Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028977.1

Orthogroup ID

OG0008189

Physical Location & Seq

Genomic Coordinates Reverse (-)

11880 .. 15053

Gene Structure 3174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028977.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

atgggttgcatgtattgcaagccctctgcaattgaggatagcaaggagagccccagagagcgattgtccaacaaggcagcatcagactcgcgggctgcgagggtggcttcctcaaggagagaggaaccttatcgtgcaaaagatcgaaatgatagcaatgacgggagagcaatgttgattgataagcactcaaatggggccgctcgatcacatggtgacaattatcagaggaagagggagaaaatggagtatgttgctcctctacatcccgggatgggcagcattccgaaagctgcagaaggagaacaggtcgcagcagggtggccatcctggctagctggagtggctggagaggccattaaggggtggataccacgtcgtgcagattcatttgagaagctagacaaaattggtcagggaacatatagcaacgtctatagggctcgtgatcttgatcaaaagaaaattgtagcgttgaagaaagtgaggtttgataactcagagcccgagagtgttcgctttatggcaagggaaattctcatcttacggaggcttgatcatcaaaatgtgataaaactagaaggtctagttacgtcaaggatgtcttgcagcttgtaccttgtttttgagtacatggagcatgatttggcggggcttgctttacaccctggcctgaaatttacagaagcacaggttaaatgttacatgcagcaactattatgtgggcttgatcactgtcacagtcgtggggttctgcatcgtgacattaaaggttccaaccttttaattgacaacagtggcatgttgaaaattgctgactttggtctggcgagtatttttgatccccatcaaaatcagcctctaactagccgtgttgtaactctttggtaccgaccgcctgagcttttacttggtgctacttactatgggactgccgttgatctgtggagtacaggttgcatactcgctgaactctatgctggcaaaccgattatgccgggaagaaccgaggtatgtatagttgtttccctcttgagtctgtcaagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

349

Amino Acids

39.02

Weight (kDa)

8.99

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53050 AT1G53050
fragaria_vesca	FvH4_3g19930 FvH4_3g19930
malus_domestica	MD03G1227900.v1.1 MD11G1247100.v1.1
prunus_persica	Prupe.4G181100_v2.0.a1 Prupe.4G181100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0033611
rosa_laevigata	RLG00000033493
rosa_multiflora	Rmu_sc0001768.1_g000013 Rmu_sc0028977.1_g000003 Rmu_sc0029583.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046470
rosa_rugosa	Rorug05G0140900 Rorug05G0141000 Rorug05G0141100
rosa_samantha	Rh5AG232200 Rh5BG232900 Rh5CG261800 Rh5DG238500
rosa_wichuraiana	Rw5G021190 Rw5G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	888
AccB1I	GGYRCC	1 cut(s)	888
AccBSI	CCGCTC	1 cut(s)	203
AccII	CGCG	1 cut(s)	91
AciI	CCGC	4 cut(s)	91, 201, 650, 896
AclWI	GGATC	1 cut(s)	836
AcoI	YGGCCR	1 cut(s)	323
AcsI	RAATTY	2 cut(s)	534, 677
AdeI	CACNNNGTG	2 cut(s)	215, 380
AfaI	GTAC	4 cut(s)	617, 632, 890, 952
AfiI	CCNNNNNNNGG	2 cut(s)	275, 363
AgsI	TTSAA	2 cut(s)	478, 808
AjiI	CACGTC	1 cut(s)	377
AjnI	CCWGG	2 cut(s)	329, 667
AleI	CACNNNNGTG	1 cut(s)	744
AluBI	AGCT	5 cut(s)	293, 338, 400, 612, 904
AluI	AGCT	5 cut(s)	293, 338, 400, 612, 904
AlwI	GGATC	1 cut(s)	836
Ama87I	CYCGRG	2 cut(s)	269, 506
AoxI	GGCC	4 cut(s)	198, 323, 354, 670
ApeKI	GCWGC	7 cut(s)	77, 95, 279, 293, 314, 609, 709
ApoI	RAATTY	2 cut(s)	534, 677
Asp718I	GGTACC	1 cut(s)	888
AspS9I	GGNCC	1 cut(s)	198
AsuC2I	CCSGG	3 cut(s)	270, 271, 999
AsuHPI	GGTGA	1 cut(s)	227
AsuNHI	GCTAGC	1 cut(s)	334
AvaI	CYCGRG	2 cut(s)	269, 506
BalI	TGGCCA	1 cut(s)	325
BanI	GGYRCC	1 cut(s)	888
BanII	GRGCYC	3 cut(s)	53, 445, 507
BauI	CACGAG	1 cut(s)	444
BbvI	GCAGC	7 cut(s)	82, 89, 280, 291, 326, 621, 721
BccI	CCATC	3 cut(s)	268, 334, 855
BceAI	ACGGC	2 cut(s)	855, 920
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BciT130I	CCWGG	2 cut(s)	331, 669
BciVI	GTATCC	1 cut(s)	363
BclI	TGATCA	3 cut(s)	454, 556, 730
BcnI	CCSGG	3 cut(s)	270, 271, 999
BfaI	CTAG	5 cut(s)	335, 401, 578, 587, 867
BfmI	CTRYAG	2 cut(s)	294, 436
BfuI	GTATCC	1 cut(s)	363
BglI	GCCNNNNNGGC	1 cut(s)	331
BisI	GCNGC	8 cut(s)	78, 96, 201, 280, 294, 315, 610, 710
BlsI	GCNGC	8 cut(s)	79, 97, 202, 281, 295, 316, 611, 711
Bme1390I	CCNGG	5 cut(s)	270, 271, 331, 669, 999
BmeT110I	CYCGRG	2 cut(s)	269, 506
BmgBI	CACGTC	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	198
BmiI	GGNNCC	4 cut(s)	126, 199, 775, 890
BmrFI	CCNGG	5 cut(s)	270, 271, 331, 669, 999
BmsI	GCATC	2 cut(s)	89, 766
BmtI	GCTAGC	1 cut(s)	338
BoxI	GACNNNNGTC	1 cut(s)	822
BpmI	CTGGAG	2 cut(s)	360, 369
Bpu10I	CCTNAGC	1 cut(s)	900
BpuEI	CTTGAG	1 cut(s)	97
BpuMI	CCSGG	3 cut(s)	270, 271, 999
BsaBI	GATNNNNATC	2 cut(s)	453, 846
BsaJI	CCNNGG	3 cut(s)	269, 667, 1008
BsaXI	ACNNNNNCTCC	4 cut(s)	294, 324, 940, 970
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 363
Bse3DI	GCAATG	2 cut(s)	163, 177
Bse8I	GATNNNNATC	2 cut(s)	453, 846
BseBI	CCWGG	2 cut(s)	331, 669
BseDI	CCNNGG	3 cut(s)	269, 667, 1008
BseGI	GGATG	4 cut(s)	265, 279, 326, 606
BseJI	GATNNNNATC	2 cut(s)	453, 846
BseLI	CCNNNNNNNGG	2 cut(s)	275, 363
BseMI	GCAATG	2 cut(s)	163, 177
BseMII	CTCAG	2 cut(s)	513, 891
BseRI	GAGGAG	1 cut(s)	249
BseXI	GCAGC	7 cut(s)	82, 89, 280, 291, 326, 621, 721
BsgI	GTGCAG	1 cut(s)	402
Bsh1236I	CGCG	1 cut(s)	91
Bsh1285I	CGRYCG	1 cut(s)	896
BshFI	GGCC	4 cut(s)	200, 325, 356, 672
BshNI	GGYRCC	1 cut(s)	888
BsiEI	CGRYCG	1 cut(s)	896
BsiHKCI	CYCGRG	2 cut(s)	269, 506
BsiSI	CCGG	2 cut(s)	270, 998
BslFI	GGGAC	1 cut(s)	943
BslI	CCNNNNNNNGG	2 cut(s)	275, 363
BsmFI	GGGAC	1 cut(s)	943
BsmI	GAATGC	1 cut(s)	282
BsnI	GGCC	4 cut(s)	200, 325, 356, 672
BsoBI	CYCGRG	2 cut(s)	269, 506
Bsp1286I	GDGCHC	3 cut(s)	53, 445, 507
Bsp143I	GATC	8 cut(s)	142, 206, 448, 454, 556, 730, 841, 940
BspACI	CCGC	4 cut(s)	91, 201, 650, 896
BspANI	GGCC	4 cut(s)	200, 325, 356, 672
BspCNI	CTCAG	2 cut(s)	512, 892
BspFNI	CGCG	1 cut(s)	91
BspLI	GGNNCC	4 cut(s)	126, 199, 775, 890
BspMAI	CTGCAG	1 cut(s)	298
BspOI	GCTAGC	1 cut(s)	338
BspPI	GGATC	1 cut(s)	836
BspT107I	GGYRCC	1 cut(s)	888
BsrBI	CCGCTC	1 cut(s)	203
BsrDI	GCAATG	2 cut(s)	163, 177
BssECI	CCNNGG	3 cut(s)	269, 667, 1008
BssMI	GATC	8 cut(s)	142, 206, 448, 454, 556, 730, 841, 940
BssSI	CACGAG	1 cut(s)	444
Bst2BI	CACGAG	1 cut(s)	444
Bst2UI	CCWGG	2 cut(s)	331, 669
Bst4CI	ACNGT	3 cut(s)	737, 743, 797
Bst6I	CTCTTC	1 cut(s)	227
BstAPI	GCANNNNNTGC	1 cut(s)	15
BstC8I	GCNNGC	5 cut(s)	20, 93, 336, 657, 982
BstDEI	CTNAG	2 cut(s)	499, 900
BstF5I	GGATG	4 cut(s)	265, 279, 326, 606
BstFNI	CGCG	1 cut(s)	91
BstKTI	GATC	8 cut(s)	145, 209, 451, 457, 559, 733, 844, 943
BstMBI	GATC	8 cut(s)	142, 206, 448, 454, 556, 730, 841, 940
BstMCI	CGRYCG	1 cut(s)	896
BstMWI	GCNNNNNNNGC	7 cut(s)	15, 48, 104, 331, 344, 353, 656
BstNI	CCWGG	2 cut(s)	331, 669
BstNSI	RCATGY	3 cut(s)	13, 709, 805
BstPAI	GACNNNNGTC	1 cut(s)	822
BstSCI	CCNGG	5 cut(s)	268, 269, 329, 667, 997
BstSFI	CTRYAG	2 cut(s)	294, 436
BstUI	CGCG	1 cut(s)	91
BstV1I	GCAGC	7 cut(s)	82, 89, 280, 291, 326, 621, 721
BsuI	GTATCC	1 cut(s)	363
BsuRI	GGCC	4 cut(s)	200, 325, 356, 672
BtrI	CACGTC	1 cut(s)	377
BtsCI	GGATG	4 cut(s)	265, 279, 326, 606
BtsIMutI	CAGTG	2 cut(s)	733, 802
Cac8I	GCNNGC	5 cut(s)	20, 93, 336, 657, 982
Cfr13I	GGNCC	1 cut(s)	198
Cfr9I	CCCGGG	1 cut(s)	269
Csp6I	GTAC	4 cut(s)	616, 631, 889, 951
CviAII	CATG	6 cut(s)	10, 212, 634, 641, 706, 802
CviQI	GTAC	4 cut(s)	616, 631, 889, 951
DdeI	CTNAG	2 cut(s)	499, 900
DpnI	GATC	8 cut(s)	144, 208, 450, 456, 558, 732, 843, 942
DpnII	GATC	8 cut(s)	142, 206, 448, 454, 556, 730, 841, 940
DraIII	CACNNNGTG	2 cut(s)	215, 380
EaeI	YGGCCR	1 cut(s)	323
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Eco24I	GRGCYC	3 cut(s)	53, 445, 507
Eco88I	CYCGRG	2 cut(s)	269, 506
EcoRII	CCWGG	2 cut(s)	329, 667
EcoT38I	GRGCYC	3 cut(s)	53, 445, 507
FaeI	CATG	6 cut(s)	13, 215, 637, 644, 709, 805
FalI	AAGNNNNNCTT	2 cut(s)	589, 621
FaqI	GGGAC	1 cut(s)	943
FatI	CATG	6 cut(s)	9, 211, 633, 640, 705, 801
FauI	CCCGC	2 cut(s)	84, 643
FbaI	TGATCA	3 cut(s)	454, 556, 730
Fnu4HI	GCNGC	8 cut(s)	78, 96, 201, 280, 294, 315, 610, 710
FokI	GGATG	4 cut(s)	252, 286, 313, 613
FriOI	GRGCYC	3 cut(s)	53, 445, 507
Fsp4HI	GCNGC	8 cut(s)	78, 96, 201, 280, 294, 315, 610, 710
FspBI	CTAG	5 cut(s)	335, 401, 578, 587, 867
GluI	GCNGC	8 cut(s)	78, 96, 201, 280, 294, 315, 610, 710
GsuI	CTGGAG	2 cut(s)	360, 369
HaeIII	GGCC	4 cut(s)	200, 325, 356, 672
HapII	CCGG	2 cut(s)	270, 998
Hin1II	CATG	6 cut(s)	13, 215, 637, 644, 709, 805
HinfI	GANTC	3 cut(s)	86, 386, 1036
HpaII	CCGG	2 cut(s)	270, 998
HphI	GGTGA	1 cut(s)	227
Hpy188I	TCNGA	4 cut(s)	85, 228, 288, 502
Hpy188III	TCNNGA	5 cut(s)	446, 452, 761, 1033, 1044
Hpy99I	CGWCG	1 cut(s)	381
HpyAV	CCTTC	2 cut(s)	293, 575
HpyCH4III	ACNGT	3 cut(s)	737, 743, 797
HpyCH4IV	ACGT	3 cut(s)	376, 432, 593
HpyF10VI	GCNNNNNNNGC	7 cut(s)	15, 48, 104, 331, 344, 353, 656
HpyF3I	CTNAG	2 cut(s)	499, 900
HpySE526I	ACGT	3 cut(s)	376, 432, 593
Hsp92II	CATG	6 cut(s)	13, 215, 637, 644, 709, 805
KpnI	GGTACC	1 cut(s)	892
Ksp22I	TGATCA	3 cut(s)	454, 556, 730
Kzo9I	GATC	8 cut(s)	142, 206, 448, 454, 556, 730, 841, 940
LmnI	GCTCC	2 cut(s)	262, 637
Lsp1109I	GCAGC	7 cut(s)	82, 89, 280, 291, 326, 621, 721
LweI	GCATC	2 cut(s)	89, 766
MaeI	CTAG	5 cut(s)	335, 401, 578, 587, 867
MaeII	ACGT	3 cut(s)	376, 432, 593
MaeIII	GTNAC	6 cut(s)	215, 589, 701, 737, 761, 877
MalI	GATC	8 cut(s)	144, 208, 450, 456, 558, 732, 843, 942
MbiI	CCGCTC	1 cut(s)	203
MboI	GATC	8 cut(s)	142, 206, 448, 454, 556, 730, 841, 940
MboII	GAAGA	3 cut(s)	244, 490, 1014
MfeI	CAATTG	1 cut(s)	30
MhlI	GDGCHC	3 cut(s)	53, 445, 507
MlsI	TGGCCA	1 cut(s)	325
MluCI	AATT	8 cut(s)	30, 220, 408, 465, 534, 677, 786, 810
MluNI	TGGCCA	1 cut(s)	325
MlyI	GAGTC	2 cut(s)	80, 1045
MmeI	TCCRAC	2 cut(s)	93, 801
Mox20I	TGGCCA	1 cut(s)	325
MscI	TGGCCA	1 cut(s)	325
MseI	TTAA	4 cut(s)	360, 696, 768, 785
MslI	CAYNNNNRTG	3 cut(s)	192, 564, 744
Msp20I	TGGCCA	1 cut(s)	325
MspI	CCGG	2 cut(s)	270, 998
MspR9I	CCNGG	5 cut(s)	270, 271, 331, 669, 999
MunI	CAATTG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	282
MvaI	CCWGG	2 cut(s)	331, 669
MvnI	CGCG	1 cut(s)	91
MwoI	GCNNNNNNNGC	7 cut(s)	15, 48, 104, 331, 344, 353, 656
NciI	CCSGG	3 cut(s)	270, 271, 999
NdeII	GATC	8 cut(s)	142, 206, 448, 454, 556, 730, 841, 940
NheI	GCTAGC	1 cut(s)	334
NlaIII	CATG	6 cut(s)	13, 215, 637, 644, 709, 805
NlaIV	GGNNCC	4 cut(s)	126, 199, 775, 890
NmuCI	GTSAC	3 cut(s)	215, 737, 761
NspI	RCATGY	3 cut(s)	13, 709, 805
OliI	CACNNNNGTG	1 cut(s)	744
PcsI	WCGNNNNNNNCGW	1 cut(s)	95
PctI	GAATGC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	386
PkrI	GCNGC	8 cut(s)	79, 97, 202, 281, 295, 316, 611, 711
PleI	GAGTC	2 cut(s)	80, 1044
PpsI	GAGTC	2 cut(s)	80, 1044
PshAI	GACNNNNGTC	1 cut(s)	822
Psp6I	CCWGG	2 cut(s)	329, 667
PspGI	CCWGG	2 cut(s)	329, 667
PspN4I	GGNNCC	4 cut(s)	126, 199, 775, 890
PspPI	GGNCC	1 cut(s)	198
PstI	CTGCAG	1 cut(s)	298
RsaI	GTAC	4 cut(s)	617, 632, 890, 952
RsaNI	GTAC	4 cut(s)	616, 631, 889, 951
RseI	CAYNNNNRTG	3 cut(s)	192, 564, 744
SaqAI	TTAA	4 cut(s)	360, 696, 768, 785
SatI	GCNGC	8 cut(s)	78, 96, 201, 280, 294, 315, 610, 710
Sau3AI	GATC	8 cut(s)	142, 206, 448, 454, 556, 730, 841, 940
Sau96I	GGNCC	1 cut(s)	198
SchI	GAGTC	2 cut(s)	80, 1045
ScrFI	CCNGG	5 cut(s)	270, 271, 331, 669, 999
SduI	GDGCHC	3 cut(s)	53, 445, 507
SfaNI	GCATC	2 cut(s)	89, 766
SfcI	CTRYAG	2 cut(s)	294, 436
SmaI	CCCGGG	1 cut(s)	271
SmiMI	CAYNNNNRTG	3 cut(s)	192, 564, 744
SmlI	CTYRAG	2 cut(s)	112, 1033
SmoI	CTYRAG	2 cut(s)	112, 1033
Sse9I	AATT	8 cut(s)	30, 220, 408, 465, 534, 677, 786, 810
SsiI	CCGC	4 cut(s)	91, 201, 650, 896
SspMI	CTAG	5 cut(s)	335, 401, 578, 587, 867
StyD4I	CCNGG	5 cut(s)	268, 269, 329, 667, 997
TaaI	ACNGT	3 cut(s)	737, 743, 797
TaiI	ACGT	3 cut(s)	379, 435, 596
TaqI	TCGA	2 cut(s)	145, 205
TasI	AATT	8 cut(s)	30, 220, 408, 465, 534, 677, 786, 810
TatI	WGTACW	2 cut(s)	630, 950
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	4 cut(s)	360, 696, 768, 785
Tru9I	TTAA	4 cut(s)	360, 696, 768, 785
TscAI	CASTG	2 cut(s)	740, 802
TseFI	GTSAC	3 cut(s)	215, 737, 761
TseI	GCWGC	7 cut(s)	77, 95, 279, 293, 314, 609, 709
Tsp45I	GTSAC	3 cut(s)	215, 737, 761
TspDTI	ATGAA	1 cut(s)	378
TspGWI	ACGGA	1 cut(s)	562
TspMI	CCCGGG	1 cut(s)	269
TspRI	CASTG	2 cut(s)	740, 802
XapI	RAATTY	2 cut(s)	534, 677
XceI	RCATGY	3 cut(s)	13, 709, 805
XmaI	CCCGGG	1 cut(s)	269
XspI	CTAG	5 cut(s)	335, 401, 578, 587, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.