Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020572.1

Orthogroup ID

OG0005330

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 417

Gene Structure 416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020572.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atgaagcgccctcctcctcctcttcaatacgtcgtcgttttaggcacacgcgccaccgcaatgtcttctcgccctccctttcgaggcggacggaaccaatggaagagaggctactcgaatcgtccgttttccggcggcgacagagctcagtacgtcaccggagactcgcacatccggtcggtccaggacgccaatctcggattccggcaaggcgacgccggaagcttcaccaaccaacccggtcatcaccgtccgtttagtcagaacaatcagttccgccgacctccgccggcggatcacagccaacactaccggcctcaccagcaattccggccacct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

113

Amino Acids

12.89

Weight (kDa)

11.71

Isoelectric Point (pI)

75.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11350 AT5G11350 AT5G11350 AT5G11350 AT5G11350
fragaria_vesca	FvH4_2g29760 FvH4_2g29760 FvH4_2g29760 FvH4_2g29760 FvH4_2g29760 FvH4_2g29760 FvH4_2g29760 FvH4_2g29760
malus_domestica	MD15G1118800.v1.1
prunus_persica	Prupe.1G472000_v2.0.a1 Prupe.1G472000_v2.0.a1
pyrus_communis	pycom15g10680
rosa_chinensis	RchiOBHm_Chr6g0298781
rosa_laevigata	RLG00000011486
rosa_multiflora	Rmu_sc0020571.1_g000001 Rmu_sc0020572.1_g000001 Rmu_ssc0000397.1_g000015
rosa_roxburghii	Rroxscaffold_7G00169340
rosa_rugosa	Rorug06G0282900
rosa_samantha	Rh6AG394400 Rh6BG402200 Rh6CG408100 Rh6DG394800
rosa_wichuraiana	Rw6G034500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	51
AciI	CCGC	6 cut(s)	57, 87, 135, 277, 287, 293
AclWI	GGATC	1 cut(s)	303
AcoI	YGGCCR	1 cut(s)	332
AcyI	GRCGYC	2 cut(s)	189, 216
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	83, 131
AgsI	TTSAA	1 cut(s)	26
AjnI	CCWGG	1 cut(s)	183
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AluBI	AGCT	2 cut(s)	146, 225
AluI	AGCT	2 cut(s)	146, 225
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	1 cut(s)	303
AoxI	GGCC	2 cut(s)	314, 332
AspLEI	GCGC	2 cut(s)	9, 53
AspS9I	GGNCC	1 cut(s)	181
AsuC2I	CCSGG	1 cut(s)	240
AsuHPI	GGTGA	4 cut(s)	148, 220, 239, 311
AvaII	GGWCC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	148
BarI	GAAGNNNNNNTAC	2 cut(s)	95, 127
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	148
BciT130I	CCWGG	1 cut(s)	185
BcnI	CCSGG	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	156
BfoI	RGCGCY	1 cut(s)	10
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
Bme1390I	CCNGG	2 cut(s)	185, 240
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	95
BmrFI	CCNGG	2 cut(s)	185, 240
BpiI	GAAGAC	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	240
BsaHI	GRCGYC	2 cut(s)	189, 216
BsaWI	WCCGGW	2 cut(s)	158, 174
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 131
Bse118I	RCCGGY	2 cut(s)	289, 312
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	185
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	83, 131
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	161
BseRI	GAGGAG	2 cut(s)	6, 9
Bsh1236I	CGCG	1 cut(s)	51
Bsh1285I	CGRYCG	1 cut(s)	179
BshFI	GGCC	2 cut(s)	316, 334
BsiEI	CGRYCG	1 cut(s)	179
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	9 cut(s)	132, 159, 175, 205, 219, 240, 290, 313, 331
BslI	CCNNNNNNNGG	2 cut(s)	83, 131
BsmAI	GTCTC	1 cut(s)	156
BsnI	GGCC	2 cut(s)	316, 334
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	295
BspACI	CCGC	6 cut(s)	57, 87, 135, 277, 287, 293
BspANI	GGCC	2 cut(s)	316, 334
BspCNI	CTCAG	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	95
BspPI	GGATC	1 cut(s)	303
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	2 cut(s)	289, 312
BssAI	RCCGGY	2 cut(s)	289, 312
BssMI	GATC	1 cut(s)	295
BssNI	GRCGYC	2 cut(s)	189, 216
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	1 cut(s)	251
Bst6I	CTCTTC	2 cut(s)	27, 98
BstACI	GRCGYC	2 cut(s)	189, 216
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	171
BstFNI	CGCG	1 cut(s)	51
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	2 cut(s)	9, 53
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	295
BstMCI	CGRYCG	1 cut(s)	179
BstMWI	GCNNNNNNNGC	2 cut(s)	322, 331
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	2 cut(s)	183, 238
BstUI	CGCG	1 cut(s)	51
BstV2I	GAAGAC	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	316, 334
BtsCI	GGATG	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	291
CfoI	GCGC	2 cut(s)	9, 53
Cfr10I	RCCGGY	2 cut(s)	289, 312
Cfr13I	GGNCC	1 cut(s)	181
CseI	GACGC	2 cut(s)	197, 224
Csp6I	GTAC	1 cut(s)	151
CviJI	RGCY	6 cut(s)	111, 146, 225, 303, 316, 334
CviKI_1	RGCY	6 cut(s)	111, 146, 225, 303, 316, 334
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	332
Eam1104I	CTCTTC	2 cut(s)	27, 98
EarI	CTCTTC	2 cut(s)	27, 98
EciI	GGCGGA	4 cut(s)	102, 266, 276, 308
Ecl136II	GAGCTC	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	148
Fnu4HI	GCNGC	1 cut(s)	136
FokI	GGATG	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	1 cut(s)	136
GlaI	GCGC	2 cut(s)	8, 52
GluI	GCNGC	1 cut(s)	136
HaeII	RGCGCY	1 cut(s)	10
HaeIII	GGCC	2 cut(s)	316, 334
HapII	CCGG	9 cut(s)	132, 159, 175, 205, 219, 240, 290, 313, 331
HgaI	GACGC	2 cut(s)	197, 224
HhaI	GCGC	2 cut(s)	9, 53
Hin1I	GRCGYC	2 cut(s)	189, 216
Hin6I	GCGC	2 cut(s)	7, 51
HinP1I	GCGC	2 cut(s)	7, 51
HindIII	AAGCTT	1 cut(s)	223
HinfI	GANTC	3 cut(s)	118, 164, 201
HpaII	CCGG	9 cut(s)	132, 159, 175, 205, 219, 240, 290, 313, 331
HphI	GGTGA	4 cut(s)	148, 220, 239, 311
Hpy188I	TCNGA	2 cut(s)	200, 264
Hpy99I	CGWCG	3 cut(s)	35, 38, 218
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	2 cut(s)	30, 153
HpyF10VI	GCNNNNNNNGC	2 cut(s)	322, 331
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	2 cut(s)	30, 153
Hsp92I	GRCGYC	2 cut(s)	189, 216
HspAI	GCGC	2 cut(s)	7, 51
KroI	GCCGGC	1 cut(s)	289
KroNI	GCCGGC	1 cut(s)	291
Kzo9I	GATC	1 cut(s)	295
MaeII	ACGT	2 cut(s)	30, 153
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	3 cut(s)	14, 57, 115
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	1 cut(s)	326
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	9 cut(s)	21, 24, 27, 30, 77, 84, 101, 294, 327
MreI	CGCCGGCG	1 cut(s)	289
MroNI	GCCGGC	1 cut(s)	289
MslI	CAYNNNNRTG	1 cut(s)	59
MspI	CCGG	9 cut(s)	132, 159, 175, 205, 219, 240, 290, 313, 331
MspR9I	CCNGG	2 cut(s)	185, 240
MvaI	CCWGG	1 cut(s)	185
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	2 cut(s)	322, 331
NaeI	GCCGGC	1 cut(s)	291
NciI	CCSGG	1 cut(s)	240
NdeII	GATC	1 cut(s)	295
NgoMIV	GCCGGC	1 cut(s)	289
NlaIV	GGNNCC	1 cut(s)	95
NmuCI	GTSAC	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	122
PdiI	GCCGGC	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	118, 201
PfoI	TCCNGGA	1 cut(s)	183
PkrI	GCNGC	1 cut(s)	137
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
Psp124BI	GAGCTC	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	95
PspPI	GGNCC	1 cut(s)	181
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	59
SacI	GAGCTC	1 cut(s)	148
SatI	GCNGC	1 cut(s)	136
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	2 cut(s)	185, 240
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	5 cut(s)	33, 148, 156, 227, 286
SgrAI	CRCCGGYG	1 cut(s)	289
SinI	GGWCC	1 cut(s)	181
SmiMI	CAYNNNNRTG	1 cut(s)	59
Sse9I	AATT	1 cut(s)	326
SsiI	CCGC	6 cut(s)	57, 87, 135, 277, 287, 293
SstI	GAGCTC	1 cut(s)	148
StyD4I	CCNGG	2 cut(s)	183, 238
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	2 cut(s)	33, 156
TaqI	TCGA	2 cut(s)	82, 116
TaqII	GACCGA	1 cut(s)	169
TasI	AATT	1 cut(s)	326
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	2 cut(s)	118, 201
TseFI	GTSAC	1 cut(s)	154
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	3 cut(s)	106, 114, 243
VpaK11BI	GGWCC	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.