCSGG	1 cut(s)	516
NdeI	CATATG	1 cut(s)	1353
NdeII	GATC	7 cut(s)	118, 235, 775, 1099, 1256, 1297, 1376
NgoMIV	GCCGGC	1 cut(s)	1508
NlaIII	CATG	9 cut(s)	167, 539, 791, 887, 995, 1098, 1552, 1665, 1772
NlaIV	GGNNCC	3 cut(s)	393, 514, 1074
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	4 cut(s)	16, 52, 724, 1043
NsiI	ATGCAT	1 cut(s)	1774
NspI	RCATGY	3 cut(s)	995, 1665, 1772
NspV	TTCGAA	1 cut(s)	1500
PaeI	GCATGC	1 cut(s)	1665
PaqCI	CACCTGC	1 cut(s)	1031
PciSI	GCTCTTC	1 cut(s)	990
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PctI	GAATGC	1 cut(s)	1233
PdiI	GCCGGC	1 cut(s)	1510
PfeI	GAWTC	2 cut(s)	464, 887
PflFI	GACNNNGTC	1 cut(s)	148
PfoI	TCCNGGA	2 cut(s)	514, 1132
PinAI	ACCGGT	1 cut(s)	920
PkrI	GCNGC	5 cut(s)	1039, 1093, 1177, 1566, 1660
PleI	GAGTC	2 cut(s)	33, 59
PpsI	GAGTC	2 cut(s)	33, 59
Ppu21I	YACGTR	2 cut(s)	10, 706
PpuMI	RGGWCCY	1 cut(s)	1386
Psp5II	RGGWCCY	1 cut(s)	1386
Psp6I	CCWGG	7 cut(s)	333, 857, 978, 1132, 1209, 1221, 1621
PspEI	GGTNACC	1 cut(s)	1043
PspFI	CCCAGC	1 cut(s)	140
PspGI	CCWGG	7 cut(s)	333, 857, 978, 1132, 1209, 1221, 1621
PspN4I	GGNNCC	3 cut(s)	393, 514, 1074
PspPI	GGNCC	4 cut(s)	413, 484, 512, 1386
PspPPI	RGGWCCY	1 cut(s)	1386
PstNI	CAGNNNCTG	1 cut(s)	1840
PsuI	RGATCY	2 cut(s)	235, 1099
PsyI	GACNNNGTC	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	7 cut(s)	8, 393, 609, 655, 708, 1580, 1833
RsaNI	GTAC	7 cut(s)	7, 392, 608, 654, 707, 1579, 1832
RseI	CAYNNNNRTG	2 cut(s)	1467, 1761
SapI	GCTCTTC	1 cut(s)	990
SaqAI	TTAA	6 cut(s)	770, 809, 951, 1476, 1611, 1776
SatI	GCNGC	5 cut(s)	1038, 1092, 1176, 1565, 1659
Sau3AI	GATC	7 cut(s)	118, 235, 775, 1099, 1256, 1297, 1376
Sau96I	GGNCC	4 cut(s)	413, 484, 512, 1386
SchI	GAGTC	2 cut(s)	33, 60
ScrFI	CCNGG	8 cut(s)	335, 516, 859, 980, 1134, 1211, 1223, 1623
SfaNI	GCATC	4 cut(s)	127, 346, 922, 1267
SfuI	TTCGAA	1 cut(s)	1500
SinI	GGWCC	3 cut(s)	413, 512, 1386
SmiMI	CAYNNNNRTG	2 cut(s)	1467, 1761
SmlI	CTYRAG	2 cut(s)	665, 950
SmoI	CTYRAG	2 cut(s)	665, 950
SpeI	ACTAGT	1 cut(s)	1727
SphI	GCATGC	1 cut(s)	1665
SsiI	CCGC	5 cut(s)	192, 226, 250, 1175, 1919
SspI	AATATT	3 cut(s)	637, 721, 963
SspMI	CTAG	5 cut(s)	641, 828, 1127, 1728, 1866
StyD4I	CCNGG	8 cut(s)	333, 514, 857, 978, 1132, 1209, 1221, 1621
StyI	CCWWGG	1 cut(s)	487
TaaI	ACNGT	3 cut(s)	331, 1399, 1747
TaiI	ACGT	4 cut(s)	12, 107, 382, 708
TaqI	TCGA	3 cut(s)	435, 1459, 1500
TatI	WGTACW	2 cut(s)	653, 1831
TauI	GCSGC	1 cut(s)	1178
TfiI	GAWTC	2 cut(s)	464, 887
Tru1I	TTAA	6 cut(s)	770, 809, 951, 1476, 1611, 1776
Tru9I	TTAA	6 cut(s)	770, 809, 951, 1476, 1611, 1776
TscAI	CASTG	1 cut(s)	1752
TseFI	GTSAC	4 cut(s)	16, 52, 724, 1043
TseI	GCWGC	4 cut(s)	1037, 1091, 1564, 1658
Tsp45I	GTSAC	4 cut(s)	16, 52, 724, 1043
TspDTI	ATGAA	6 cut(s)	17, 524, 804, 1073, 1464, 1548
TspGWI	ACGGA	3 cut(s)	368, 1304, 1566
TspRI	CASTG	1 cut(s)	1752
Tth111I	GACNNNGTC	1 cut(s)	148
Vha464I	CTTAAG	1 cut(s)	950
VpaK11BI	GGWCC	3 cut(s)	413, 512, 1386
XapI	RAATTY	7 cut(s)	276, 520, 838, 867, 877, 1167, 1607
XbaI	TCTAGA	1 cut(s)	1865
XceI	RCATGY	3 cut(s)	995, 1665, 1772
XspI	CTAG	5 cut(s)	641, 828, 1127, 1728, 1866
Zsp2I	ATGCAT	1 cut(s)	1774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.