Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008189

Physical Location & Seq

Genomic Coordinates Forward (+)

12885175 .. 12885902

Gene Structure 728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0140900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAGAAAAAATTGCGGCATTTGCAATAGTAGCCTGACAAGAGGGCTAAGCAAATCTATCTACACAGCTGAGTGCTATGATGTTTTCCATTACCGTTGCATTGTCAACAATGTCCAGCATGGAAATCTTCACTGCCCCGTCTGCCGAGCAAAGTGGGATAAGAATAATGTACCTTTCCAAGTTCTCCCTCCACAGCAAAACAACTCGGGTGGTATCCCTCCTCACTTCTCATTTCCATCGCAGCAGCTACCGATTTGGCCTTACCAATCCATGGAGGAACTTGAGTACCCTCCTGAGCCACCTACCTTCTCTGATGATGAACCTCTCCCATCCTTCACCTCACCTGTTCAATCCTCTTCCCACCAGAATATAACACTCAAGACTCATACAGAGTCCTCTGCTATCTCTGTTGGCTGCTGCAGAATCAAGCCCAAATTTTTCTGTCCTTGTCAGAATCGGTGCACCACCCCTTCAGGATTCTGTGGCCTGAGGGCCATGGTCGTACACCCATTGACCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

173

Amino Acids

19.42

Weight (kDa)

8.27

Isoelectric Point (pI)

56.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_2	PF13923	5 - 48	8.1e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53050 AT1G53050
fragaria_vesca	FvH4_3g19930 FvH4_3g19930
malus_domestica	MD03G1227900.v1.1 MD11G1247100.v1.1
prunus_persica	Prupe.4G181100_v2.0.a1 Prupe.4G181100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0033611
rosa_laevigata	RLG00000033493
rosa_multiflora	Rmu_sc0001768.1_g000013 Rmu_sc0028977.1_g000003 Rmu_sc0029583.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046470
rosa_rugosa	Rorug05G0140900 Rorug05G0141000 Rorug05G0141100
rosa_samantha	Rh5AG232200 Rh5BG232900 Rh5CG261800 Rh5DG238500
rosa_wichuraiana	Rw5G021190 Rw5G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	271
AciI	CCGC	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	434
AcuI	CTGAAG	1 cut(s)	456
AfaI	GTAC	3 cut(s)	171, 287, 504
AfiI	CCNNNNNNNGG	1 cut(s)	271
AgsI	TTSAA	1 cut(s)	350
AluBI	AGCT	2 cut(s)	68, 247
AluI	AGCT	2 cut(s)	68, 247
Alw21I	GWGCWC	1 cut(s)	464
Alw44I	GTGCAC	1 cut(s)	460
Ama87I	CYCGRG	1 cut(s)	205
AoxI	GGCC	3 cut(s)	257, 484, 492
ApaLI	GTGCAC	1 cut(s)	460
ApeKI	GCWGC	4 cut(s)	241, 244, 414, 417
ApoI	RAATTY	1 cut(s)	434
AspS9I	GGNCC	1 cut(s)	492
AsuHPI	GGTGA	2 cut(s)	328, 333
AvaI	CYCGRG	1 cut(s)	205
AxyI	CCTNAGG	1 cut(s)	488
BaeGI	GKGCMC	1 cut(s)	464
BaeI	ACNNNNGTAYC	2 cut(s)	269, 302
Bbv12I	GWGCWC	1 cut(s)	464
BbvI	GCAGC	4 cut(s)	253, 256, 401, 404
BccI	CCATC	2 cut(s)	244, 337
BciVI	GTATCC	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	418
BfuI	GTATCC	1 cut(s)	224
BisI	GCNGC	5 cut(s)	16, 242, 245, 415, 418
BlpI	GCTNAGC	1 cut(s)	47
BlsI	GCNGC	5 cut(s)	17, 243, 246, 416, 419
BmeT110I	CYCGRG	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	492
Bpu10I	CCTNAGC	1 cut(s)	294
Bpu1102I	GCTNAGC	1 cut(s)	47
BpuEI	CTTGAG	2 cut(s)	302, 362
BsaJI	CCNNGG	2 cut(s)	270, 495
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse21I	CCTNAGG	1 cut(s)	488
BseDI	CCNNGG	2 cut(s)	270, 495
BseGI	GGATG	1 cut(s)	329
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMII	CTCAG	3 cut(s)	60, 285, 479
BseRI	GAGGAG	1 cut(s)	210
BseSI	GKGCMC	1 cut(s)	464
BseXI	GCAGC	4 cut(s)	253, 256, 401, 404
BshFI	GGCC	3 cut(s)	259, 486, 494
BsiHKAI	GWGCWC	1 cut(s)	464
BsiHKCI	CYCGRG	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	271
BsnI	GGCC	3 cut(s)	259, 486, 494
BsoBI	CYCGRG	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp1720I	GCTNAGC	1 cut(s)	47
Bsp19I	CCATGG	2 cut(s)	270, 495
BspACI	CCGC	1 cut(s)	15
BspANI	GGCC	3 cut(s)	259, 486, 494
BspCNI	CTCAG	3 cut(s)	61, 286, 480
BspMAI	CTGCAG	1 cut(s)	422
BssECI	CCNNGG	2 cut(s)	270, 495
BssT1I	CCWWGG	2 cut(s)	270, 495
Bst4CI	ACNGT	1 cut(s)	95
Bst6I	CTCTTC	1 cut(s)	361
BstDEI	CTNAG	4 cut(s)	47, 69, 294, 488
BstDSI	CCRYGG	2 cut(s)	270, 495
BstF5I	GGATG	1 cut(s)	329
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 30, 141
BstSFI	CTRYAG	1 cut(s)	418
BstSLI	GKGCMC	1 cut(s)	464
BstV1I	GCAGC	4 cut(s)	253, 256, 401, 404
Bsu36I	CCTNAGG	1 cut(s)	488
BsuI	GTATCC	1 cut(s)	224
BsuRI	GGCC	3 cut(s)	259, 486, 494
BtgI	CCRYGG	2 cut(s)	270, 495
BtgZI	GCGATG	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	329
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	492
Csp6I	GTAC	3 cut(s)	170, 286, 503
CspCI	CAANNNNNGTGG	2 cut(s)	190, 225
CviAII	CATG	3 cut(s)	119, 271, 496
CviQI	GTAC	3 cut(s)	170, 286, 503
DdeI	CTNAG	4 cut(s)	47, 69, 294, 488
Eam1104I	CTCTTC	1 cut(s)	361
EarI	CTCTTC	1 cut(s)	361
Eco130I	CCWWGG	2 cut(s)	270, 495
Eco57I	CTGAAG	1 cut(s)	456
Eco81I	CCTNAGG	1 cut(s)	488
Eco88I	CYCGRG	1 cut(s)	205
EcoT14I	CCWWGG	2 cut(s)	270, 495
ErhI	CCWWGG	2 cut(s)	270, 495
FaeI	CATG	3 cut(s)	122, 274, 499
FaiI	YATR	6 cut(s)	78, 120, 272, 371, 387, 497
FatI	CATG	3 cut(s)	118, 270, 495
Fnu4HI	GCNGC	5 cut(s)	16, 242, 245, 415, 418
FokI	GGATG	1 cut(s)	316
Fsp4HI	GCNGC	5 cut(s)	16, 242, 245, 415, 418
GluI	GCNGC	5 cut(s)	16, 242, 245, 415, 418
HaeIII	GGCC	3 cut(s)	259, 486, 494
Hin1II	CATG	3 cut(s)	122, 274, 499
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	5 cut(s)	382, 392, 423, 454, 477
HphI	GGTGA	2 cut(s)	328, 333
Hpy166II	GTNNAC	3 cut(s)	106, 462, 505
Hpy188I	TCNGA	2 cut(s)	313, 453
Hpy188III	TCNNGA	3 cut(s)	293, 379, 474
Hpy8I	GTNNAC	3 cut(s)	106, 462, 505
HpyAV	CCTTC	3 cut(s)	316, 343, 480
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	4 cut(s)	24, 99, 420, 462
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 30, 141
HpyF3I	CTNAG	4 cut(s)	47, 69, 294, 488
Hsp92II	CATG	3 cut(s)	122, 274, 499
LpnPI	CCDG	7 cut(s)	47, 128, 306, 357, 377, 459, 500
Lsp1109I	GCAGC	4 cut(s)	253, 256, 401, 404
MboII	GAAGA	2 cut(s)	119, 348
MhlI	GDGCHC	1 cut(s)	464
MluCI	AATT	2 cut(s)	10, 434
MlyI	GAGTC	2 cut(s)	376, 401
MspA1I	CMGCKG	1 cut(s)	68
MwoI	GCNNNNNNNGC	3 cut(s)	21, 30, 141
NcoI	CCATGG	2 cut(s)	270, 495
NlaIII	CATG	3 cut(s)	122, 274, 499
NmeAIII	GCCGAG	1 cut(s)	170
PfeI	GAWTC	3 cut(s)	423, 454, 477
PflMI	CCANNNNNTGG	1 cut(s)	271
PkrI	GCNGC	5 cut(s)	17, 243, 246, 416, 419
PleI	GAGTC	2 cut(s)	376, 400
PpsI	GAGTC	2 cut(s)	376, 400
PspPI	GGNCC	1 cut(s)	492
PstI	CTGCAG	1 cut(s)	422
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	3 cut(s)	171, 287, 504
RsaNI	GTAC	3 cut(s)	170, 286, 503
SatI	GCNGC	5 cut(s)	16, 242, 245, 415, 418
Sau96I	GGNCC	1 cut(s)	492
SchI	GAGTC	2 cut(s)	376, 401
SduI	GDGCHC	1 cut(s)	464
SetI	ASST	9 cut(s)	70, 175, 249, 304, 308, 325, 341, 346, 518
SfcI	CTRYAG	1 cut(s)	418
SmlI	CTYRAG	2 cut(s)	281, 377
SmoI	CTYRAG	2 cut(s)	281, 377
Sse9I	AATT	2 cut(s)	10, 434
SsiI	CCGC	1 cut(s)	15
StyI	CCWWGG	2 cut(s)	270, 495
TaaI	ACNGT	1 cut(s)	95
TasI	AATT	2 cut(s)	10, 434
TauI	GCSGC	1 cut(s)	18
TfiI	GAWTC	3 cut(s)	423, 454, 477
TscAI	CASTG	1 cut(s)	137
TseI	GCWGC	4 cut(s)	241, 244, 414, 417
TspDTI	ATGAA	1 cut(s)	333
TspRI	CASTG	1 cut(s)	137
Van91I	CCANNNNNTGG	1 cut(s)	271
VneI	GTGCAC	1 cut(s)	460
XapI	RAATTY	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.