Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009776

Physical Location & Seq

Genomic Coordinates Reverse (-)

6421344 .. 6422766

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0074600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGAAGTTGGTTTTCCGGTAAACGCAATCAGATTCAAGACAAAAGGATTTTTCTATCAAGGAGAACGTAAAGTGAAATTTTTGGAATTCAGGAAACCCAAGGATCCTGCCGTGCAGAAGAGAGCTCGGAAGACCATGCGGGATTTAAAATCATGGGCCAATAGGCTGGCTGAAGGTAAATATAGACTTTGGCTGGGTATAGCAGCGACAAAATATCCACCTGACGCACCAAAGTTGAAATGGTTGGAGCCGAAATTAGAGGGGGTAAGAACTGGTGTGATTACACCCGAGACAATCAGGGATGATCTAGTTAATGCTGTCCTTGAGAGAATGAACGAAGATGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003883 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006241 GO:0006629 GO:0006644 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009208 GO:0009209 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019856 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0046036 GO:0046112 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

CTP_synth_N GATase

Protein Analysis

116

Amino Acids

13.55

Weight (kDa)

9.84

Isoelectric Point (pI)

19.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12670
fragaria_vesca	FvH4_3g13560 FvH4_3g13560
malus_domestica	MD10G1220500.v1.1
prunus_persica	Prupe.4G123800_v2.0.a1 Prupe.4G123800_v2.0.a1 Prupe.4G123800_v2.0.a1
pyrus_communis	pycom05g21760 pycom10g18630
rosa_chinensis	RchiOBHm_Chr5g0022521
rosa_laevigata	RLG00000032668
rosa_multiflora	Rmu_sc0011329.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056530
rosa_rugosa	Rorug05G0074500 Rorug05G0074600
rosa_samantha	Rh5AG161300 Rh5BG160200 Rh5CG174600 Rh5DG160900
rosa_wichuraiana	Rw0G005550 Rw5G014380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	2 cut(s)	98, 111
AcsI	RAATTY	2 cut(s)	77, 86
AcuI	CTGAAG	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	37, 238
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	284
AlwI	GGATC	2 cut(s)	98, 111
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	2 cut(s)	77, 86
AspS9I	GGNCC	1 cut(s)	156
AvaI	CYCGRG	1 cut(s)	287
BamHI	GGATCC	1 cut(s)	103
BanII	GRGCYC	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	215
BceAI	ACGGC	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	1 cut(s)	308
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	156
BmiI	GGNNCC	2 cut(s)	105, 249
BpiI	GAAGAC	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	99
BsaWI	WCCGGW	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	307
BseNI	ACTGG	1 cut(s)	277
BseXI	GCAGC	1 cut(s)	215
BseYI	CCCAGC	1 cut(s)	193
BsgI	GTGCAG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	127
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	158
BsoBI	CYCGRG	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	2 cut(s)	103, 304
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	1 cut(s)	158
BspLI	GGNNCC	2 cut(s)	105, 249
BspPI	GGATC	2 cut(s)	98, 111
BsrI	ACTGG	1 cut(s)	277
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	2 cut(s)	103, 304
BssT1I	CCWWGG	1 cut(s)	99
Bst6I	CTCTTC	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	2 cut(s)	106, 307
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	2 cut(s)	103, 304
BstV1I	GCAGC	1 cut(s)	215
BstV2I	GAAGAC	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	103
BstXI	CCANNNNNNTGG	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	156
CseI	GACGC	1 cut(s)	233
CviAII	CATG	2 cut(s)	136, 153
CviJI	RGCY	6 cut(s)	125, 158, 166, 170, 193, 250
CviKI_1	RGCY	6 cut(s)	125, 158, 166, 170, 193, 250
DpnI	GATC	2 cut(s)	105, 306
DpnII	GATC	2 cut(s)	103, 304
DraI	TTTAAA	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Ecl136II	GAGCTC	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	127
Eco53kI	GAGCTC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	192
Eco88I	CYCGRG	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	125
EcoRI	GAATTC	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	2 cut(s)	139, 156
FaiI	YATR	4 cut(s)	137, 154, 183, 200
FatI	CATG	2 cut(s)	135, 152
FauI	CCCGC	1 cut(s)	132
Fnu4HI	GCNGC	1 cut(s)	204
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	204
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	1 cut(s)	204
GsaI	CCCAGC	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	1 cut(s)	17
HgaI	GACGC	1 cut(s)	233
Hin1II	CATG	2 cut(s)	139, 156
HinfI	GANTC	1 cut(s)	33
HpaII	CCGG	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	2 cut(s)	32, 129
Hpy188III	TCNNGA	2 cut(s)	37, 91
Hpy8I	GTNNAC	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	167
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	1 cut(s)	115
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	2 cut(s)	139, 156
Kzo9I	GATC	2 cut(s)	103, 304
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	8 cut(s)	30, 76, 120, 152, 179, 234, 258, 283
Lsp1109I	GCAGC	1 cut(s)	215
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	1 cut(s)	67
MalI	GATC	2 cut(s)	105, 306
MboI	GATC	2 cut(s)	103, 304
MboII	GAAGA	3 cut(s)	130, 142, 350
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	3 cut(s)	77, 86, 254
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	1 cut(s)	253
MseI	TTAA	2 cut(s)	146, 312
MspI	CCGG	1 cut(s)	17
NdeII	GATC	2 cut(s)	103, 304
NlaIII	CATG	2 cut(s)	139, 156
NlaIV	GGNNCC	2 cut(s)	105, 249
PfeI	GAWTC	1 cut(s)	33
PkrI	GCNGC	1 cut(s)	205
Psp124BI	GAGCTC	1 cut(s)	127
PspFI	CCCAGC	1 cut(s)	193
PspN4I	GGNNCC	2 cut(s)	105, 249
PspPI	GGNCC	1 cut(s)	156
PsuI	RGATCY	1 cut(s)	103
SacI	GAGCTC	1 cut(s)	127
SaqAI	TTAA	2 cut(s)	146, 312
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	2 cut(s)	103, 304
Sau96I	GGNCC	1 cut(s)	156
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	4 cut(s)	70, 127, 178, 223
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	3 cut(s)	77, 86, 254
SsiI	CCGC	1 cut(s)	139
SspMI	CTAG	1 cut(s)	308
SstI	GAGCTC	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	99
TaiI	ACGT	1 cut(s)	70
TasI	AATT	3 cut(s)	77, 86, 254
TfiI	GAWTC	1 cut(s)	33
Tru1I	TTAA	2 cut(s)	146, 312
Tru9I	TTAA	2 cut(s)	146, 312
TseI	GCWGC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	347
XapI	RAATTY	2 cut(s)	77, 86
XcmI	CCANNNNNNNNNTGG	1 cut(s)	237
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.