Rmu_sc0022857.1_g000001

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022857.1
OG0018419
Physical Location & Seq
Forward (+)
3 .. 1046
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022857.1_g000001.1.cds

Sequence Viewer

Length: 912 bp
atgcttccctcccttgcctttgatgataccgttggcagctccattgagagaattgtcaatcatgttctcttttctcacattggccctgtagacgctttcaagctttctactgcaaaaggtctgtctctagacactagagatattgatctatggatttctcatctatcgagttactctatcaaggagtttatactgaaattatggaataggagtttcaaatacgatgtcttttcccgtttgttttcttttcaagatttgactcacttggagttatgcaattgttccctaaaacctccgtccacattcaaaggcttccgggtgttgaagggccttcatattcgaagagttacagtggctcaagatgcgttggaaaaactgatcgagagtggtcctcttcttgagagaatgactctatgtgacataacgcgtctcactcagctcaacatttatgcacagaatctccaattccttaaagtaggaggtgtttttcaggatttcagacttaagaataccacaaatctcgttgatgtttcaattgatggaaaatgggactccagtgaattcttcaagttttttgttcagctgcctattattgaaaggctcacaattaagtttaaagggagcaacaggatgaggttaaatcagccctactggaattgcagattcacccaacttcaagttttgaaagtaactggctattttggcctacacacagaggaagtagagttcatcagatctgtgctttcaagttcacctgtgctcaagaggattgctcttcaacctgtttctggtaccaatgtctgttgggaactgcctataatgttgaacgattttgggaatgtagagaaaaatttcttggccccgttaactgattactatatgcaatctaatgagtattatgatgaggattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

303

Amino Acids

35.04

Weight (kDa)

7.64

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018419)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g17800
rosa_chinensis RchiOBHm_Chr1g0365081
rosa_laevigata RLG00000027446
rosa_multiflora Rmu_sc0022857.1_g000001 Rmu_sc0034521.1_g000001
rosa_roxburghii Rroxscaffold_4G00291490 Rroxscaffold_4G00291940
rosa_rugosa Rorug01G0319400
rosa_samantha Rh1AG328400 Rh1DG321400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 791
AccB1I GGYRCC 1 cut(s) 791
AccI GTMKAC 1 cut(s) 90
AccII CGCG 1 cut(s) 427
AcsI RAATTY 2 cut(s) 560, 850
AfaI GTAC 1 cut(s) 793
AfiI CCNNNNNNNGG 1 cut(s) 788
AflII CTTAAG 1 cut(s) 503
AflIII ACRYGT 1 cut(s) 425
AjuI GAANNNNNNNTTGG 2 cut(s) 839, 871
AloI GAACNNNNNNTCC 2 cut(s) 710, 742
AluBI AGCT 4 cut(s) 39, 103, 439, 583
AluI AGCT 4 cut(s) 39, 103, 439, 583
Alw21I GWGCWC 1 cut(s) 762
Alw26I GTCTC 2 cut(s) 129, 434
AoxI GGCC 4 cut(s) 82, 328, 703, 858
ApeKI GCWGC 2 cut(s) 36, 583
ApoI RAATTY 2 cut(s) 560, 850
ArsI GACNNNNNNTTYG 4 cut(s) 107, 139, 210, 242
Asp700I GAANNNNTTC 1 cut(s) 851
Asp718I GGTACC 1 cut(s) 791
AspS9I GGNCC 4 cut(s) 83, 328, 389, 859
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 2 cut(s) 658, 744
AsuII TTCGAA 1 cut(s) 340
AvaII GGWCC 1 cut(s) 389
BaeI ACNNNNGTAYC 2 cut(s) 783, 816
BanI GGYRCC 1 cut(s) 791
Bbv12I GWGCWC 1 cut(s) 762
BbvI GCAGC 2 cut(s) 48, 570
BccI CCATC 1 cut(s) 533
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 2 cut(s) 129, 434
BfaI CTAG 2 cut(s) 128, 135
BfmI CTRYAG 1 cut(s) 87
BfrI CTTAAG 1 cut(s) 503
BglII AGATCT 1 cut(s) 734
BisI GCNGC 2 cut(s) 37, 584
BlsI GCNGC 2 cut(s) 38, 585
Bme1390I CCNGG 1 cut(s) 317
Bme18I GGWCC 1 cut(s) 389
BmgT120I GGNCC 4 cut(s) 83, 328, 389, 859
BmiI GGNNCC 2 cut(s) 793, 861
BmrFI CCNGG 1 cut(s) 317
BmsI GCATC 1 cut(s) 352
BplI GAGNNNNNCTC 6 cut(s) 376, 408, 394, 426, 757, 789
BpmI CTGGAG 1 cut(s) 538
Bpu14I TTCGAA 1 cut(s) 340
BpuEI CTTGAG 3 cut(s) 342, 419, 746
BpuMI CCSGG 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 444, 474
Bsc4I CCNNNNNNNGG 1 cut(s) 788
Bse1I ACTGG 3 cut(s) 555, 656, 697
Bse8I GATNNNNATC 1 cut(s) 144
BseGI GGATG 1 cut(s) 636
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 788
BseMII CTCAG 1 cut(s) 449
BseNI ACTGG 3 cut(s) 555, 656, 697
BseXI GCAGC 2 cut(s) 48, 570
Bsh1236I CGCG 1 cut(s) 427
BshFI GGCC 4 cut(s) 84, 330, 705, 860
BshNI GGYRCC 1 cut(s) 791
BsiHKAI GWGCWC 1 cut(s) 762
BsiSI CCGG 1 cut(s) 316
BslFI GGGAC 1 cut(s) 563
BslI CCNNNNNNNGG 1 cut(s) 788
BsmAI GTCTC 2 cut(s) 129, 434
BsmBI CGTCTC 1 cut(s) 434
BsmFI GGGAC 1 cut(s) 563
BsnI GGCC 4 cut(s) 84, 330, 705, 860
Bsp119I TTCGAA 1 cut(s) 340
Bsp1286I GDGCHC 1 cut(s) 762
Bsp143I GATC 3 cut(s) 145, 378, 734
BspANI GGCC 4 cut(s) 84, 330, 705, 860
BspCNI CTCAG 1 cut(s) 448
BspFNI CGCG 1 cut(s) 427
BspLI GGNNCC 2 cut(s) 793, 861
BspQI GCTCTTC 1 cut(s) 780
BspT104I TTCGAA 1 cut(s) 340
BspT107I GGYRCC 1 cut(s) 791
BspTI CTTAAG 1 cut(s) 503
BsrI ACTGG 3 cut(s) 555, 656, 697
BssMI GATC 3 cut(s) 145, 378, 734
Bst4CI ACNGT 2 cut(s) 31, 352
Bst6I CTCTTC 3 cut(s) 337, 399, 780
BstAFI CTTAAG 1 cut(s) 503
BstBI TTCGAA 1 cut(s) 340
BstDEI CTNAG 1 cut(s) 435
BstF5I GGATG 1 cut(s) 636
BstFNI CGCG 1 cut(s) 427
BstKTI GATC 3 cut(s) 148, 381, 737
BstMAI GTCTC 2 cut(s) 129, 434
BstMBI GATC 3 cut(s) 145, 378, 734
BstMWI GCNNNNNNNGC 2 cut(s) 362, 702
BstSCI CCNGG 1 cut(s) 315
BstSFI CTRYAG 1 cut(s) 87
BstUI CGCG 1 cut(s) 427
BstV1I GCAGC 2 cut(s) 48, 570
BstX2I RGATCY 1 cut(s) 734
BstYI RGATCY 1 cut(s) 734
BsuRI GGCC 4 cut(s) 84, 330, 705, 860
BtsCI GGATG 1 cut(s) 636
BtsIMutI CAGTG 2 cut(s) 357, 562
Cfr13I GGNCC 4 cut(s) 83, 328, 389, 859
CseI GACGC 2 cut(s) 101, 416
Csp6I GTAC 1 cut(s) 792
CviAII CATG 1 cut(s) 62
CviQI GTAC 1 cut(s) 792
DdeI CTNAG 1 cut(s) 435
DpnI GATC 3 cut(s) 147, 380, 736
DpnII GATC 3 cut(s) 145, 378, 734
DraI TTTAAA 1 cut(s) 616
Eam1104I CTCTTC 3 cut(s) 337, 399, 780
EarI CTCTTC 3 cut(s) 337, 399, 780
Eco47I GGWCC 1 cut(s) 389
EcoO109I RGGNCCY 1 cut(s) 328
EcoRI GAATTC 1 cut(s) 560
Esp3I CGTCTC 1 cut(s) 434
FaeI CATG 1 cut(s) 65
FaqI GGGAC 1 cut(s) 563
FatI CATG 1 cut(s) 61
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 37, 584
FokI GGATG 1 cut(s) 643
Fsp4HI GCNGC 2 cut(s) 37, 584
FspBI CTAG 2 cut(s) 128, 135
GluI GCNGC 2 cut(s) 37, 584
GsuI CTGGAG 1 cut(s) 538
HaeIII GGCC 4 cut(s) 84, 330, 705, 860
HapII CCGG 1 cut(s) 316
HgaI GACGC 2 cut(s) 101, 416
Hin1II CATG 1 cut(s) 65
HincII GTYRAC 1 cut(s) 867
HindII GTYRAC 1 cut(s) 867
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 5 cut(s) 259, 409, 457, 551, 663
HpaI GTTAAC 1 cut(s) 867
HpaII CCGG 1 cut(s) 316
HphI GGTGA 2 cut(s) 658, 744
Hpy166II GTNNAC 4 cut(s) 91, 300, 752, 867
Hpy188I TCNGA 2 cut(s) 500, 734
Hpy188III TCNNGA 7 cut(s) 128, 251, 359, 382, 398, 491, 763
Hpy8I GTNNAC 4 cut(s) 91, 300, 752, 867
HpyAV CCTTC 2 cut(s) 319, 341
HpyCH4III ACNGT 2 cut(s) 31, 352
HpyCH4V TGCA 5 cut(s) 113, 276, 452, 660, 883
HpyF10VI GCNNNNNNNGC 2 cut(s) 362, 702
HpyF3I CTNAG 1 cut(s) 435
Hsp92II CATG 1 cut(s) 65
KpnI GGTACC 1 cut(s) 795
KspAI GTTAAC 1 cut(s) 867
Kzo9I GATC 3 cut(s) 145, 378, 734
LguI GCTCTTC 1 cut(s) 780
LmnI GCTCC 2 cut(s) 44, 621
Lsp1109I GCAGC 2 cut(s) 48, 570
LweI GCATC 1 cut(s) 352
MaeI CTAG 2 cut(s) 128, 135
MaeIII GTNAC 4 cut(s) 170, 346, 416, 688
MalI GATC 3 cut(s) 147, 380, 736
MboI GATC 3 cut(s) 145, 378, 734
MboII GAAGA 4 cut(s) 354, 386, 556, 767
MfeI CAATTG 2 cut(s) 277, 534
MflI RGATCY 1 cut(s) 734
MhlI GDGCHC 1 cut(s) 762
MluCI AATT 9 cut(s) 51, 197, 277, 464, 534, 560, 606, 655, 850
MluI ACGCGT 1 cut(s) 425
MlyI GAGTC 3 cut(s) 253, 403, 545
MmeI TCCRAC 1 cut(s) 348
MnlI CCTC 8 cut(s) 19, 303, 402, 473, 627, 709, 759, 898
MroXI GAANNNNTTC 1 cut(s) 851
MseI TTAA 6 cut(s) 471, 504, 609, 615, 638, 866
MspA1I CMGCKG 1 cut(s) 583
MspCI CTTAAG 1 cut(s) 503
MspI CCGG 1 cut(s) 316
MspR9I CCNGG 1 cut(s) 317
MunI CAATTG 2 cut(s) 277, 534
MvnI CGCG 1 cut(s) 427
MwoI GCNNNNNNNGC 2 cut(s) 362, 702
NciI CCSGG 1 cut(s) 317
NdeII GATC 3 cut(s) 145, 378, 734
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 2 cut(s) 793, 861
NmuCI GTSAC 1 cut(s) 416
NspV TTCGAA 1 cut(s) 340
PciSI GCTCTTC 1 cut(s) 780
PdmI GAANNNNTTC 1 cut(s) 851
PfeI GAWTC 2 cut(s) 457, 663
PkrI GCNGC 2 cut(s) 38, 585
PleI GAGTC 3 cut(s) 253, 403, 545
PpsI GAGTC 3 cut(s) 253, 403, 545
PspN4I GGNNCC 2 cut(s) 793, 861
PspPI GGNCC 4 cut(s) 83, 328, 389, 859
PsuI RGATCY 1 cut(s) 734
PvuII CAGCTG 1 cut(s) 583
RsaI GTAC 1 cut(s) 793
RsaNI GTAC 1 cut(s) 792
SapI GCTCTTC 1 cut(s) 780
SaqAI TTAA 6 cut(s) 471, 504, 609, 615, 638, 866
SatI GCNGC 2 cut(s) 37, 584
Sau3AI GATC 3 cut(s) 145, 378, 734
Sau96I GGNCC 4 cut(s) 83, 328, 389, 859
SchI GAGTC 3 cut(s) 253, 403, 545
ScrFI CCNGG 1 cut(s) 317
SduI GDGCHC 1 cut(s) 762
SfaNI GCATC 1 cut(s) 352
SfcI CTRYAG 1 cut(s) 87
SfuI TTCGAA 1 cut(s) 340
SinI GGWCC 1 cut(s) 389
SmlI CTYRAG 4 cut(s) 357, 398, 503, 761
SmoI CTYRAG 4 cut(s) 357, 398, 503, 761
Sse9I AATT 9 cut(s) 51, 197, 277, 464, 534, 560, 606, 655, 850
SspMI CTAG 2 cut(s) 128, 135
StyD4I CCNGG 1 cut(s) 315
TaaI ACNGT 2 cut(s) 31, 352
TaqI TCGA 3 cut(s) 167, 340, 381
TasI AATT 9 cut(s) 51, 197, 277, 464, 534, 560, 606, 655, 850
TfiI GAWTC 2 cut(s) 457, 663
Tru1I TTAA 6 cut(s) 471, 504, 609, 615, 638, 866
Tru9I TTAA 6 cut(s) 471, 504, 609, 615, 638, 866
TscAI CASTG 2 cut(s) 357, 562
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 2 cut(s) 36, 583
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 2 cut(s) 323, 718
TspGWI ACGGA 1 cut(s) 285
TspRI CASTG 2 cut(s) 357, 562
Vha464I CTTAAG 1 cut(s) 503
VpaK11BI GGWCC 1 cut(s) 389
XapI RAATTY 2 cut(s) 560, 850
XbaI TCTAGA 1 cut(s) 127
XmiI GTMKAC 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 851
XspI CTAG 2 cut(s) 128, 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.