Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0018419

Physical Location & Seq

Genomic Coordinates Forward (+)

56114353 .. 56116076

Gene Structure 1724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG328400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGGAAGAAGACGATCGAAATCCTCTTCGAAAAGGAAGAAAAAGAAAGAGAAGACGTTTCCGTTGGACAAAATAAGCAACTTACCAAGTGATGTTATACAGCATATTTTGTCATATTTGCACTTCAAGGAGGCAGTGAAAACAAGTGTGTTATCGAAAGCATGGAGACACAAATGGGCTATGCTTCCCTCCCTTGCCTTTGATGATACCGTTGGCAGCTCCATTGAGAGAATTGTCAATCATGTTCTCTTTTCTCACACTGGCCCTGTAGACGCTTTCAAGCTTTCTACCGCAAAAGGTCTGTCTCTAGACACTAGAGATATTGATCTATGGATTTCTCATCTATCGAGTTACTCTATCAAGGAGTTTATACTGAAATTATGGAATAGGAGTTTCAAATACGATGTCTTTTCCCGTTTGTTTTCTTTTCAAGATTTGACTCACTTGGAGTTATGCAATTGTTCCCTAAAACCTCCGTCCACATTCAAAGGCTTCCGGGTGTTGAAGGGCCTTCATATTCGAAGAGTTACAGTGGCTCAAGATGCGTTGGAAAAACTGATCGAGAGTGGTCCTCTTCTTGAGAGAATGACTCTATGTGACATAACGCGTCTCACTCAGCTCAACATTTATGCACAGAATCTCCAATTCCTTAAAGTAGGAGGTGTTTTTCAGGATTTCAGACTTAAGAATACCACAAATCTCGTTGATGTTTCAATTGATGGAAAATGGGACTCCAGTGAATTCTTCAAGTTTTTTGTTCAGCTGCCTATTATTGAAAGGCTCACAATTAAGTTTAAAGGGAGCAACAGGATGAGGTTAAATCAGCCCTACTGGAATTGCAGATTCACCCAACTTCAAGTTTTGAAAGTAACTGGCTATTTTGGCCTACACACAGAGGAAGTAGAGTTCATCAGATCTGTGCTTTCAAGTTCACCTGTGCTCAAGAGGATTGCTCTTCAACCTGTTTCTGGTACCAATGTCTGTTGGGAACTGCCTATAATGTTGAACGATTTTGGGAATGTAGAGAAAAATTTCTTGGCCCCGTTAACTGATTACTATATGCAATCTAATGAGTATTATGATGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

363

Amino Acids

42.1

Weight (kDa)

9.48

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	25 - 63	5.7e-09	F-box domain
LRR_At1g61320_AtMIF1	PF23622	86 - 222	3.7e-12	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	109 - 235	1.8e-10	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018419)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17800
rosa_chinensis	RchiOBHm_Chr1g0365081
rosa_laevigata	RLG00000027446
rosa_multiflora	Rmu_sc0022857.1_g000001 Rmu_sc0034521.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291490 Rroxscaffold_4G00291940
rosa_rugosa	Rorug01G0319400
rosa_samantha	Rh1AG328400 Rh1DG321400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	971
AccB1I	GGYRCC	1 cut(s)	971
AccI	GTMKAC	1 cut(s)	270
AccII	CGCG	1 cut(s)	607
AciI	CCGC	1 cut(s)	291
AcsI	RAATTY	2 cut(s)	740, 1030
AfaI	GTAC	1 cut(s)	973
AfiI	CCNNNNNNNGG	1 cut(s)	968
AflII	CTTAAG	1 cut(s)	683
AflIII	ACRYGT	1 cut(s)	605
AjuI	GAANNNNNNNTTGG	2 cut(s)	1019, 1051
AloI	GAACNNNNNNTCC	2 cut(s)	890, 922
AluBI	AGCT	4 cut(s)	219, 283, 619, 763
AluI	AGCT	4 cut(s)	219, 283, 619, 763
Alw21I	GWGCWC	1 cut(s)	942
Alw26I	GTCTC	3 cut(s)	160, 309, 614
AoxI	GGCC	4 cut(s)	262, 508, 883, 1038
ApeKI	GCWGC	2 cut(s)	216, 763
ApoI	RAATTY	2 cut(s)	740, 1030
ArsI	GACNNNNNNTTYG	4 cut(s)	287, 319, 390, 422
Asp700I	GAANNNNTTC	1 cut(s)	1031
Asp718I	GGTACC	1 cut(s)	971
AspS9I	GGNCC	4 cut(s)	263, 508, 569, 1039
AsuC2I	CCSGG	1 cut(s)	497
AsuHPI	GGTGA	2 cut(s)	838, 924
AsuII	TTCGAA	2 cut(s)	29, 520
AvaII	GGWCC	1 cut(s)	569
BaeI	ACNNNNGTAYC	2 cut(s)	963, 996
BanI	GGYRCC	1 cut(s)	971
BbsI	GAAGAC	2 cut(s)	16, 59
Bbv12I	GWGCWC	1 cut(s)	942
BbvI	GCAGC	2 cut(s)	228, 750
BccI	CCATC	1 cut(s)	713
BcnI	CCSGG	1 cut(s)	497
BcoDI	GTCTC	3 cut(s)	160, 309, 614
BfaI	CTAG	2 cut(s)	308, 315
BfmI	CTRYAG	1 cut(s)	267
BfrI	CTTAAG	1 cut(s)	683
BglII	AGATCT	1 cut(s)	914
BisI	GCNGC	2 cut(s)	217, 764
BlsI	GCNGC	2 cut(s)	218, 765
Bme1390I	CCNGG	1 cut(s)	497
Bme18I	GGWCC	1 cut(s)	569
BmgT120I	GGNCC	4 cut(s)	263, 508, 569, 1039
BmiI	GGNNCC	2 cut(s)	973, 1041
BmrFI	CCNGG	1 cut(s)	497
BmsI	GCATC	1 cut(s)	532
BpiI	GAAGAC	2 cut(s)	16, 59
BplI	GAGNNNNNCTC	6 cut(s)	556, 588, 574, 606, 937, 969
BpmI	CTGGAG	1 cut(s)	718
Bpu14I	TTCGAA	2 cut(s)	29, 520
BpuEI	CTTGAG	3 cut(s)	522, 599, 926
BpuMI	CCSGG	1 cut(s)	497
BsaBI	GATNNNNATC	2 cut(s)	19, 324
BsaXI	ACNNNNNCTCC	2 cut(s)	624, 654
Bsc4I	CCNNNNNNNGG	1 cut(s)	968
Bse1I	ACTGG	4 cut(s)	265, 735, 836, 877
Bse8I	GATNNNNATC	2 cut(s)	19, 324
BseGI	GGATG	1 cut(s)	816
BseJI	GATNNNNATC	2 cut(s)	19, 324
BseLI	CCNNNNNNNGG	1 cut(s)	968
BseMII	CTCAG	1 cut(s)	629
BseNI	ACTGG	4 cut(s)	265, 735, 836, 877
BseXI	GCAGC	2 cut(s)	228, 750
Bsh1236I	CGCG	1 cut(s)	607
Bsh1285I	CGRYCG	1 cut(s)	17
BshFI	GGCC	4 cut(s)	264, 510, 885, 1040
BshNI	GGYRCC	1 cut(s)	971
BsiEI	CGRYCG	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	942
BsiSI	CCGG	1 cut(s)	496
BslFI	GGGAC	1 cut(s)	743
BslI	CCNNNNNNNGG	1 cut(s)	968
BsmAI	GTCTC	3 cut(s)	160, 309, 614
BsmBI	CGTCTC	1 cut(s)	614
BsmFI	GGGAC	1 cut(s)	743
BsnI	GGCC	4 cut(s)	264, 510, 885, 1040
Bsp119I	TTCGAA	2 cut(s)	29, 520
Bsp1286I	GDGCHC	1 cut(s)	942
Bsp143I	GATC	4 cut(s)	14, 325, 558, 914
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	4 cut(s)	264, 510, 885, 1040
BspCNI	CTCAG	1 cut(s)	628
BspFNI	CGCG	1 cut(s)	607
BspLI	GGNNCC	2 cut(s)	973, 1041
BspQI	GCTCTTC	1 cut(s)	960
BspT104I	TTCGAA	2 cut(s)	29, 520
BspT107I	GGYRCC	1 cut(s)	971
BspTI	CTTAAG	1 cut(s)	683
BsrI	ACTGG	4 cut(s)	265, 735, 836, 877
BssMI	GATC	4 cut(s)	14, 325, 558, 914
Bst4CI	ACNGT	2 cut(s)	211, 532
Bst6I	CTCTTC	4 cut(s)	31, 517, 579, 960
BstAFI	CTTAAG	1 cut(s)	683
BstBI	TTCGAA	2 cut(s)	29, 520
BstDEI	CTNAG	1 cut(s)	615
BstF5I	GGATG	1 cut(s)	816
BstFNI	CGCG	1 cut(s)	607
BstKTI	GATC	4 cut(s)	17, 328, 561, 917
BstMAI	GTCTC	3 cut(s)	160, 309, 614
BstMBI	GATC	4 cut(s)	14, 325, 558, 914
BstMCI	CGRYCG	1 cut(s)	17
BstMWI	GCNNNNNNNGC	2 cut(s)	542, 882
BstSCI	CCNGG	1 cut(s)	495
BstSFI	CTRYAG	1 cut(s)	267
BstUI	CGCG	1 cut(s)	607
BstV1I	GCAGC	2 cut(s)	228, 750
BstV2I	GAAGAC	2 cut(s)	16, 59
BstX2I	RGATCY	1 cut(s)	914
BstYI	RGATCY	1 cut(s)	914
BsuRI	GGCC	4 cut(s)	264, 510, 885, 1040
BtsCI	GGATG	1 cut(s)	816
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	4 cut(s)	141, 258, 537, 742
Cfr13I	GGNCC	4 cut(s)	263, 508, 569, 1039
CseI	GACGC	2 cut(s)	281, 596
Csp6I	GTAC	1 cut(s)	972
CviAII	CATG	2 cut(s)	162, 242
CviQI	GTAC	1 cut(s)	972
DdeI	CTNAG	1 cut(s)	615
DpnI	GATC	4 cut(s)	16, 327, 560, 916
DpnII	GATC	4 cut(s)	14, 325, 558, 914
DraI	TTTAAA	1 cut(s)	796
Eam1104I	CTCTTC	4 cut(s)	31, 517, 579, 960
EarI	CTCTTC	4 cut(s)	31, 517, 579, 960
Eco47I	GGWCC	1 cut(s)	569
EcoO109I	RGGNCCY	1 cut(s)	508
EcoRI	GAATTC	1 cut(s)	740
Esp3I	CGTCTC	1 cut(s)	614
FaeI	CATG	2 cut(s)	165, 245
FaqI	GGGAC	1 cut(s)	743
FatI	CATG	2 cut(s)	161, 241
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	2 cut(s)	217, 764
FokI	GGATG	1 cut(s)	823
Fsp4HI	GCNGC	2 cut(s)	217, 764
FspBI	CTAG	2 cut(s)	308, 315
GluI	GCNGC	2 cut(s)	217, 764
GsuI	CTGGAG	1 cut(s)	718
HaeIII	GGCC	4 cut(s)	264, 510, 885, 1040
HapII	CCGG	1 cut(s)	496
HgaI	GACGC	2 cut(s)	281, 596
Hin1II	CATG	2 cut(s)	165, 245
HincII	GTYRAC	1 cut(s)	1047
HindII	GTYRAC	1 cut(s)	1047
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	5 cut(s)	439, 589, 637, 731, 843
HpaI	GTTAAC	1 cut(s)	1047
HpaII	CCGG	1 cut(s)	496
HphI	GGTGA	2 cut(s)	838, 924
Hpy166II	GTNNAC	4 cut(s)	271, 480, 932, 1047
Hpy188I	TCNGA	2 cut(s)	680, 914
Hpy188III	TCNNGA	7 cut(s)	308, 431, 539, 562, 578, 671, 943
Hpy8I	GTNNAC	4 cut(s)	271, 480, 932, 1047
HpyAV	CCTTC	2 cut(s)	499, 521
HpyCH4III	ACNGT	2 cut(s)	211, 532
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	5 cut(s)	121, 456, 632, 840, 1063
HpyF10VI	GCNNNNNNNGC	2 cut(s)	542, 882
HpyF3I	CTNAG	1 cut(s)	615
HpySE526I	ACGT	1 cut(s)	56
Hsp92II	CATG	2 cut(s)	165, 245
KpnI	GGTACC	1 cut(s)	975
KspAI	GTTAAC	1 cut(s)	1047
Kzo9I	GATC	4 cut(s)	14, 325, 558, 914
LguI	GCTCTTC	1 cut(s)	960
LmnI	GCTCC	2 cut(s)	224, 801
Lsp1109I	GCAGC	2 cut(s)	228, 750
LweI	GCATC	1 cut(s)	532
MaeI	CTAG	2 cut(s)	308, 315
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	4 cut(s)	350, 526, 596, 868
MalI	GATC	4 cut(s)	16, 327, 560, 916
MboI	GATC	4 cut(s)	14, 325, 558, 914
MboII	GAAGA	9 cut(s)	18, 18, 21, 49, 64, 534, 566, 736, 947
MfeI	CAATTG	2 cut(s)	457, 714
MflI	RGATCY	1 cut(s)	914
MhlI	GDGCHC	1 cut(s)	942
MluCI	AATT	9 cut(s)	231, 377, 457, 644, 714, 740, 786, 835, 1030
MluI	ACGCGT	1 cut(s)	605
MlyI	GAGTC	3 cut(s)	433, 583, 725
MmeI	TCCRAC	2 cut(s)	45, 528
MroXI	GAANNNNTTC	1 cut(s)	1031
MseI	TTAA	6 cut(s)	651, 684, 789, 795, 818, 1046
MspA1I	CMGCKG	1 cut(s)	763
MspCI	CTTAAG	1 cut(s)	683
MspI	CCGG	1 cut(s)	496
MspR9I	CCNGG	1 cut(s)	497
MunI	CAATTG	2 cut(s)	457, 714
MvnI	CGCG	1 cut(s)	607
MwoI	GCNNNNNNNGC	2 cut(s)	542, 882
NciI	CCSGG	1 cut(s)	497
NdeII	GATC	4 cut(s)	14, 325, 558, 914
NlaIII	CATG	2 cut(s)	165, 245
NlaIV	GGNNCC	2 cut(s)	973, 1041
NmuCI	GTSAC	1 cut(s)	596
NspV	TTCGAA	2 cut(s)	29, 520
PciSI	GCTCTTC	1 cut(s)	960
PdmI	GAANNNNTTC	1 cut(s)	1031
PfeI	GAWTC	2 cut(s)	637, 843
PkrI	GCNGC	2 cut(s)	218, 765
Ple19I	CGATCG	1 cut(s)	17
PleI	GAGTC	3 cut(s)	433, 583, 725
PpsI	GAGTC	3 cut(s)	433, 583, 725
PspN4I	GGNNCC	2 cut(s)	973, 1041
PspPI	GGNCC	4 cut(s)	263, 508, 569, 1039
PsuI	RGATCY	1 cut(s)	914
PvuI	CGATCG	1 cut(s)	17
PvuII	CAGCTG	1 cut(s)	763
RsaI	GTAC	1 cut(s)	973
RsaNI	GTAC	1 cut(s)	972
SapI	GCTCTTC	1 cut(s)	960
SaqAI	TTAA	6 cut(s)	651, 684, 789, 795, 818, 1046
SatI	GCNGC	2 cut(s)	217, 764
Sau3AI	GATC	4 cut(s)	14, 325, 558, 914
Sau96I	GGNCC	4 cut(s)	263, 508, 569, 1039
SchI	GAGTC	3 cut(s)	433, 583, 725
ScrFI	CCNGG	1 cut(s)	497
SduI	GDGCHC	1 cut(s)	942
SfaNI	GCATC	1 cut(s)	532
SfcI	CTRYAG	1 cut(s)	267
SfuI	TTCGAA	2 cut(s)	29, 520
SinI	GGWCC	1 cut(s)	569
SmlI	CTYRAG	4 cut(s)	537, 578, 683, 941
SmoI	CTYRAG	4 cut(s)	537, 578, 683, 941
Sse9I	AATT	9 cut(s)	231, 377, 457, 644, 714, 740, 786, 835, 1030
SsiI	CCGC	1 cut(s)	291
SspMI	CTAG	2 cut(s)	308, 315
StyD4I	CCNGG	1 cut(s)	495
TaaI	ACNGT	2 cut(s)	211, 532
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	6 cut(s)	17, 29, 155, 347, 520, 561
TasI	AATT	9 cut(s)	231, 377, 457, 644, 714, 740, 786, 835, 1030
TfiI	GAWTC	2 cut(s)	637, 843
Tru1I	TTAA	6 cut(s)	651, 684, 789, 795, 818, 1046
Tru9I	TTAA	6 cut(s)	651, 684, 789, 795, 818, 1046
TscAI	CASTG	4 cut(s)	141, 265, 537, 742
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	2 cut(s)	216, 763
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	2 cut(s)	503, 898
TspGWI	ACGGA	2 cut(s)	51, 465
TspRI	CASTG	4 cut(s)	141, 265, 537, 742
Vha464I	CTTAAG	1 cut(s)	683
VpaK11BI	GGWCC	1 cut(s)	569
XapI	RAATTY	2 cut(s)	740, 1030
XbaI	TCTAGA	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	270
XmnI	GAANNNNTTC	1 cut(s)	1031
XspI	CTAG	2 cut(s)	308, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.