Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018807.1

Orthogroup ID

OG0009852

Physical Location & Seq

Genomic Coordinates Reverse (-)

60356 .. 63291

Gene Structure 2936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018807.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atgctcagtactgttcaagctgttcatgatccgttgcccagtcctactgtttctgcatctcggaagaaacagaagactacacaatcaatacattcacaatcctttgttgggccatcaccaccatttcttccacagccatcaaccacatcccaccagccatcttcatccaatgtaaagagaggatctgttccagtcccagccccagtagccaagggcaagaaacataaatctggtcaaattttacctggtgcttcttccataaagccgcacccttcttcaggaaggggtcaagtttctaatagagtctcttctggtgcaattaggaatgagcctgtggaaggagcgacacttaatcctttcattgggaaaaaagttaggactaggtggccggaggacaacagcttttatgaagctgttataacggactataatgcagctaagggattacatgtactagtctacgatattaattctgctgatgaatcgtgggaatgggttaatctgtcagagatatctcctgaggatattcaatgggtagatgaagatcctggtatccctcaacgtgggggttatggtggatcaggtcatgggatgaatagatctgtaggccgtgatagtgttccaagttccggaagaggtagaggaatccgaaagggtcaatcaagaaaagattttctgccatcacagaatggcatcggaaagaaggcgccagatgatatacagttacttcacacagatactttaattaaggaggtagagagagtctttggtgcaaatcatccagaccctgttgaaattgataaagcaaagaaagttttgaaagatcatgagcaagcacttattgatgcaattgcaaagctcactgatatttctgacggtgaaagcgctgagggtggccaccagttcttacgtgggcaaccaatggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0043207 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ENT LBR_tudor

Protein Analysis

309

Amino Acids

33.3

Weight (kDa)

8.92

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44440
fragaria_vesca	FvH4_7g00190 FvH4_7g00190 FvH4_7g00190
malus_domestica	MD02G1318200.v1.1 MD07G1003100.v1.1
prunus_persica	Prupe.2G004600_v2.0.a1 Prupe.2G004600_v2.0.a1
pyrus_communis	pycom07g00320
rosa_chinensis	RchiOBHm_Chr1g0313441
rosa_laevigata	RLG00000030796
rosa_multiflora	Rmu_sc0000035.1_g000049 Rmu_sc0018807.1_g000015
rosa_roxburghii	Rroxscaffold_4G00332180
rosa_rugosa	RorugPtG0005100.1
rosa_samantha	Rh1AG003700 Rh1BG000600 Rh1CG001000 Rh1CG008000 Rh1DG003500
rosa_wichuraiana	Rw1G000240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	419
AccB1I	GGYRCC	1 cut(s)	706
AccI	GTMKAC	1 cut(s)	459
AccIII	TCCGGA	1 cut(s)	629
AciI	CCGC	1 cut(s)	266
AclWI	GGATC	4 cut(s)	23, 190, 539, 586
AcoI	YGGCCR	2 cut(s)	386, 895
AcsI	RAATTY	1 cut(s)	237
AcuI	CTGAAG	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	707
AfaI	GTAC	2 cut(s)	10, 453
AfeI	AGCGCT	1 cut(s)	886
AfiI	CCNNNNNNNGG	6 cut(s)	108, 278, 338, 362, 563, 629
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	4 cut(s)	17, 530, 794, 820
AhlI	ACTAGT	1 cut(s)	454
AjnI	CCWGG	2 cut(s)	244, 547
AluBI	AGCT	5 cut(s)	20, 402, 413, 437, 859
AluI	AGCT	5 cut(s)	20, 402, 413, 437, 859
Alw26I	GTCTC	1 cut(s)	310
AlwI	GGATC	4 cut(s)	23, 190, 539, 586
AlwNI	CAGNNNCTG	1 cut(s)	788
Aor13HI	TCCGGA	1 cut(s)	629
Aor51HI	AGCGCT	1 cut(s)	886
AoxI	GGCC	4 cut(s)	110, 386, 607, 895
ApeKI	GCWGC	1 cut(s)	434
ApoI	RAATTY	1 cut(s)	237
AseI	ATTAAT	1 cut(s)	468
AspLEI	GCGC	2 cut(s)	709, 887
AspS9I	GGNCC	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	108, 890
AxyI	CCTNAGG	1 cut(s)	519
BalI	TGGCCA	1 cut(s)	897
BanI	GGYRCC	1 cut(s)	706
BbsI	GAAGAC	1 cut(s)	80
BbvCI	CCTCAGC	1 cut(s)	888
BbvI	GCAGC	1 cut(s)	446
BccI	CCATC	4 cut(s)	121, 145, 166, 688
BceAI	ACGGC	1 cut(s)	594
BciT130I	CCWGG	2 cut(s)	246, 549
BciVI	GTATCC	1 cut(s)	563
BcoDI	GTCTC	1 cut(s)	310
BcuI	ACTAGT	1 cut(s)	454
BfaI	CTAG	2 cut(s)	381, 455
BfmI	CTRYAG	1 cut(s)	603
BfoI	RGCGCY	2 cut(s)	710, 888
BfuI	GTATCC	1 cut(s)	563
BglII	AGATCT	1 cut(s)	599
BisI	GCNGC	2 cut(s)	266, 435
BlsI	GCNGC	2 cut(s)	267, 436
BmcAI	AGTACT	1 cut(s)	10
Bme1390I	CCNGG	2 cut(s)	246, 549
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	708
BmrFI	CCNGG	2 cut(s)	246, 549
BmrI	ACTGGG	2 cut(s)	33, 197
BmsI	GCATC	3 cut(s)	65, 702, 835
BmuI	ACTGGG	2 cut(s)	33, 197
BpiI	GAAGAC	1 cut(s)	80
Bpu10I	CCTNAGC	2 cut(s)	438, 888
BsaAI	YACGTR	1 cut(s)	911
BsaBI	GATNNNNATC	1 cut(s)	543
BsaHI	GRCGYC	1 cut(s)	707
BsaJI	CCNNGG	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	629
Bsc4I	CCNNNNNNNGG	6 cut(s)	108, 278, 338, 362, 563, 629
Bse1I	ACTGG	4 cut(s)	39, 191, 203, 901
Bse21I	CCTNAGG	1 cut(s)	519
Bse8I	GATNNNNATC	1 cut(s)	543
BseAI	TCCGGA	1 cut(s)	629
BseBI	CCWGG	2 cut(s)	246, 549
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	4 cut(s)	146, 164, 597, 778
BseJI	GATNNNNATC	1 cut(s)	543
BseLI	CCNNNNNNNGG	6 cut(s)	108, 278, 338, 362, 563, 629
BseMII	CTCAG	3 cut(s)	19, 510, 879
BseNI	ACTGG	4 cut(s)	39, 191, 203, 901
BseXI	GCAGC	1 cut(s)	446
BseYI	CCCAGC	1 cut(s)	196
BshFI	GGCC	4 cut(s)	112, 388, 609, 897
BshNI	GGYRCC	1 cut(s)	706
BsiSI	CCGG	2 cut(s)	389, 630
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	6 cut(s)	108, 278, 338, 362, 563, 629
BsmAI	GTCTC	1 cut(s)	310
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	4 cut(s)	112, 388, 609, 897
Bsp13I	TCCGGA	1 cut(s)	629
Bsp143I	GATC	6 cut(s)	28, 182, 544, 578, 599, 823
BspACI	CCGC	1 cut(s)	266
BspANI	GGCC	4 cut(s)	112, 388, 609, 897
BspCNI	CTCAG	3 cut(s)	18, 511, 880
BspEI	TCCGGA	1 cut(s)	629
BspHI	TCATGA	2 cut(s)	25, 826
BspLI	GGNNCC	1 cut(s)	708
BspPI	GGATC	4 cut(s)	23, 190, 539, 586
BspT107I	GGYRCC	1 cut(s)	706
BsrI	ACTGG	4 cut(s)	39, 191, 203, 901
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	6 cut(s)	28, 182, 544, 578, 599, 823
BssNI	GRCGYC	1 cut(s)	707
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	2 cut(s)	246, 549
Bst4CI	ACNGT	4 cut(s)	13, 49, 723, 878
Bst6I	CTCTTC	2 cut(s)	313, 628
BstACI	GRCGYC	1 cut(s)	707
BstBAI	YACGTR	1 cut(s)	911
BstC8I	GCNNGC	1 cut(s)	834
BstDEI	CTNAG	4 cut(s)	5, 438, 519, 888
BstENI	CCTNNNNNAGG	2 cut(s)	276, 336
BstF5I	GGATG	4 cut(s)	146, 164, 597, 778
BstH2I	RGCGCY	2 cut(s)	710, 888
BstHHI	GCGC	2 cut(s)	709, 887
BstKTI	GATC	6 cut(s)	31, 185, 547, 581, 602, 826
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	6 cut(s)	28, 182, 544, 578, 599, 823
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNI	CCWGG	2 cut(s)	246, 549
BstNSI	RCATGY	1 cut(s)	452
BstSCI	CCNGG	2 cut(s)	244, 547
BstSFI	CTRYAG	1 cut(s)	603
BstV1I	GCAGC	1 cut(s)	446
BstV2I	GAAGAC	1 cut(s)	80
BstX2I	RGATCY	3 cut(s)	182, 544, 599
BstYI	RGATCY	3 cut(s)	182, 544, 599
Bsu36I	CCTNAGG	1 cut(s)	519
BsuI	GTATCC	1 cut(s)	563
BsuRI	GGCC	4 cut(s)	112, 388, 609, 897
BtsCI	GGATG	4 cut(s)	146, 164, 597, 778
BtsIMutI	CAGTG	1 cut(s)	861
Cac8I	GCNNGC	1 cut(s)	834
CaiI	CAGNNNCTG	1 cut(s)	788
CciI	TCATGA	2 cut(s)	25, 826
CfoI	GCGC	2 cut(s)	709, 887
Cfr13I	GGNCC	1 cut(s)	110
CsiI	ACCWGGT	1 cut(s)	244
Csp6I	GTAC	2 cut(s)	9, 452
CviAII	CATG	4 cut(s)	26, 449, 587, 827
CviQI	GTAC	2 cut(s)	9, 452
DdeI	CTNAG	4 cut(s)	5, 438, 519, 888
DinI	GGCGCC	1 cut(s)	708
DpnI	GATC	6 cut(s)	30, 184, 546, 580, 601, 825
DpnII	GATC	6 cut(s)	28, 182, 544, 578, 599, 823
EaeI	YGGCCR	2 cut(s)	386, 895
Eam1104I	CTCTTC	2 cut(s)	313, 628
EarI	CTCTTC	2 cut(s)	313, 628
Eco130I	CCWWGG	1 cut(s)	210
Eco32I	GATATC	1 cut(s)	513
Eco47III	AGCGCT	1 cut(s)	886
Eco57I	CTGAAG	1 cut(s)	261
Eco81I	CCTNAGG	1 cut(s)	519
EcoNI	CCTNNNNNAGG	2 cut(s)	276, 336
EcoRII	CCWGG	2 cut(s)	244, 547
EcoRV	GATATC	1 cut(s)	513
EcoT14I	CCWWGG	1 cut(s)	210
EgeI	GGCGCC	1 cut(s)	708
EheI	GGCGCC	1 cut(s)	708
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	4 cut(s)	29, 452, 590, 830
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	4 cut(s)	25, 448, 586, 826
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	2 cut(s)	266, 435
FokI	GGATG	4 cut(s)	133, 151, 604, 765
Fsp4HI	GCNGC	2 cut(s)	266, 435
FspBI	CTAG	2 cut(s)	381, 455
GlaI	GCGC	2 cut(s)	708, 886
GluI	GCNGC	2 cut(s)	266, 435
GsaI	CCCAGC	1 cut(s)	200
HaeII	RGCGCY	2 cut(s)	710, 888
HaeIII	GGCC	4 cut(s)	112, 388, 609, 897
HapII	CCGG	2 cut(s)	389, 630
HhaI	GCGC	2 cut(s)	709, 887
Hin1I	GRCGYC	1 cut(s)	707
Hin1II	CATG	4 cut(s)	29, 452, 590, 830
Hin6I	GCGC	2 cut(s)	707, 885
HinP1I	GCGC	2 cut(s)	707, 885
HinfI	GANTC	4 cut(s)	303, 482, 645, 762
HpaII	CCGG	2 cut(s)	389, 630
HphI	GGTGA	2 cut(s)	108, 890
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	5 cut(s)	63, 508, 650, 698, 874
Hpy188III	TCNNGA	7 cut(s)	26, 279, 518, 630, 663, 782, 827
Hpy8I	GTNNAC	1 cut(s)	460
HpyAV	CCTTC	4 cut(s)	276, 282, 332, 697
HpyCH4III	ACNGT	4 cut(s)	13, 49, 723, 878
HpyCH4IV	ACGT	2 cut(s)	562, 910
HpyCH4V	TGCA	6 cut(s)	56, 317, 434, 773, 848, 854
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	4 cut(s)	5, 438, 519, 888
HpySE526I	ACGT	2 cut(s)	562, 910
Hsp92I	GRCGYC	1 cut(s)	707
Hsp92II	CATG	4 cut(s)	29, 452, 590, 830
HspAI	GCGC	2 cut(s)	707, 885
KasI	GGCGCC	1 cut(s)	706
Kpn2I	TCCGGA	1 cut(s)	629
Kzo9I	GATC	6 cut(s)	28, 182, 544, 578, 599, 823
LmnI	GCTCC	1 cut(s)	341
Lsp1109I	GCAGC	1 cut(s)	446
LweI	GCATC	3 cut(s)	65, 702, 835
MabI	ACCWGGT	1 cut(s)	244
MaeI	CTAG	2 cut(s)	381, 455
MaeII	ACGT	2 cut(s)	562, 910
MaeIII	GTNAC	1 cut(s)	723
MalI	GATC	6 cut(s)	30, 184, 546, 580, 601, 825
MboI	GATC	6 cut(s)	28, 182, 544, 578, 599, 823
MboII	GAAGA	9 cut(s)	76, 85, 119, 153, 246, 267, 300, 554, 645
MfeI	CAATTG	1 cut(s)	849
MflI	RGATCY	3 cut(s)	182, 544, 599
MlsI	TGGCCA	1 cut(s)	897
MluCI	AATT	6 cut(s)	237, 318, 469, 744, 795, 849
MluNI	TGGCCA	1 cut(s)	897
Mly113I	GGCGCC	1 cut(s)	707
MlyI	GAGTC	2 cut(s)	312, 771
MnlI	CCTC	8 cut(s)	173, 385, 514, 567, 629, 635, 745, 883
Mox20I	TGGCCA	1 cut(s)	897
MroI	TCCGGA	1 cut(s)	629
MscI	TGGCCA	1 cut(s)	897
MseI	TTAA	5 cut(s)	351, 468, 498, 743, 747
Msp20I	TGGCCA	1 cut(s)	897
MspI	CCGG	2 cut(s)	389, 630
MspR9I	CCNGG	2 cut(s)	246, 549
MunI	CAATTG	1 cut(s)	849
MvaI	CCWGG	2 cut(s)	246, 549
MwoI	GCNNNNNNNGC	1 cut(s)	206
NarI	GGCGCC	1 cut(s)	707
NdeII	GATC	6 cut(s)	28, 182, 544, 578, 599, 823
NlaIII	CATG	4 cut(s)	29, 452, 590, 830
NlaIV	GGNNCC	1 cut(s)	708
NspI	RCATGY	1 cut(s)	452
PacI	TTAATTAA	1 cut(s)	747
PagI	TCATGA	2 cut(s)	25, 826
PciI	ACATGT	1 cut(s)	448
PfeI	GAWTC	2 cut(s)	482, 645
PkrI	GCNGC	2 cut(s)	267, 436
PleI	GAGTC	2 cut(s)	311, 770
PluTI	GGCGCC	1 cut(s)	710
PpsI	GAGTC	2 cut(s)	311, 770
Ppu21I	YACGTR	1 cut(s)	911
PscI	ACATGT	1 cut(s)	448
PshBI	ATTAAT	1 cut(s)	468
PsiI	TTATAA	1 cut(s)	419
Psp6I	CCWGG	2 cut(s)	244, 547
PspFI	CCCAGC	1 cut(s)	196
PspGI	CCWGG	2 cut(s)	244, 547
PspN4I	GGNNCC	1 cut(s)	708
PspPI	GGNCC	1 cut(s)	110
PstNI	CAGNNNCTG	1 cut(s)	788
PsuI	RGATCY	3 cut(s)	182, 544, 599
RsaI	GTAC	2 cut(s)	10, 453
RsaNI	GTAC	2 cut(s)	9, 452
SaqAI	TTAA	5 cut(s)	351, 468, 498, 743, 747
SatI	GCNGC	2 cut(s)	266, 435
Sau3AI	GATC	6 cut(s)	28, 182, 544, 578, 599, 823
Sau96I	GGNCC	1 cut(s)	110
ScaI	AGTACT	1 cut(s)	10
SchI	GAGTC	2 cut(s)	312, 771
ScrFI	CCNGG	2 cut(s)	246, 549
SexAI	ACCWGGT	1 cut(s)	244
SfaNI	GCATC	3 cut(s)	65, 702, 835
SfcI	CTRYAG	1 cut(s)	603
SfoI	GGCGCC	1 cut(s)	708
SpeI	ACTAGT	1 cut(s)	454
Sse9I	AATT	6 cut(s)	237, 318, 469, 744, 795, 849
SsiI	CCGC	1 cut(s)	266
SspDI	GGCGCC	1 cut(s)	706
SspMI	CTAG	2 cut(s)	381, 455
StyD4I	CCNGG	2 cut(s)	244, 547
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	4 cut(s)	13, 49, 723, 878
TaiI	ACGT	2 cut(s)	565, 913
TasI	AATT	6 cut(s)	237, 318, 469, 744, 795, 849
TatI	WGTACW	2 cut(s)	8, 451
TauI	GCSGC	1 cut(s)	268
TfiI	GAWTC	2 cut(s)	482, 645
Tru1I	TTAA	5 cut(s)	351, 468, 498, 743, 747
Tru9I	TTAA	5 cut(s)	351, 468, 498, 743, 747
TscAI	CASTG	1 cut(s)	868
TseI	GCWGC	1 cut(s)	434
TspDTI	ATGAA	7 cut(s)	14, 153, 349, 423, 495, 555, 608
TspGWI	ACGGA	2 cut(s)	21, 437
TspRI	CASTG	1 cut(s)	868
VspI	ATTAAT	1 cut(s)	468
XagI	CCTNNNNNAGG	2 cut(s)	276, 336
XapI	RAATTY	1 cut(s)	237
XceI	RCATGY	1 cut(s)	452
XcmI	CCANNNNNNNNNTGG	1 cut(s)	908
XmiI	GTMKAC	1 cut(s)	459
XspI	CTAG	2 cut(s)	381, 455
ZrmI	AGTACT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.