Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00221

Orthogroup ID

OG0009776

Physical Location & Seq

Genomic Coordinates Reverse (-)

9716 .. 15198

Gene Structure 5483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G005550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1785 bp

ATGAAGTACGTGTTGGTGACGGGTGGTGTTGTTAGTGGACTCGGCAAAGGAGTCACGGCCAGTAGTATTGGATTGCTTCTTCAAGCTTGTGGCCTTCGTGTTACGTCAATCAAAATTGATCCTTACTTGAACACCGATGCTGGGACAATGTCTCCTTTTGAGCATGGGGAAGTGTTCGTATTAGACGATGGCGGTGAGGTTGACCTTGACCTCGGAAATTATGAGCGGTTTCTGGATCTCACTTTGACCCGCGACAACAATATCACAACTGGCAAAATTTATCAGTCTGTTATTGACAAGGAGAGAAAGGGAGACTATCTTGGAAAGACTGTCCAGGTTGTTCCTCACATTACGGATGCCATCCAAGAGTGGATAGAACGTGTGGCAATGGTACCTGTGGACGGGAAAGAAGGTCCAGCTGATGTATGTGTCATCGAATTGGGTGGAACTATAGGGGATATTGAATCAATGCCCTTTATTGAGGCTCTTGGCCAATTTTCTTATCGTGTTGGTCCCGGAAATTTCTGCTTGGTTCATGTCAGCCTTGTGCCTGTTCTGAATGTTGTCGGTGAGCAGAAAACAAAGCCTACACAGCATAGTGTTCGGGTACTTAGAGGACAGGGTTTGACACCTAATATTCTAGCTTGTAGGAGTACAAAGCCACTTGAGGAGAATGTGAAGGCAAAACTTGCTCAATTTTGCCACGTACCGGCAGAAAATATTGTCACTCTTTATGATGTTCCAAACATCTGGCACATCCCATTGCTTTTAAGAGATCAAAAGGCACATGAAGCAATCTTGAAAGAATTAAACCTTCAGAGGGTTGCTAGAGAGCCAAATTTGAAGGAATGGACAACCAGGACAGAAATTTCCTCAAATTTACATGATTCTGTCAGAATTGCAATGGTTGGAAAATACACCGGTCTTTCAGATGCTTACCTCTCTGTTCTAAAGGCTCTTCTACATGCTTCTGTTGCTTGCCGTCGGAAACTTGTTGTAGATTGGGTTGCAGCAGGTGACCTTGAAGATGTTACTGCTAAAGAGGCTCCTGAGGTTCATAAGGCTGCATGGGATCTTTTGAAGGGCGCTGATGGTGTTCTAGTTCCAGGAGGATTTGGTGATAGAGGAGTGCAAGGGAAAATTCTTGCGGCAAAGTATGCTCGTGAAAACAAGTTCCATTCCTGGGCATTTGCCTGGGAATGCAAATTGCTGTTATTGAGTTTGCACGATCTGTTCTTGGTATGCTTGATGCTAACAGCACGGAGGTTCAAAAACACATATGGAGGCACTATGCGTCTGGGATCAAGGAGGACCTACTTCACGGTTACTGACTGCAAATCTGCAAATTCTGATATTGTTATGGATTATGTTAGGTATGGAGATGTGGCGTTTGTTGATGAACGACATCGACATAGATATGAGGTCAATCCTGATATGATATCGCAATTCGAAATTGCCGGCTTATCATTTGTTGGCAGAGATGAAACTGGTCGGCGCATGGAGATTATTGAGCTGCCTGCCCATCCGTACTTTGTTGGTGTTCAGTTCCATCCCGAATTTAAGTCAAGGCCAGGCAAACCTTCTGCTCTGTTCTTAGGACTAATAGCAGCATGCAGGCGTTCAGATACAATCCTACAAAACAATGGCCATCTGATAAAGCCTGTTGCAAATGGGACTAGTAATGGACACTTCACAGTGAAATCCCACCAGAATGGACATGCATTTAAGTCATCAAATGGGTGTCTAAATGGCGTGTATAGCAATGGTAATGGCGTGCACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003883 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006241 GO:0006629 GO:0006644 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009208 GO:0009209 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019856 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0046036 GO:0046112 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

CTP_synth_N GATase

Protein Analysis

594

Amino Acids

65.5

Weight (kDa)

7.64

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_synth_N	PF06418	2 - 272	6.2e-123	CTP synthase N-terminus
GATase	PF00117	310 - 391	4.7e-06	Glutamine amidotransferase class-I
GATase	PF00117	431 - 535	2.2e-13	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12670
fragaria_vesca	FvH4_3g13560 FvH4_3g13560
malus_domestica	MD10G1220500.v1.1
prunus_persica	Prupe.4G123800_v2.0.a1 Prupe.4G123800_v2.0.a1 Prupe.4G123800_v2.0.a1
pyrus_communis	pycom05g21760 pycom10g18630
rosa_chinensis	RchiOBHm_Chr5g0022521
rosa_laevigata	RLG00000032668
rosa_multiflora	Rmu_sc0011329.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056530
rosa_rugosa	Rorug05G0074500 Rorug05G0074600
rosa_samantha	Rh5AG161300 Rh5BG160200 Rh5CG174600 Rh5DG160900
rosa_wichuraiana	Rw0G005550 Rw5G014380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1004
Acc36I	ACCTGC	1 cut(s)	1004
Acc65I	GGTACC	1 cut(s)	391
AccB1I	GGYRCC	1 cut(s)	391
AccBSI	CCGCTC	1 cut(s)	226
AccII	CGCG	1 cut(s)	252
AciI	CCGC	4 cut(s)	192, 226, 250, 1148
AclWI	GGATC	4 cut(s)	113, 243, 1080, 1309
AcoI	YGGCCR	3 cut(s)	57, 490, 1645
AcsI	RAATTY	8 cut(s)	276, 520, 838, 867, 877, 1140, 1345, 1556
AcuI	CTGAAG	1 cut(s)	800
AfaI	GTAC	6 cut(s)	8, 393, 609, 655, 708, 1529
AfiI	CCNNNNNNNGG	5 cut(s)	141, 401, 709, 820, 1183
AflIII	ACRYGT	2 cut(s)	9, 379
AgeI	ACCGGT	1 cut(s)	920
AgsI	TTSAA	8 cut(s)	83, 130, 464, 802, 844, 1025, 1081, 1270
AhlI	ACTAGT	1 cut(s)	1676
AjnI	CCWGG	6 cut(s)	333, 857, 1105, 1181, 1193, 1570
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	4 cut(s)	86, 419, 644, 1513
AluI	AGCT	4 cut(s)	86, 419, 644, 1513
Alw21I	GWGCWC	1 cut(s)	1779
Alw26I	GTCTC	2 cut(s)	156, 306
Alw44I	GTGCAC	1 cut(s)	1775
AlwI	GGATC	4 cut(s)	113, 243, 1080, 1309
AoxI	GGCC	5 cut(s)	57, 91, 490, 1568, 1645
ApaLI	GTGCAC	1 cut(s)	1775
ApeKI	GCWGC	4 cut(s)	1010, 1064, 1513, 1607
ApoI	RAATTY	8 cut(s)	276, 520, 838, 867, 877, 1140, 1345, 1556
AsiGI	ACCGGT	1 cut(s)	920
Asp718I	GGTACC	1 cut(s)	391
AspLEI	GCGC	2 cut(s)	1088, 1497
AspS9I	GGNCC	3 cut(s)	413, 512, 1311
AsuC2I	CCSGG	1 cut(s)	516
AsuHPI	GGTGA	5 cut(s)	28, 206, 581, 1028, 1130
AsuII	TTCGAA	1 cut(s)	1449
AvaII	GGWCC	3 cut(s)	413, 512, 1311
AxyI	CCTNAGG	1 cut(s)	1050
BaeGI	GKGCMC	1 cut(s)	1779
BalI	TGGCCA	2 cut(s)	492, 1647
BanI	GGYRCC	1 cut(s)	391
BauI	CACGAG	1 cut(s)	1161
Bbv12I	GWGCWC	1 cut(s)	1779
BbvI	GCAGC	4 cut(s)	1022, 1051, 1500, 1619
BccI	CCATC	6 cut(s)	182, 368, 1085, 1530, 1557, 1656
BceAI	ACGGC	2 cut(s)	72, 966
BcgI	CGANNNNNNTGC	2 cut(s)	584, 618
BciT130I	CCWGG	6 cut(s)	335, 859, 1107, 1183, 1195, 1572
BcnI	CCSGG	1 cut(s)	516
BcoDI	GTCTC	2 cut(s)	156, 306
BcuI	ACTAGT	1 cut(s)	1676
BfaI	CTAG	4 cut(s)	641, 828, 1100, 1677
BfmI	CTRYAG	1 cut(s)	450
BfoI	RGCGCY	1 cut(s)	1089
BfuAI	ACCTGC	1 cut(s)	1004
BisI	GCNGC	5 cut(s)	1011, 1065, 1149, 1514, 1608
BlsI	GCNGC	5 cut(s)	1012, 1066, 1150, 1515, 1609
Bme1390I	CCNGG	7 cut(s)	335, 516, 859, 1107, 1183, 1195, 1572
Bme18I	GGWCC	3 cut(s)	413, 512, 1311
BmgT120I	GGNCC	3 cut(s)	413, 512, 1311
BmiI	GGNNCC	3 cut(s)	393, 514, 1047
BmrFI	CCNGG	7 cut(s)	335, 516, 859, 1107, 1183, 1195, 1572
BmsI	GCATC	4 cut(s)	127, 346, 922, 1239
Bpu14I	TTCGAA	1 cut(s)	1449
BpuEI	CTTGAG	1 cut(s)	686
BpuMI	CCSGG	1 cut(s)	516
BsaAI	YACGTR	2 cut(s)	10, 706
BsaJI	CCNNGG	3 cut(s)	211, 1182, 1194
BsaWI	WCCGGW	1 cut(s)	920
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	5 cut(s)	141, 401, 709, 820, 1183
Bse118I	RCCGGY	3 cut(s)	709, 920, 1457
Bse1I	ACTGG	3 cut(s)	60, 274, 1492
Bse21I	CCTNAGG	1 cut(s)	1050
Bse3DI	GCAATG	4 cut(s)	393, 761, 909, 1768
BseBI	CCWGG	6 cut(s)	335, 859, 1107, 1183, 1195, 1572
BseDI	CCNNGG	3 cut(s)	211, 1182, 1194
BseGI	GGATG	5 cut(s)	360, 361, 756, 1522, 1549
BseLI	CCNNNNNNNGG	5 cut(s)	141, 401, 709, 820, 1183
BseMI	GCAATG	4 cut(s)	393, 761, 909, 1768
BseMII	CTCAG	1 cut(s)	1041
BseNI	ACTGG	3 cut(s)	60, 274, 1492
BseRI	GAGGAG	2 cut(s)	683, 1140
BseSI	GKGCMC	1 cut(s)	1779
BseXI	GCAGC	4 cut(s)	1022, 1051, 1500, 1619
BseYI	CCCAGC	1 cut(s)	140
Bsh1236I	CGCG	1 cut(s)	252
BshFI	GGCC	5 cut(s)	59, 93, 492, 1570, 1647
BshNI	GGYRCC	1 cut(s)	391
BshTI	ACCGGT	1 cut(s)	920
BsiHKAI	GWGCWC	1 cut(s)	1779
BsiSI	CCGG	4 cut(s)	516, 710, 921, 1458
BslFI	GGGAC	3 cut(s)	157, 498, 1687
BslI	CCNNNNNNNGG	5 cut(s)	141, 401, 709, 820, 1183
BsmAI	GTCTC	2 cut(s)	156, 306
BsmFI	GGGAC	3 cut(s)	157, 498, 1687
BsmI	GAATGC	1 cut(s)	1205
BsnI	GGCC	5 cut(s)	59, 93, 492, 1570, 1647
Bsp119I	TTCGAA	1 cut(s)	1449
Bsp1286I	GDGCHC	1 cut(s)	1779
Bsp143I	GATC	6 cut(s)	118, 235, 775, 1072, 1228, 1301
BspACI	CCGC	4 cut(s)	192, 226, 250, 1148
BspANI	GGCC	5 cut(s)	59, 93, 492, 1570, 1647
BspCNI	CTCAG	1 cut(s)	1042
BspFNI	CGCG	1 cut(s)	252
BspLI	GGNNCC	3 cut(s)	393, 514, 1047
BspMI	ACCTGC	1 cut(s)	1004
BspPI	GGATC	4 cut(s)	113, 243, 1080, 1309
BspQI	GCTCTTC	1 cut(s)	963
BspT104I	TTCGAA	1 cut(s)	1449
BspT107I	GGYRCC	1 cut(s)	391
BsrBI	CCGCTC	1 cut(s)	226
BsrDI	GCAATG	4 cut(s)	393, 761, 909, 1768
BsrFI	RCCGGY	3 cut(s)	709, 920, 1457
BsrI	ACTGG	3 cut(s)	60, 274, 1492
BssAI	RCCGGY	3 cut(s)	709, 920, 1457
BssECI	CCNNGG	3 cut(s)	211, 1182, 1194
BssMI	GATC	6 cut(s)	118, 235, 775, 1072, 1228, 1301
BssSI	CACGAG	1 cut(s)	1161
Bst2BI	CACGAG	1 cut(s)	1161
Bst2UI	CCWGG	6 cut(s)	335, 859, 1107, 1183, 1195, 1572
Bst4CI	ACNGT	3 cut(s)	331, 1324, 1696
Bst6I	CTCTTC	1 cut(s)	963
BstAPI	GCANNNNNTGC	2 cut(s)	689, 1157
BstBAI	YACGTR	2 cut(s)	10, 706
BstBI	TTCGAA	1 cut(s)	1449
BstC8I	GCNNGC	6 cut(s)	979, 1459, 1518, 1612, 1616, 1775
BstDEI	CTNAG	3 cut(s)	611, 1050, 1594
BstEII	GGTNACC	1 cut(s)	1016
BstF5I	GGATG	5 cut(s)	360, 361, 756, 1522, 1549
BstFNI	CGCG	1 cut(s)	252
BstH2I	RGCGCY	1 cut(s)	1089
BstHHI	GCGC	2 cut(s)	1088, 1497
BstKTI	GATC	6 cut(s)	121, 238, 778, 1075, 1231, 1304
BstMAI	GTCTC	2 cut(s)	156, 306
BstMBI	GATC	6 cut(s)	118, 235, 775, 1072, 1228, 1301
BstMWI	GCNNNNNNNGC	7 cut(s)	592, 689, 791, 974, 1043, 1157, 1758
BstNI	CCWGG	6 cut(s)	335, 859, 1107, 1183, 1195, 1572
BstNSI	RCATGY	3 cut(s)	968, 1614, 1721
BstPI	GGTNACC	1 cut(s)	1016
BstSCI	CCNGG	7 cut(s)	333, 514, 857, 1105, 1181, 1193, 1570
BstSFI	CTRYAG	1 cut(s)	450
BstSLI	GKGCMC	1 cut(s)	1779
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	4 cut(s)	1022, 1051, 1500, 1619
BstX2I	RGATCY	2 cut(s)	235, 1072
BstXI	CCANNNNNNTGG	2 cut(s)	750, 1712
BstYI	RGATCY	2 cut(s)	235, 1072
Bsu36I	CCTNAGG	1 cut(s)	1050
BsuRI	GGCC	5 cut(s)	59, 93, 492, 1570, 1647
BtsCI	GGATG	5 cut(s)	360, 361, 756, 1522, 1549
BtsIMutI	CAGTG	1 cut(s)	1701
BveI	ACCTGC	1 cut(s)	1004
Cac8I	GCNNGC	6 cut(s)	979, 1459, 1518, 1612, 1616, 1775
CfoI	GCGC	2 cut(s)	1088, 1497
Cfr10I	RCCGGY	3 cut(s)	709, 920, 1457
Cfr13I	GGNCC	3 cut(s)	413, 512, 1311
CseI	GACGC	1 cut(s)	1283
Csp6I	GTAC	6 cut(s)	7, 392, 608, 654, 707, 1528
CspAI	ACCGGT	1 cut(s)	920
CviAII	CATG	9 cut(s)	164, 536, 788, 884, 965, 1068, 1498, 1611, 1718
CviQI	GTAC	6 cut(s)	7, 392, 608, 654, 707, 1528
DdeI	CTNAG	3 cut(s)	611, 1050, 1594
DpnI	GATC	6 cut(s)	120, 237, 777, 1074, 1230, 1303
DpnII	GATC	6 cut(s)	118, 235, 775, 1072, 1228, 1301
EaeI	YGGCCR	3 cut(s)	57, 490, 1645
Eam1104I	CTCTTC	1 cut(s)	963
EarI	CTCTTC	1 cut(s)	963
Eco32I	GATATC	1 cut(s)	1440
Eco47I	GGWCC	3 cut(s)	413, 512, 1311
Eco57I	CTGAAG	1 cut(s)	800
Eco81I	CCTNAGG	1 cut(s)	1050
Eco91I	GGTNACC	1 cut(s)	1016
EcoO109I	RGGNCCY	1 cut(s)	1311
EcoO65I	GGTNACC	1 cut(s)	1016
EcoRII	CCWGG	6 cut(s)	333, 857, 1105, 1181, 1193, 1570
EcoRV	GATATC	1 cut(s)	1440
EcoT22I	ATGCAT	1 cut(s)	1723
FaeI	CATG	9 cut(s)	167, 539, 791, 887, 968, 1071, 1501, 1614, 1721
FaqI	GGGAC	3 cut(s)	157, 498, 1687
FatI	CATG	9 cut(s)	163, 535, 787, 883, 964, 1067, 1497, 1610, 1717
FauI	CCCGC	1 cut(s)	257
FauNDI	CATATG	1 cut(s)	1279
Fnu4HI	GCNGC	5 cut(s)	1011, 1065, 1149, 1514, 1608
FokI	GGATG	5 cut(s)	347, 368, 743, 1509, 1536
Fsp4HI	GCNGC	5 cut(s)	1011, 1065, 1149, 1514, 1608
FspBI	CTAG	4 cut(s)	641, 828, 1100, 1677
GlaI	GCGC	2 cut(s)	1087, 1496
GluI	GCNGC	5 cut(s)	1011, 1065, 1149, 1514, 1608
GsaI	CCCAGC	1 cut(s)	144
HaeII	RGCGCY	1 cut(s)	1089
HaeIII	GGCC	5 cut(s)	59, 93, 492, 1570, 1647
HapII	CCGG	4 cut(s)	516, 710, 921, 1458
HgaI	GACGC	1 cut(s)	1283
HhaI	GCGC	2 cut(s)	1088, 1497
Hin1II	CATG	9 cut(s)	167, 539, 791, 887, 968, 1071, 1501, 1614, 1721
Hin6I	GCGC	2 cut(s)	1086, 1495
HinP1I	GCGC	2 cut(s)	1086, 1495
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	4 cut(s)	39, 51, 464, 887
HpaII	CCGG	4 cut(s)	516, 710, 921, 1458
HphI	GGTGA	5 cut(s)	28, 206, 581, 1028, 1130
Hpy166II	GTNNAC	4 cut(s)	38, 202, 400, 1777
Hpy188I	TCNGA	9 cut(s)	215, 558, 819, 896, 931, 987, 1351, 1624, 1653
Hpy188III	TCNNGA	6 cut(s)	233, 799, 1049, 1163, 1430, 1553
Hpy8I	GTNNAC	4 cut(s)	38, 202, 400, 1777
Hpy99I	CGWCG	1 cut(s)	987
HpyAV	CCTTC	7 cut(s)	104, 404, 673, 824, 838, 1075, 1590
HpyCH4III	ACNGT	3 cut(s)	331, 1324, 1696
HpyCH4IV	ACGT	4 cut(s)	9, 104, 379, 705
HpyF10VI	GCNNNNNNNGC	7 cut(s)	592, 689, 791, 974, 1043, 1157, 1758
HpyF3I	CTNAG	3 cut(s)	611, 1050, 1594
HpySE526I	ACGT	4 cut(s)	9, 104, 379, 705
Hsp92II	CATG	9 cut(s)	167, 539, 791, 887, 968, 1071, 1501, 1614, 1721
HspAI	GCGC	2 cut(s)	1086, 1495
KpnI	GGTACC	1 cut(s)	395
KroI	GCCGGC	1 cut(s)	1457
KroNI	GCCGGC	1 cut(s)	1459
Kzo9I	GATC	6 cut(s)	118, 235, 775, 1072, 1228, 1301
LguI	GCTCTTC	1 cut(s)	963
LmnI	GCTCC	1 cut(s)	1051
Lsp1109I	GCAGC	4 cut(s)	1022, 1051, 1500, 1619
LweI	GCATC	4 cut(s)	127, 346, 922, 1239
MaeI	CTAG	4 cut(s)	641, 828, 1100, 1677
MaeII	ACGT	4 cut(s)	9, 104, 379, 705
MaeIII	GTNAC	7 cut(s)	16, 52, 100, 724, 1016, 1030, 1324
MalI	GATC	6 cut(s)	120, 237, 777, 1074, 1230, 1303
MbiI	CCGCTC	1 cut(s)	226
MboI	GATC	6 cut(s)	118, 235, 775, 1072, 1228, 1301
MboII	GAAGA	3 cut(s)	71, 950, 1037
MflI	RGATCY	2 cut(s)	235, 1072
MhlI	GDGCHC	1 cut(s)	1779
MlsI	TGGCCA	2 cut(s)	492, 1647
MluNI	TGGCCA	2 cut(s)	492, 1647
MlyI	GAGTC	2 cut(s)	33, 60
MmeI	TCCRAC	2 cut(s)	889, 965
Mox20I	TGGCCA	2 cut(s)	492, 1647
Mph1103I	ATGCAT	1 cut(s)	1723
MroNI	GCCGGC	1 cut(s)	1457
MscI	TGGCCA	2 cut(s)	492, 1647
MseI	TTAA	4 cut(s)	770, 809, 1560, 1725
MslI	CAYNNNNRTG	2 cut(s)	1416, 1710
Msp20I	TGGCCA	2 cut(s)	492, 1647
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	4 cut(s)	516, 710, 921, 1458
MspR9I	CCNGG	7 cut(s)	335, 516, 859, 1107, 1183, 1195, 1572
Mva1269I	GAATGC	1 cut(s)	1205
MvaI	CCWGG	6 cut(s)	335, 859, 1107, 1183, 1195, 1572
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	7 cut(s)	592, 689, 791, 974, 1043, 1157, 1758
NaeI	GCCGGC	1 cut(s)	1459
NciI	CCSGG	1 cut(s)	516
NdeI	CATATG	1 cut(s)	1279
NdeII	GATC	6 cut(s)	118, 235, 775, 1072, 1228, 1301
NgoMIV	GCCGGC	1 cut(s)	1457
NlaIII	CATG	9 cut(s)	167, 539, 791, 887, 968, 1071, 1501, 1614, 1721
NlaIV	GGNNCC	3 cut(s)	393, 514, 1047
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	4 cut(s)	16, 52, 724, 1016
NsiI	ATGCAT	1 cut(s)	1723
NspI	RCATGY	3 cut(s)	968, 1614, 1721
NspV	TTCGAA	1 cut(s)	1449
PaeI	GCATGC	1 cut(s)	1614
PaqCI	CACCTGC	1 cut(s)	1004
PciSI	GCTCTTC	1 cut(s)	963
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PctI	GAATGC	1 cut(s)	1205
PdiI	GCCGGC	1 cut(s)	1459
PfeI	GAWTC	2 cut(s)	464, 887
PflFI	GACNNNGTC	1 cut(s)	148
PfoI	TCCNGGA	2 cut(s)	514, 1105
PinAI	ACCGGT	1 cut(s)	920
PkrI	GCNGC	5 cut(s)	1012, 1066, 1150, 1515, 1609
PleI	GAGTC	2 cut(s)	33, 59
PpsI	GAGTC	2 cut(s)	33, 59
Ppu21I	YACGTR	2 cut(s)	10, 706
PpuMI	RGGWCCY	1 cut(s)	1311
Psp5II	RGGWCCY	1 cut(s)	1311
Psp6I	CCWGG	6 cut(s)	333, 857, 1105, 1181, 1193, 1570
PspEI	GGTNACC	1 cut(s)	1016
PspFI	CCCAGC	1 cut(s)	140
PspGI	CCWGG	6 cut(s)	333, 857, 1105, 1181, 1193, 1570
PspN4I	GGNNCC	3 cut(s)	393, 514, 1047
PspPI	GGNCC	3 cut(s)	413, 512, 1311
PspPPI	RGGWCCY	1 cut(s)	1311
PsuI	RGATCY	2 cut(s)	235, 1072
PsyI	GACNNNGTC	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	6 cut(s)	8, 393, 609, 655, 708, 1529
RsaNI	GTAC	6 cut(s)	7, 392, 608, 654, 707, 1528
RseI	CAYNNNNRTG	2 cut(s)	1416, 1710
SapI	GCTCTTC	1 cut(s)	963
SaqAI	TTAA	4 cut(s)	770, 809, 1560, 1725
SatI	GCNGC	5 cut(s)	1011, 1065, 1149, 1514, 1608
Sau3AI	GATC	6 cut(s)	118, 235, 775, 1072, 1228, 1301
Sau96I	GGNCC	3 cut(s)	413, 512, 1311
SchI	GAGTC	2 cut(s)	33, 60
ScrFI	CCNGG	7 cut(s)	335, 516, 859, 1107, 1183, 1195, 1572
SduI	GDGCHC	1 cut(s)	1779
SfaNI	GCATC	4 cut(s)	127, 346, 922, 1239
SfcI	CTRYAG	1 cut(s)	450
SfuI	TTCGAA	1 cut(s)	1449
SinI	GGWCC	3 cut(s)	413, 512, 1311
SmiMI	CAYNNNNRTG	2 cut(s)	1416, 1710
SmlI	CTYRAG	1 cut(s)	665
SmoI	CTYRAG	1 cut(s)	665
SpeI	ACTAGT	1 cut(s)	1676
SphI	GCATGC	1 cut(s)	1614
SsiI	CCGC	4 cut(s)	192, 226, 250, 1148
SspI	AATATT	2 cut(s)	637, 721
SspMI	CTAG	4 cut(s)	641, 828, 1100, 1677
StyD4I	CCNGG	7 cut(s)	333, 514, 857, 1105, 1181, 1193, 1570
TaaI	ACNGT	3 cut(s)	331, 1324, 1696
TaiI	ACGT	4 cut(s)	12, 107, 382, 708
TaqI	TCGA	3 cut(s)	435, 1408, 1449
TatI	WGTACW	1 cut(s)	653
TauI	GCSGC	1 cut(s)	1151
TfiI	GAWTC	2 cut(s)	464, 887
Tru1I	TTAA	4 cut(s)	770, 809, 1560, 1725
Tru9I	TTAA	4 cut(s)	770, 809, 1560, 1725
TscAI	CASTG	1 cut(s)	1701
TseFI	GTSAC	4 cut(s)	16, 52, 724, 1016
TseI	GCWGC	4 cut(s)	1010, 1064, 1513, 1607
Tsp45I	GTSAC	4 cut(s)	16, 52, 724, 1016
TspDTI	ATGAA	6 cut(s)	17, 524, 804, 1046, 1413, 1497
TspGWI	ACGGA	3 cut(s)	368, 1276, 1515
TspRI	CASTG	1 cut(s)	1701
Tth111I	GACNNNGTC	1 cut(s)	148
VneI	GTGCAC	1 cut(s)	1775
VpaK11BI	GGWCC	3 cut(s)	413, 512, 1311
XapI	RAATTY	8 cut(s)	276, 520, 838, 867, 877, 1140, 1345, 1556
XceI	RCATGY	3 cut(s)	968, 1614, 1721
XspI	CTAG	4 cut(s)	641, 828, 1100, 1677
Zsp2I	ATGCAT	1 cut(s)	1723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.