Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0018419

Physical Location & Seq

Genomic Coordinates Reverse (-)

12363745 .. 12364812

Gene Structure 1068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00291940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGTGACACAAATGGGCTATGCTTCCTCCCTTGCCTTTGATGATACCGATGGCAGCTCCATAACCTCCATTGAGAGAATTGTCAATCATGTTCTCTTTTCTCACACTGGCCCTGTAGACGCTTTCAAGCTTTCTACTGCAAGAGGTCTGTTAGACACTAGAGATATTGATCTATGGATTTCTCGTCTATGGAGTTACTCTATCAAGGAGTTTATACTGAAATTATGGAATAGGAGCTTCAAATACGATGTCTTTTCCCGTTTGTTTTCTTTTCAAGATTTGACTCTCTTGGAGTTATGCAATTGTTCCCTAAAACCTCCGTCCACATTCAAAGGCTTCCGGGTGTTGAAGGGCCTTCATATTCGAAAAGTTACAGTGGCTCAAGATGCGTTGGAAAAACTGATCGAGAGTGGTCCTCTTCTTGAGAGAATGACTCTATGTGACATAACGCGTCTCACTCAGCTCAACATTTATGCACAGAATCTCCAATTCCTTAAAGTCGGAGGTGTTTTTCAGGATTTCAGACTTAAGAATACCACAAATCTGGTTGATGTTTCAATTGATGGAAAATGGGACTCCAGTGAATTCTTCAAGTTTTTTGTTCAGCTGCCTATTATTGAAAGGCTCACAATTAAGTTTAAATGGAGCAGCAGGATGAGGTTAGATCAGCCCAACTGGAATTGCACATTCACCCAACTTCAAGTTTTGAAAGTAACTGGCTATTTTGGCATACACACAGAGGAAGTAGAGTTCATCAGATCTGTGCTTTCAAGTTCACCTGTGCTCAAGAGGATTGCTCTTCAACCTGTTTCTGGTACCAATGTCTGTTGGGAACTGCCTATAATGTTGAACGATTTTGGGAATGTAGAGAAAAATTTCTTGGCCCCGTTAACTGATTACTATATGCAATCTAATGAGTATTATGATGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

311

Amino Acids

35.98

Weight (kDa)

6.45

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	39 - 170	3.2e-11	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	57 - 183	1.1e-09	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018419)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17800
rosa_chinensis	RchiOBHm_Chr1g0365081
rosa_laevigata	RLG00000027446
rosa_multiflora	Rmu_sc0022857.1_g000001 Rmu_sc0034521.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291490 Rroxscaffold_4G00291940
rosa_rugosa	Rorug01G0319400
rosa_samantha	Rh1AG328400 Rh1DG321400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	815
AccB1I	GGYRCC	1 cut(s)	815
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	1 cut(s)	451
AcsI	RAATTY	2 cut(s)	584, 874
AfaI	GTAC	1 cut(s)	817
AfiI	CCNNNNNNNGG	1 cut(s)	812
AflII	CTTAAG	1 cut(s)	527
AflIII	ACRYGT	1 cut(s)	449
AjuI	GAANNNNNNNTTGG	2 cut(s)	863, 895
AloI	GAACNNNNNNTCC	2 cut(s)	734, 766
AluBI	AGCT	5 cut(s)	57, 130, 237, 463, 607
AluI	AGCT	5 cut(s)	57, 130, 237, 463, 607
Alw21I	GWGCWC	1 cut(s)	786
Alw26I	GTCTC	1 cut(s)	458
AoxI	GGCC	3 cut(s)	109, 352, 882
ApeKI	GCWGC	3 cut(s)	54, 607, 648
ApoI	RAATTY	2 cut(s)	584, 874
ArsI	GACNNNNNNTTYG	2 cut(s)	234, 266
Asp700I	GAANNNNTTC	1 cut(s)	875
Asp718I	GGTACC	1 cut(s)	815
AspS9I	GGNCC	4 cut(s)	110, 352, 413, 883
AsuC2I	CCSGG	1 cut(s)	341
AsuHPI	GGTGA	3 cut(s)	16, 682, 768
AsuII	TTCGAA	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	413
BaeI	ACNNNNGTAYC	2 cut(s)	807, 840
BanI	GGYRCC	1 cut(s)	815
Bbv12I	GWGCWC	1 cut(s)	786
BbvI	GCAGC	3 cut(s)	66, 594, 660
BccI	CCATC	2 cut(s)	44, 557
BcnI	CCSGG	1 cut(s)	341
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	1 cut(s)	114
BfrI	CTTAAG	1 cut(s)	527
BglII	AGATCT	1 cut(s)	758
BisI	GCNGC	3 cut(s)	55, 608, 649
BlsI	GCNGC	3 cut(s)	56, 609, 650
Bme1390I	CCNGG	1 cut(s)	341
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	4 cut(s)	110, 352, 413, 883
BmiI	GGNNCC	2 cut(s)	817, 885
BmrFI	CCNGG	1 cut(s)	341
BmsI	GCATC	1 cut(s)	376
BplI	GAGNNNNNCTC	6 cut(s)	400, 432, 418, 450, 781, 813
BpmI	CTGGAG	1 cut(s)	562
Bpu14I	TTCGAA	1 cut(s)	364
BpuEI	CTTGAG	3 cut(s)	366, 443, 770
BpuMI	CCSGG	1 cut(s)	341
BsaBI	GATNNNNATC	1 cut(s)	168
BsaXI	ACNNNNNCTCC	2 cut(s)	468, 498
Bsc4I	CCNNNNNNNGG	1 cut(s)	812
Bse1I	ACTGG	4 cut(s)	112, 579, 680, 721
Bse8I	GATNNNNATC	1 cut(s)	168
BseGI	GGATG	1 cut(s)	660
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	812
BseMII	CTCAG	1 cut(s)	473
BseNI	ACTGG	4 cut(s)	112, 579, 680, 721
BseXI	GCAGC	3 cut(s)	66, 594, 660
Bsh1236I	CGCG	1 cut(s)	451
BshFI	GGCC	3 cut(s)	111, 354, 884
BshNI	GGYRCC	1 cut(s)	815
BsiHKAI	GWGCWC	1 cut(s)	786
BsiSI	CCGG	1 cut(s)	340
BslFI	GGGAC	1 cut(s)	587
BslI	CCNNNNNNNGG	1 cut(s)	812
BsmAI	GTCTC	1 cut(s)	458
BsmBI	CGTCTC	1 cut(s)	458
BsmFI	GGGAC	1 cut(s)	587
BsnI	GGCC	3 cut(s)	111, 354, 884
Bsp119I	TTCGAA	1 cut(s)	364
Bsp1286I	GDGCHC	1 cut(s)	786
Bsp143I	GATC	4 cut(s)	169, 402, 664, 758
BspANI	GGCC	3 cut(s)	111, 354, 884
BspCNI	CTCAG	1 cut(s)	472
BspFNI	CGCG	1 cut(s)	451
BspLI	GGNNCC	2 cut(s)	817, 885
BspQI	GCTCTTC	1 cut(s)	804
BspT104I	TTCGAA	1 cut(s)	364
BspT107I	GGYRCC	1 cut(s)	815
BspTI	CTTAAG	1 cut(s)	527
BsrI	ACTGG	4 cut(s)	112, 579, 680, 721
BssMI	GATC	4 cut(s)	169, 402, 664, 758
Bst4CI	ACNGT	1 cut(s)	376
Bst6I	CTCTTC	2 cut(s)	423, 804
BstAFI	CTTAAG	1 cut(s)	527
BstBI	TTCGAA	1 cut(s)	364
BstDEI	CTNAG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	660
BstFNI	CGCG	1 cut(s)	451
BstKTI	GATC	4 cut(s)	172, 405, 667, 761
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	4 cut(s)	169, 402, 664, 758
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 726
BstSCI	CCNGG	1 cut(s)	339
BstSFI	CTRYAG	1 cut(s)	114
BstUI	CGCG	1 cut(s)	451
BstV1I	GCAGC	3 cut(s)	66, 594, 660
BstX2I	RGATCY	1 cut(s)	758
BstXI	CCANNNNNNTGG	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	758
BsuRI	GGCC	3 cut(s)	111, 354, 884
BtsCI	GGATG	1 cut(s)	660
BtsIMutI	CAGTG	3 cut(s)	105, 381, 586
Cfr13I	GGNCC	4 cut(s)	110, 352, 413, 883
CseI	GACGC	2 cut(s)	128, 440
Csp6I	GTAC	1 cut(s)	816
CviAII	CATG	1 cut(s)	89
CviQI	GTAC	1 cut(s)	816
DdeI	CTNAG	1 cut(s)	459
DpnI	GATC	4 cut(s)	171, 404, 666, 760
DpnII	GATC	4 cut(s)	169, 402, 664, 758
DraI	TTTAAA	1 cut(s)	640
Eam1104I	CTCTTC	2 cut(s)	423, 804
EarI	CTCTTC	2 cut(s)	423, 804
Eco47I	GGWCC	1 cut(s)	413
EcoO109I	RGGNCCY	1 cut(s)	352
EcoRI	GAATTC	1 cut(s)	584
Esp3I	CGTCTC	1 cut(s)	458
FaeI	CATG	1 cut(s)	92
FaqI	GGGAC	1 cut(s)	587
FatI	CATG	1 cut(s)	88
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	3 cut(s)	55, 608, 649
FokI	GGATG	1 cut(s)	667
Fsp4HI	GCNGC	3 cut(s)	55, 608, 649
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	3 cut(s)	55, 608, 649
GsuI	CTGGAG	1 cut(s)	562
HaeIII	GGCC	3 cut(s)	111, 354, 884
HapII	CCGG	1 cut(s)	340
HgaI	GACGC	2 cut(s)	128, 440
Hin1II	CATG	1 cut(s)	92
HincII	GTYRAC	1 cut(s)	891
HindII	GTYRAC	1 cut(s)	891
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	4 cut(s)	283, 433, 481, 575
HpaI	GTTAAC	1 cut(s)	891
HpaII	CCGG	1 cut(s)	340
HphI	GGTGA	3 cut(s)	16, 682, 768
Hpy166II	GTNNAC	4 cut(s)	118, 324, 776, 891
Hpy188I	TCNGA	3 cut(s)	503, 524, 758
Hpy188III	TCNNGA	6 cut(s)	275, 383, 406, 422, 515, 787
Hpy8I	GTNNAC	4 cut(s)	118, 324, 776, 891
HpyAV	CCTTC	2 cut(s)	343, 365
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4V	TGCA	5 cut(s)	140, 300, 476, 684, 907
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 726
HpyF3I	CTNAG	1 cut(s)	459
Hsp92II	CATG	1 cut(s)	92
KpnI	GGTACC	1 cut(s)	819
KspAI	GTTAAC	1 cut(s)	891
Kzo9I	GATC	4 cut(s)	169, 402, 664, 758
LguI	GCTCTTC	1 cut(s)	804
LmnI	GCTCC	3 cut(s)	62, 234, 645
Lsp1109I	GCAGC	3 cut(s)	66, 594, 660
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	5 cut(s)	4, 194, 370, 440, 712
MalI	GATC	4 cut(s)	171, 404, 666, 760
MboI	GATC	4 cut(s)	169, 402, 664, 758
MboII	GAAGA	3 cut(s)	410, 580, 791
MfeI	CAATTG	2 cut(s)	301, 558
MflI	RGATCY	1 cut(s)	758
MhlI	GDGCHC	1 cut(s)	786
MluCI	AATT	9 cut(s)	78, 221, 301, 488, 558, 584, 630, 679, 874
MluI	ACGCGT	1 cut(s)	449
MlyI	GAGTC	3 cut(s)	277, 427, 569
MmeI	TCCRAC	2 cut(s)	372, 481
MroXI	GAANNNNTTC	1 cut(s)	875
MseI	TTAA	5 cut(s)	495, 528, 633, 639, 890
MspA1I	CMGCKG	1 cut(s)	607
MspCI	CTTAAG	1 cut(s)	527
MspI	CCGG	1 cut(s)	340
MspR9I	CCNGG	1 cut(s)	341
MunI	CAATTG	2 cut(s)	301, 558
MvnI	CGCG	1 cut(s)	451
MwoI	GCNNNNNNNGC	2 cut(s)	386, 726
NciI	CCSGG	1 cut(s)	341
NdeII	GATC	4 cut(s)	169, 402, 664, 758
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	2 cut(s)	817, 885
NmuCI	GTSAC	2 cut(s)	4, 440
NspV	TTCGAA	1 cut(s)	364
PciSI	GCTCTTC	1 cut(s)	804
PdmI	GAANNNNTTC	1 cut(s)	875
PfeI	GAWTC	1 cut(s)	481
PkrI	GCNGC	3 cut(s)	56, 609, 650
PleI	GAGTC	3 cut(s)	277, 427, 569
PpsI	GAGTC	3 cut(s)	277, 427, 569
PspN4I	GGNNCC	2 cut(s)	817, 885
PspPI	GGNCC	4 cut(s)	110, 352, 413, 883
PsuI	RGATCY	1 cut(s)	758
PvuII	CAGCTG	1 cut(s)	607
RsaI	GTAC	1 cut(s)	817
RsaNI	GTAC	1 cut(s)	816
SapI	GCTCTTC	1 cut(s)	804
SaqAI	TTAA	5 cut(s)	495, 528, 633, 639, 890
SatI	GCNGC	3 cut(s)	55, 608, 649
Sau3AI	GATC	4 cut(s)	169, 402, 664, 758
Sau96I	GGNCC	4 cut(s)	110, 352, 413, 883
SchI	GAGTC	3 cut(s)	277, 427, 569
ScrFI	CCNGG	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	786
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	1 cut(s)	114
SfuI	TTCGAA	1 cut(s)	364
SinI	GGWCC	1 cut(s)	413
SmlI	CTYRAG	4 cut(s)	381, 422, 527, 785
SmoI	CTYRAG	4 cut(s)	381, 422, 527, 785
Sse9I	AATT	9 cut(s)	78, 221, 301, 488, 558, 584, 630, 679, 874
SspMI	CTAG	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	339
TaaI	ACNGT	1 cut(s)	376
TaqI	TCGA	2 cut(s)	364, 405
TasI	AATT	9 cut(s)	78, 221, 301, 488, 558, 584, 630, 679, 874
TfiI	GAWTC	1 cut(s)	481
Tru1I	TTAA	5 cut(s)	495, 528, 633, 639, 890
Tru9I	TTAA	5 cut(s)	495, 528, 633, 639, 890
TscAI	CASTG	3 cut(s)	112, 381, 586
TseFI	GTSAC	2 cut(s)	4, 440
TseI	GCWGC	3 cut(s)	54, 607, 648
Tsp45I	GTSAC	2 cut(s)	4, 440
TspDTI	ATGAA	2 cut(s)	347, 742
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	3 cut(s)	112, 381, 586
Vha464I	CTTAAG	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	2 cut(s)	584, 874
XmiI	GTMKAC	1 cut(s)	117
XmnI	GAANNNNTTC	1 cut(s)	875
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.