Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034521.1

Orthogroup ID

OG0018419

Physical Location & Seq

Genomic Coordinates Forward (+)

1431 .. 2249

Gene Structure 819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034521.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

atgggaagaagacgatcgaaatcctcttcgaaaaggaagaaaaagaaagagaagacgtttccgttggacaaaataagcaacttaccatgtgatgttatacagcatattttgtcatatttgcacttcaaggaggcagtgaaaacaagtgtgttatcgaaagcatggagacacaaatgggctatgcttccctcccttgcctttgatgataccgttggcagctccattgagagaattgtcaatcatgttctcttttctcacattggccctgtagacgctttcaagctttctactgcaaaaggtctgtctctagacactagagatattgatctatggatttctcatctatcgagttactctatcaaggagtttatactgaaattatggaataggagtttcaaatacgatgtcttttcccgtttgttttcttttcaagatttgactcacttggagttatgcaattgttccctaaaacctccgtccacattcaaaggcttccgggtgttgaagggccttcatattcgaagagttacagtggctcaagatgcgttggaaaaactgatcgagagtggtcctcttcttgagagaatgactctatgtgacataacgcgtctcactcagctcaacatttatgcacagaatctccaattccttaaagtaggaggtgtttttcaggatttcagacttaagaataccacaaatctcgttgatgtttcaattgatggaaaatgggactccagtgaattcttcaagttttttgttcagctgcctattattgaaaggctcacaattaaggtacttctaatttcttttcaaatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

272

Amino Acids

31.47

Weight (kDa)

9.79

Isoelectric Point (pI)

42.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018419)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17800
rosa_chinensis	RchiOBHm_Chr1g0365081
rosa_laevigata	RLG00000027446
rosa_multiflora	Rmu_sc0022857.1_g000001 Rmu_sc0034521.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291490 Rroxscaffold_4G00291940
rosa_rugosa	Rorug01G0319400
rosa_samantha	Rh1AG328400 Rh1DG321400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	270
AccII	CGCG	1 cut(s)	607
AcsI	RAATTY	1 cut(s)	740
AfaI	GTAC	1 cut(s)	795
AflII	CTTAAG	1 cut(s)	683
AflIII	ACRYGT	1 cut(s)	605
AluBI	AGCT	4 cut(s)	219, 283, 619, 763
AluI	AGCT	4 cut(s)	219, 283, 619, 763
Alw26I	GTCTC	3 cut(s)	160, 309, 614
AoxI	GGCC	2 cut(s)	262, 508
ApeKI	GCWGC	2 cut(s)	216, 763
ApoI	RAATTY	1 cut(s)	740
ArsI	GACNNNNNNTTYG	4 cut(s)	287, 319, 390, 422
AspS9I	GGNCC	3 cut(s)	263, 508, 569
AsuC2I	CCSGG	1 cut(s)	497
AsuII	TTCGAA	2 cut(s)	29, 520
AvaII	GGWCC	1 cut(s)	569
BbsI	GAAGAC	2 cut(s)	16, 59
BbvI	GCAGC	2 cut(s)	228, 750
BccI	CCATC	1 cut(s)	713
BcnI	CCSGG	1 cut(s)	497
BcoDI	GTCTC	3 cut(s)	160, 309, 614
BfaI	CTAG	2 cut(s)	308, 315
BfmI	CTRYAG	1 cut(s)	267
BfrI	CTTAAG	1 cut(s)	683
BisI	GCNGC	2 cut(s)	217, 764
BlsI	GCNGC	2 cut(s)	218, 765
Bme1390I	CCNGG	1 cut(s)	497
Bme18I	GGWCC	1 cut(s)	569
BmgT120I	GGNCC	3 cut(s)	263, 508, 569
BmrFI	CCNGG	1 cut(s)	497
BmsI	GCATC	1 cut(s)	532
BpiI	GAAGAC	2 cut(s)	16, 59
BplI	GAGNNNNNCTC	4 cut(s)	556, 588, 574, 606
BpmI	CTGGAG	1 cut(s)	718
Bpu14I	TTCGAA	2 cut(s)	29, 520
BpuEI	CTTGAG	2 cut(s)	522, 599
BpuMI	CCSGG	1 cut(s)	497
BsaBI	GATNNNNATC	2 cut(s)	19, 324
BsaXI	ACNNNNNCTCC	2 cut(s)	624, 654
Bse1I	ACTGG	1 cut(s)	735
Bse8I	GATNNNNATC	2 cut(s)	19, 324
BseJI	GATNNNNATC	2 cut(s)	19, 324
BseMII	CTCAG	1 cut(s)	629
BseNI	ACTGG	1 cut(s)	735
BseXI	GCAGC	2 cut(s)	228, 750
Bsh1236I	CGCG	1 cut(s)	607
Bsh1285I	CGRYCG	1 cut(s)	17
BshFI	GGCC	2 cut(s)	264, 510
BsiEI	CGRYCG	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	496
BslFI	GGGAC	1 cut(s)	743
BsmAI	GTCTC	3 cut(s)	160, 309, 614
BsmBI	CGTCTC	1 cut(s)	614
BsmFI	GGGAC	1 cut(s)	743
BsnI	GGCC	2 cut(s)	264, 510
Bsp119I	TTCGAA	2 cut(s)	29, 520
Bsp143I	GATC	3 cut(s)	14, 325, 558
BspANI	GGCC	2 cut(s)	264, 510
BspCNI	CTCAG	1 cut(s)	628
BspFNI	CGCG	1 cut(s)	607
BspT104I	TTCGAA	2 cut(s)	29, 520
BspTI	CTTAAG	1 cut(s)	683
BsrI	ACTGG	1 cut(s)	735
BssMI	GATC	3 cut(s)	14, 325, 558
Bst4CI	ACNGT	2 cut(s)	211, 532
Bst6I	CTCTTC	3 cut(s)	31, 517, 579
BstAFI	CTTAAG	1 cut(s)	683
BstBI	TTCGAA	2 cut(s)	29, 520
BstDEI	CTNAG	1 cut(s)	615
BstFNI	CGCG	1 cut(s)	607
BstKTI	GATC	3 cut(s)	17, 328, 561
BstMAI	GTCTC	3 cut(s)	160, 309, 614
BstMBI	GATC	3 cut(s)	14, 325, 558
BstMCI	CGRYCG	1 cut(s)	17
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstSCI	CCNGG	1 cut(s)	495
BstSFI	CTRYAG	1 cut(s)	267
BstUI	CGCG	1 cut(s)	607
BstV1I	GCAGC	2 cut(s)	228, 750
BstV2I	GAAGAC	2 cut(s)	16, 59
BsuRI	GGCC	2 cut(s)	264, 510
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	3 cut(s)	141, 537, 742
Cfr13I	GGNCC	3 cut(s)	263, 508, 569
CseI	GACGC	2 cut(s)	281, 596
Csp6I	GTAC	1 cut(s)	794
CviAII	CATG	3 cut(s)	87, 162, 242
CviQI	GTAC	1 cut(s)	794
DdeI	CTNAG	1 cut(s)	615
DpnI	GATC	3 cut(s)	16, 327, 560
DpnII	GATC	3 cut(s)	14, 325, 558
Eam1104I	CTCTTC	3 cut(s)	31, 517, 579
EarI	CTCTTC	3 cut(s)	31, 517, 579
Eco47I	GGWCC	1 cut(s)	569
EcoO109I	RGGNCCY	1 cut(s)	508
EcoRI	GAATTC	1 cut(s)	740
Esp3I	CGTCTC	1 cut(s)	614
FaeI	CATG	3 cut(s)	90, 165, 245
FaqI	GGGAC	1 cut(s)	743
FatI	CATG	3 cut(s)	86, 161, 241
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	2 cut(s)	217, 764
Fsp4HI	GCNGC	2 cut(s)	217, 764
FspBI	CTAG	2 cut(s)	308, 315
GluI	GCNGC	2 cut(s)	217, 764
GsuI	CTGGAG	1 cut(s)	718
HaeIII	GGCC	2 cut(s)	264, 510
HapII	CCGG	1 cut(s)	496
HgaI	GACGC	2 cut(s)	281, 596
Hin1II	CATG	3 cut(s)	90, 165, 245
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	4 cut(s)	439, 589, 637, 731
HpaII	CCGG	1 cut(s)	496
Hpy166II	GTNNAC	2 cut(s)	271, 480
Hpy188I	TCNGA	1 cut(s)	680
Hpy188III	TCNNGA	6 cut(s)	308, 431, 539, 562, 578, 671
Hpy8I	GTNNAC	2 cut(s)	271, 480
HpyAV	CCTTC	2 cut(s)	499, 521
HpyCH4III	ACNGT	2 cut(s)	211, 532
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	4 cut(s)	121, 293, 456, 632
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	1 cut(s)	615
HpySE526I	ACGT	1 cut(s)	56
Hsp92II	CATG	3 cut(s)	90, 165, 245
Kzo9I	GATC	3 cut(s)	14, 325, 558
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	4 cut(s)	279, 509, 656, 748
Lsp1109I	GCAGC	2 cut(s)	228, 750
LweI	GCATC	1 cut(s)	532
MaeI	CTAG	2 cut(s)	308, 315
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	3 cut(s)	350, 526, 596
MalI	GATC	3 cut(s)	16, 327, 560
MboI	GATC	3 cut(s)	14, 325, 558
MboII	GAAGA	8 cut(s)	18, 18, 21, 49, 64, 534, 566, 736
MfeI	CAATTG	2 cut(s)	457, 714
MluCI	AATT	8 cut(s)	231, 377, 457, 644, 714, 740, 786, 801
MluI	ACGCGT	1 cut(s)	605
MlyI	GAGTC	3 cut(s)	433, 583, 725
MmeI	TCCRAC	2 cut(s)	45, 528
MnlI	CCTC	6 cut(s)	34, 124, 199, 483, 582, 653
MseI	TTAA	3 cut(s)	651, 684, 789
MspA1I	CMGCKG	1 cut(s)	763
MspCI	CTTAAG	1 cut(s)	683
MspI	CCGG	1 cut(s)	496
MspR9I	CCNGG	1 cut(s)	497
MunI	CAATTG	2 cut(s)	457, 714
MvnI	CGCG	1 cut(s)	607
MwoI	GCNNNNNNNGC	1 cut(s)	542
NciI	CCSGG	1 cut(s)	497
NdeII	GATC	3 cut(s)	14, 325, 558
NlaIII	CATG	3 cut(s)	90, 165, 245
NmuCI	GTSAC	1 cut(s)	596
NspV	TTCGAA	2 cut(s)	29, 520
PfeI	GAWTC	1 cut(s)	637
PkrI	GCNGC	2 cut(s)	218, 765
Ple19I	CGATCG	1 cut(s)	17
PleI	GAGTC	3 cut(s)	433, 583, 725
PpsI	GAGTC	3 cut(s)	433, 583, 725
PspPI	GGNCC	3 cut(s)	263, 508, 569
PvuI	CGATCG	1 cut(s)	17
PvuII	CAGCTG	1 cut(s)	763
RsaI	GTAC	1 cut(s)	795
RsaNI	GTAC	1 cut(s)	794
SaqAI	TTAA	3 cut(s)	651, 684, 789
SatI	GCNGC	2 cut(s)	217, 764
Sau3AI	GATC	3 cut(s)	14, 325, 558
Sau96I	GGNCC	3 cut(s)	263, 508, 569
SchI	GAGTC	3 cut(s)	433, 583, 725
ScrFI	CCNGG	1 cut(s)	497
SetI	ASST	9 cut(s)	59, 221, 285, 301, 475, 621, 664, 765, 795
SfaNI	GCATC	1 cut(s)	532
SfcI	CTRYAG	1 cut(s)	267
SfuI	TTCGAA	2 cut(s)	29, 520
SinI	GGWCC	1 cut(s)	569
SmlI	CTYRAG	3 cut(s)	537, 578, 683
SmoI	CTYRAG	3 cut(s)	537, 578, 683
Sse9I	AATT	8 cut(s)	231, 377, 457, 644, 714, 740, 786, 801
SspMI	CTAG	2 cut(s)	308, 315
StyD4I	CCNGG	1 cut(s)	495
TaaI	ACNGT	2 cut(s)	211, 532
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	6 cut(s)	17, 29, 155, 347, 520, 561
TasI	AATT	8 cut(s)	231, 377, 457, 644, 714, 740, 786, 801
TfiI	GAWTC	1 cut(s)	637
Tru1I	TTAA	3 cut(s)	651, 684, 789
Tru9I	TTAA	3 cut(s)	651, 684, 789
TscAI	CASTG	3 cut(s)	141, 537, 742
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	2 cut(s)	216, 763
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	1 cut(s)	503
TspGWI	ACGGA	2 cut(s)	51, 465
TspRI	CASTG	3 cut(s)	141, 537, 742
Vha464I	CTTAAG	1 cut(s)	683
VpaK11BI	GGWCC	1 cut(s)	569
XapI	RAATTY	1 cut(s)	740
XbaI	TCTAGA	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	270
XspI	CTAG	2 cut(s)	308, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.