Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008189

Physical Location & Seq

Genomic Coordinates Forward (+)

12886412 .. 12888101

Gene Structure 1690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0141000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGATACAAGACTCCTTTGCTCTGTGTATTGGTGGTCTTCTCAGTGTTGTGGCTCAGGAAGTTCGCCTAACAGTAAGGTCAGCATCACCTGGGGTGAAGATTTTAGCAATACCATCAGGGAGACATGTGAATGAGATTTCTGATGAGGGTCAGCAAGGTGTTGTTCATCTTGGAAATATGTACGCTGAAGAGGAGAAACAATTTCTGGTGTACCTCTTAGTTCCACAATCCTCAACTCCACATAATAAGACGTCATTATTAGAGGTGTTATGCACGTACAAAGATCTAGCTTCAAATGAGCTGATGCAAGTGCAATGTGAGAAAGTAGAGATACTGAGACCTGAGGTTTGTTCCCCTGCTGAAAAGGCAGTGTCTTTGGAGGTTGATCGGCAGCGGAACAGAGTTTTGGTGGCTGAATCCATTGCAGAGGCACAAAGGTTGGCTGAGATGGGAAATCTGCAGGGTGCACAGGCTCTTTTGGCTCAACGAAAGGCAATTATATTAGCATCACCAGCGGCCCAAGCCGGAGATTTTCACAGAATGAGTTCCCACATGTCGCAAAGGCCCACAACTAGAGGTAACAGAAGAGCCTCCTGTCTCTCTGCTGCTTCCATGAGGGGTGTCCATTCCTCTGTTGGTCATGATGCCTCCGGGGCCAGTGCTTCATCAGTTGACGCTCCAGGTGATTCTTCTGCCCCAGTTGGTGCTTTTGAAACACCTGCTATGGTCAGAATGGTACTAAAATCACAGAAGAAGAATCAATCTGGTCCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

258

Amino Acids

27.59

Weight (kDa)

7.7

Isoelectric Point (pI)

55.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53050 AT1G53050
fragaria_vesca	FvH4_3g19930 FvH4_3g19930
malus_domestica	MD03G1227900.v1.1 MD11G1247100.v1.1
prunus_persica	Prupe.4G181100_v2.0.a1 Prupe.4G181100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0033611
rosa_laevigata	RLG00000033493
rosa_multiflora	Rmu_sc0001768.1_g000013 Rmu_sc0028977.1_g000003 Rmu_sc0029583.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046470
rosa_rugosa	Rorug05G0140900 Rorug05G0141000 Rorug05G0141100
rosa_samantha	Rh5AG232200 Rh5BG232900 Rh5CG261800 Rh5DG238500
rosa_wichuraiana	Rw5G021190 Rw5G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	727
AatII	GACGTC	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	727
AciI	CCGC	2 cut(s)	394, 515
AcuI	CTGAAG	1 cut(s)	207
AcyI	GRCGYC	1 cut(s)	251
AfaI	GTAC	4 cut(s)	182, 212, 278, 738
AflIII	ACRYGT	2 cut(s)	124, 552
AgsI	TTSAA	2 cut(s)	294, 713
AjnI	CCWGG	2 cut(s)	88, 679
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
AluBI	AGCT	2 cut(s)	290, 301
AluI	AGCT	2 cut(s)	290, 301
Alw21I	GWGCWC	1 cut(s)	469
Alw26I	GTCTC	3 cut(s)	115, 331, 602
Alw44I	GTGCAC	1 cut(s)	465
AoxI	GGCC	3 cut(s)	516, 563, 654
ApaLI	GTGCAC	1 cut(s)	465
ApeKI	GCWGC	2 cut(s)	391, 605
ArsI	GACNNNNNNTTYG	2 cut(s)	330, 362
Asp700I	GAANNNNTTC	1 cut(s)	544
AspS9I	GGNCC	4 cut(s)	517, 564, 654, 767
AsuC2I	CCSGG	1 cut(s)	652
AsuHPI	GGTGA	4 cut(s)	78, 106, 501, 695
AvaII	GGWCC	1 cut(s)	767
AxyI	CCTNAGG	1 cut(s)	342
BaeGI	GKGCMC	1 cut(s)	469
BbsI	GAAGAC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	2 cut(s)	403, 592
BccI	CCATC	2 cut(s)	121, 442
BciT130I	CCWGG	2 cut(s)	90, 681
BcnI	CCSGG	1 cut(s)	652
BcoDI	GTCTC	3 cut(s)	115, 331, 602
BfaI	CTAG	2 cut(s)	287, 573
BfmI	CTRYAG	1 cut(s)	458
BfuAI	ACCTGC	1 cut(s)	727
BglI	GCCNNNNNGGC	1 cut(s)	653
BglII	AGATCT	1 cut(s)	283
BisI	GCNGC	3 cut(s)	392, 516, 606
BlsI	GCNGC	3 cut(s)	393, 517, 607
Bme1390I	CCNGG	3 cut(s)	90, 652, 681
Bme18I	GGWCC	1 cut(s)	767
BmgT120I	GGNCC	4 cut(s)	517, 564, 654, 767
BmiI	GGNNCC	1 cut(s)	655
BmrFI	CCNGG	3 cut(s)	90, 652, 681
BmrI	ACTGGG	1 cut(s)	692
BmsI	GCATC	4 cut(s)	92, 294, 515, 634
BmuI	ACTGGG	1 cut(s)	692
BpiI	GAAGAC	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	663
Bpu10I	CCTNAGC	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	652
BsaAI	YACGTR	1 cut(s)	276
BsaHI	GRCGYC	1 cut(s)	251
BsaI	GGTCTC	1 cut(s)	331
BsaJI	CCNNGG	2 cut(s)	89, 651
Bse1I	ACTGG	2 cut(s)	657, 698
Bse21I	CCTNAGG	1 cut(s)	342
Bse3DI	GCAATG	2 cut(s)	320, 420
BseBI	CCWGG	2 cut(s)	90, 681
BseDI	CCNNGG	2 cut(s)	89, 651
BseMI	GCAATG	2 cut(s)	320, 420
BseMII	CTCAG	5 cut(s)	55, 68, 326, 333, 435
BseNI	ACTGG	2 cut(s)	657, 698
BseRI	GAGGAG	1 cut(s)	206
BseSI	GKGCMC	1 cut(s)	469
BseXI	GCAGC	2 cut(s)	403, 592
BshFI	GGCC	3 cut(s)	518, 565, 656
BsiHKAI	GWGCWC	1 cut(s)	469
BsiSI	CCGG	2 cut(s)	525, 651
BsmAI	GTCTC	3 cut(s)	115, 331, 602
BsnI	GGCC	3 cut(s)	518, 565, 656
Bso31I	GGTCTC	1 cut(s)	331
Bsp1286I	GDGCHC	1 cut(s)	469
Bsp143I	GATC	2 cut(s)	283, 385
BspACI	CCGC	2 cut(s)	394, 515
BspANI	GGCC	3 cut(s)	518, 565, 656
BspCNI	CTCAG	5 cut(s)	54, 67, 327, 334, 436
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	1 cut(s)	655
BspMAI	CTGCAG	1 cut(s)	462
BspMI	ACCTGC	1 cut(s)	727
BspQI	GCTCTTC	1 cut(s)	580
BspTNI	GGTCTC	1 cut(s)	331
BsrDI	GCAATG	2 cut(s)	320, 420
BsrI	ACTGG	2 cut(s)	657, 698
BssECI	CCNNGG	2 cut(s)	89, 651
BssMI	GATC	2 cut(s)	283, 385
BssNI	GRCGYC	1 cut(s)	251
Bst2UI	CCWGG	2 cut(s)	90, 681
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	2 cut(s)	183, 580
BstACI	GRCGYC	1 cut(s)	251
BstBAI	YACGTR	1 cut(s)	276
BstDEI	CTNAG	6 cut(s)	41, 54, 217, 335, 342, 444
BstKTI	GATC	2 cut(s)	286, 388
BstMAI	GTCTC	3 cut(s)	115, 331, 602
BstMBI	GATC	2 cut(s)	283, 385
BstMWI	GCNNNNNNNGC	5 cut(s)	365, 479, 512, 521, 653
BstNI	CCWGG	2 cut(s)	90, 681
BstNSI	RCATGY	2 cut(s)	128, 556
BstSCI	CCNGG	3 cut(s)	88, 650, 679
BstSFI	CTRYAG	1 cut(s)	458
BstSLI	GKGCMC	1 cut(s)	469
BstV1I	GCAGC	2 cut(s)	403, 592
BstV2I	GAAGAC	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
Bsu36I	CCTNAGG	1 cut(s)	342
BsuRI	GGCC	3 cut(s)	518, 565, 656
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	3 cut(s)	49, 375, 664
BveI	ACCTGC	1 cut(s)	727
CciI	TCATGA	1 cut(s)	640
Cfr13I	GGNCC	4 cut(s)	517, 564, 654, 767
CseI	GACGC	1 cut(s)	683
Csp6I	GTAC	4 cut(s)	181, 211, 277, 737
CviAII	CATG	4 cut(s)	125, 553, 613, 641
CviQI	GTAC	4 cut(s)	181, 211, 277, 737
DdeI	CTNAG	6 cut(s)	41, 54, 217, 335, 342, 444
DpnI	GATC	2 cut(s)	285, 387
DpnII	GATC	2 cut(s)	283, 385
Eam1104I	CTCTTC	2 cut(s)	183, 580
EarI	CTCTTC	2 cut(s)	183, 580
Eco31I	GGTCTC	1 cut(s)	331
Eco47I	GGWCC	1 cut(s)	767
Eco57I	CTGAAG	1 cut(s)	207
Eco81I	CCTNAGG	1 cut(s)	342
EcoRII	CCWGG	2 cut(s)	88, 679
FaeI	CATG	4 cut(s)	128, 556, 616, 644
FaiI	YATR	9 cut(s)	126, 179, 243, 271, 500, 554, 614, 642, 725
FatI	CATG	4 cut(s)	124, 552, 612, 640
Fnu4HI	GCNGC	3 cut(s)	392, 516, 606
Fsp4HI	GCNGC	3 cut(s)	392, 516, 606
FspBI	CTAG	2 cut(s)	287, 573
GluI	GCNGC	3 cut(s)	392, 516, 606
GsuI	CTGGAG	1 cut(s)	663
HaeIII	GGCC	3 cut(s)	518, 565, 656
HapII	CCGG	2 cut(s)	525, 651
HgaI	GACGC	1 cut(s)	683
Hin1I	GRCGYC	1 cut(s)	251
Hin1II	CATG	4 cut(s)	128, 556, 616, 644
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HinfI	GANTC	4 cut(s)	11, 416, 686, 757
HpaII	CCGG	2 cut(s)	525, 651
HphI	GGTGA	4 cut(s)	78, 106, 501, 695
Hpy166II	GTNNAC	3 cut(s)	211, 467, 673
Hpy188I	TCNGA	2 cut(s)	142, 731
Hpy188III	TCNNGA	2 cut(s)	56, 641
Hpy8I	GTNNAC	3 cut(s)	211, 467, 673
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	2 cut(s)	251, 275
HpyCH4V	TGCA	6 cut(s)	273, 307, 313, 425, 460, 467
HpyF10VI	GCNNNNNNNGC	5 cut(s)	365, 479, 512, 521, 653
HpyF3I	CTNAG	6 cut(s)	41, 54, 217, 335, 342, 444
HpySE526I	ACGT	2 cut(s)	251, 275
Hsp92I	GRCGYC	1 cut(s)	251
Hsp92II	CATG	4 cut(s)	128, 556, 616, 644
Kzo9I	GATC	2 cut(s)	283, 385
LguI	GCTCTTC	1 cut(s)	580
LmnI	GCTCC	1 cut(s)	682
Lsp1109I	GCAGC	2 cut(s)	403, 592
LweI	GCATC	4 cut(s)	92, 294, 515, 634
MaeI	CTAG	2 cut(s)	287, 573
MaeII	ACGT	2 cut(s)	251, 275
MaeIII	GTNAC	1 cut(s)	578
MalI	GATC	2 cut(s)	285, 387
MboI	GATC	2 cut(s)	283, 385
MboII	GAAGA	7 cut(s)	29, 109, 200, 597, 681, 763, 766
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	1 cut(s)	469
MluCI	AATT	2 cut(s)	200, 495
MlyI	GAGTC	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	544
MslI	CAYNNNNRTG	1 cut(s)	129
MspA1I	CMGCKG	2 cut(s)	394, 515
MspI	CCGG	2 cut(s)	525, 651
MspR9I	CCNGG	3 cut(s)	90, 652, 681
MvaI	CCWGG	2 cut(s)	90, 681
MwoI	GCNNNNNNNGC	5 cut(s)	365, 479, 512, 521, 653
NciI	CCSGG	1 cut(s)	652
NdeII	GATC	2 cut(s)	283, 385
NlaIII	CATG	4 cut(s)	128, 556, 616, 644
NlaIV	GGNNCC	1 cut(s)	655
NspI	RCATGY	2 cut(s)	128, 556
PagI	TCATGA	1 cut(s)	640
PaqCI	CACCTGC	1 cut(s)	727
PciI	ACATGT	2 cut(s)	124, 552
PciSI	GCTCTTC	1 cut(s)	580
PdmI	GAANNNNTTC	1 cut(s)	544
PfeI	GAWTC	3 cut(s)	416, 686, 757
PkrI	GCNGC	3 cut(s)	393, 517, 607
PleI	GAGTC	1 cut(s)	5
PpsI	GAGTC	1 cut(s)	5
Ppu21I	YACGTR	1 cut(s)	276
PscI	ACATGT	2 cut(s)	124, 552
Psp6I	CCWGG	2 cut(s)	88, 679
PspGI	CCWGG	2 cut(s)	88, 679
PspN4I	GGNNCC	1 cut(s)	655
PspPI	GGNCC	4 cut(s)	517, 564, 654, 767
PstI	CTGCAG	1 cut(s)	462
PsuI	RGATCY	1 cut(s)	283
RsaI	GTAC	4 cut(s)	182, 212, 278, 738
RsaNI	GTAC	4 cut(s)	181, 211, 277, 737
RseI	CAYNNNNRTG	1 cut(s)	129
SapI	GCTCTTC	1 cut(s)	580
SatI	GCNGC	3 cut(s)	392, 516, 606
Sau3AI	GATC	2 cut(s)	283, 385
Sau96I	GGNCC	4 cut(s)	517, 564, 654, 767
SchI	GAGTC	1 cut(s)	5
ScrFI	CCNGG	3 cut(s)	90, 652, 681
SduI	GDGCHC	1 cut(s)	469
SfaNI	GCATC	4 cut(s)	92, 294, 515, 634
SfcI	CTRYAG	1 cut(s)	458
SinI	GGWCC	1 cut(s)	767
SmiMI	CAYNNNNRTG	1 cut(s)	129
Sse9I	AATT	2 cut(s)	200, 495
SsiI	CCGC	2 cut(s)	394, 515
SspMI	CTAG	2 cut(s)	287, 573
StyD4I	CCNGG	3 cut(s)	88, 650, 679
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	2 cut(s)	254, 278
TasI	AATT	2 cut(s)	200, 495
TauI	GCSGC	1 cut(s)	518
TfiI	GAWTC	3 cut(s)	416, 686, 757
TscAI	CASTG	3 cut(s)	49, 375, 664
TseI	GCWGC	2 cut(s)	391, 605
TspDTI	ATGAA	2 cut(s)	155, 654
TspRI	CASTG	3 cut(s)	49, 375, 664
VneI	GTGCAC	1 cut(s)	465
VpaK11BI	GGWCC	1 cut(s)	767
XceI	RCATGY	2 cut(s)	128, 556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	632
XmnI	GAANNNNTTC	1 cut(s)	544
XspI	CTAG	2 cut(s)	287, 573
ZraI	GACGTC	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.