Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029583.1

Orthogroup ID

OG0008189

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 5972

Gene Structure 5972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029583.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

atgggttgcatgtattgcaagccctctgcaattgaggatagcaaggagagccctagagagcgattgtccaacaaggcagcatcagactcgcgggcggcgagggtggcttcctcaaggagagaggaagcttatcgtgcaaaagatcgaaatgatagcaatgacgggagagcaatgttgattgataagcactcaaatggggccgctcgatcacatggtgacaattatcagaggaagagggagaaaatggagtatgttgctcctctacatcccgggatgggcagcattccgaaagctgcagaaggagaacaggtcgcagcagggtggccatcctggctagctggagtggctggagaggccattaaggggtggataccacgtcgtgcagattcatttgagaagctagacaaaattggtcagggaacatatagcaacgtctatagggctcgtgatcttgatcaaaagaaaattgtagcgttgaagaaagtgaggtttgataactcagagcccgagagtgttcgctttatggcaagggaaattctcatcttacggaggcttgatcatcaaaatgtgataaaactagaaggtctagttacgtcaaggatgtcttgcagcttgtaccttgtttttgagtacatggagcatgatttggcggggcttgctttacaccctggcctgaaatttacagaagcacaggttaaatgttacatgcagcaactattatgtgggcttgatcactgtcacagtcgtggggttctgcatcgtgacattaaaggttccaaccttttaattgacaacagtggcatgttgaaaattgctgactttggtctggcgagtatttttgatccccatcaaaatcagcctctaactagccgtgttgtaactctttggtaccgaccgcctgagcttttacttggtgctacttactatgggactgccgttgatctgtggagtacaggttgcatactcgctgaactctatgctggcaaaccgattatgccgggaagaaccgaggtggagcagttgcataagattttcaagctttgcggctcaccttctgaggattattggagaaaatcaaagttgcctcatgcaaccatatttaagcctcaacagccttatagacgctgtgtggcagaaacttttaaggatttccctgtaccagctctagcacttatggacacccttctttccatagaccctgcggatcggggatctgcatcttctgctctcaagagtgagttctttactacaaaacctctgccttgtgatccgtcaagtttgccaaaatatcctcccagcaaagagtttgatgttaaagtacgggatgaggaagctagaagacaaggagcagcaggcaagggccaaaggcctgaccctgaaaggagaggaacaagagattctcgagccatgccagcacctgatgccaatgctgaattagttatgtcaatgcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

484

Amino Acids

54.17

Weight (kDa)

9.03

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53050 AT1G53050
fragaria_vesca	FvH4_3g19930 FvH4_3g19930
malus_domestica	MD03G1227900.v1.1 MD11G1247100.v1.1
prunus_persica	Prupe.4G181100_v2.0.a1 Prupe.4G181100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0033611
rosa_laevigata	RLG00000033493
rosa_multiflora	Rmu_sc0001768.1_g000013 Rmu_sc0028977.1_g000003 Rmu_sc0029583.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046470
rosa_rugosa	Rorug05G0140900 Rorug05G0141000 Rorug05G0141100
rosa_samantha	Rh5AG232200 Rh5BG232900 Rh5CG261800 Rh5DG238500
rosa_wichuraiana	Rw5G021190 Rw5G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	888
AccB1I	GGYRCC	1 cut(s)	888
AccBSI	CCGCTC	1 cut(s)	203
AccII	CGCG	1 cut(s)	91
AciI	CCGC	7 cut(s)	91, 95, 201, 650, 896, 1044, 1202
AclWI	GGATC	4 cut(s)	836, 1212, 1219, 1262
AcoI	YGGCCR	1 cut(s)	323
AcsI	RAATTY	2 cut(s)	534, 677
AdeI	CACNNNGTG	2 cut(s)	215, 380
AfaI	GTAC	6 cut(s)	617, 632, 890, 952, 1158, 1320
AfiI	CCNNNNNNNGG	2 cut(s)	275, 363
AgsI	TTSAA	3 cut(s)	478, 808, 1036
AjiI	CACGTC	1 cut(s)	377
AjnI	CCWGG	2 cut(s)	329, 667
AleI	CACNNNNGTG	1 cut(s)	744
AluBI	AGCT	9 cut(s)	128, 293, 338, 400, 612, 904, 1039, 1163, 1334
AluI	AGCT	9 cut(s)	128, 293, 338, 400, 612, 904, 1039, 1163, 1334
AlwI	GGATC	4 cut(s)	836, 1212, 1219, 1262
AlwNI	CAGNNNCTG	1 cut(s)	1418
Ama87I	CYCGRG	3 cut(s)	269, 506, 1401
AoxI	GGCC	6 cut(s)	198, 323, 354, 670, 1360, 1367
ApeKI	GCWGC	7 cut(s)	77, 279, 293, 314, 609, 709, 1349
ApoI	RAATTY	2 cut(s)	534, 677
Asp718I	GGTACC	1 cut(s)	888
AspS9I	GGNCC	2 cut(s)	198, 1360
AsuC2I	CCSGG	3 cut(s)	270, 271, 999
AsuHPI	GGTGA	2 cut(s)	227, 1041
AsuNHI	GCTAGC	1 cut(s)	334
AvaI	CYCGRG	3 cut(s)	269, 506, 1401
BalI	TGGCCA	1 cut(s)	325
BanI	GGYRCC	1 cut(s)	888
BanII	GRGCYC	3 cut(s)	53, 445, 507
BauI	CACGAG	1 cut(s)	444
BbsI	GAAGAC	1 cut(s)	1345
BbvI	GCAGC	7 cut(s)	89, 280, 291, 326, 621, 721, 1361
BccI	CCATC	3 cut(s)	268, 334, 855
BceAI	ACGGC	2 cut(s)	855, 920
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BciT130I	CCWGG	2 cut(s)	331, 669
BciVI	GTATCC	1 cut(s)	363
BclI	TGATCA	3 cut(s)	454, 556, 730
BcnI	CCSGG	3 cut(s)	270, 271, 999
BfaI	CTAG	8 cut(s)	54, 335, 401, 578, 587, 867, 1166, 1335
BfmI	CTRYAG	2 cut(s)	294, 436
BfuI	GTATCC	1 cut(s)	363
BglI	GCCNNNNNGGC	1 cut(s)	331
Bme1390I	CCNGG	5 cut(s)	270, 271, 331, 669, 999
BmeT110I	CYCGRG	3 cut(s)	269, 506, 1401
BmgBI	CACGTC	1 cut(s)	377
BmgT120I	GGNCC	2 cut(s)	198, 1360
BmiI	GGNNCC	3 cut(s)	199, 775, 890
BmrFI	CCNGG	5 cut(s)	270, 271, 331, 669, 999
BmsI	GCATC	4 cut(s)	89, 766, 1226, 1411
BmtI	GCTAGC	1 cut(s)	338
BoxI	GACNNNNGTC	1 cut(s)	822
BpiI	GAAGAC	1 cut(s)	1345
BpmI	CTGGAG	2 cut(s)	360, 369
Bpu10I	CCTNAGC	1 cut(s)	900
BpuEI	CTTGAG	2 cut(s)	97, 1214
BpuMI	CCSGG	3 cut(s)	270, 271, 999
BsaBI	GATNNNNATC	3 cut(s)	453, 846, 1216
BsaJI	CCNNGG	3 cut(s)	269, 667, 1008
BsaXI	ACNNNNNCTCC	4 cut(s)	294, 324, 940, 970
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 363
Bse3DI	GCAATG	2 cut(s)	163, 177
Bse8I	GATNNNNATC	3 cut(s)	453, 846, 1216
BseBI	CCWGG	2 cut(s)	331, 669
BseDI	CCNNGG	3 cut(s)	269, 667, 1008
BseGI	GGATG	5 cut(s)	265, 279, 326, 606, 1330
BseJI	GATNNNNATC	3 cut(s)	453, 846, 1216
BseLI	CCNNNNNNNGG	2 cut(s)	275, 363
BseMI	GCAATG	2 cut(s)	163, 177
BseMII	CTCAG	3 cut(s)	513, 891, 1047
BseRI	GAGGAG	1 cut(s)	249
BseXI	GCAGC	7 cut(s)	89, 280, 291, 326, 621, 721, 1361
BseYI	CCCAGC	1 cut(s)	1295
BsgI	GTGCAG	1 cut(s)	402
Bsh1236I	CGCG	1 cut(s)	91
Bsh1285I	CGRYCG	1 cut(s)	896
BshFI	GGCC	6 cut(s)	200, 325, 356, 672, 1362, 1369
BshNI	GGYRCC	1 cut(s)	888
BsiEI	CGRYCG	1 cut(s)	896
BsiHKCI	CYCGRG	3 cut(s)	269, 506, 1401
BsiSI	CCGG	2 cut(s)	270, 998
BslFI	GGGAC	1 cut(s)	943
BslI	CCNNNNNNNGG	2 cut(s)	275, 363
BsmFI	GGGAC	1 cut(s)	943
BsmI	GAATGC	1 cut(s)	282
BsnI	GGCC	6 cut(s)	200, 325, 356, 672, 1362, 1369
BsoBI	CYCGRG	3 cut(s)	269, 506, 1401
Bsp1286I	GDGCHC	3 cut(s)	53, 445, 507
BspACI	CCGC	7 cut(s)	91, 95, 201, 650, 896, 1044, 1202
BspANI	GGCC	6 cut(s)	200, 325, 356, 672, 1362, 1369
BspCNI	CTCAG	3 cut(s)	512, 892, 1048
BspFNI	CGCG	1 cut(s)	91
BspLI	GGNNCC	3 cut(s)	199, 775, 890
BspMAI	CTGCAG	1 cut(s)	298
BspOI	GCTAGC	1 cut(s)	338
BspPI	GGATC	4 cut(s)	836, 1212, 1219, 1262
BspT107I	GGYRCC	1 cut(s)	888
BsrBI	CCGCTC	1 cut(s)	203
BsrDI	GCAATG	2 cut(s)	163, 177
BssECI	CCNNGG	3 cut(s)	269, 667, 1008
BssSI	CACGAG	1 cut(s)	444
Bst2BI	CACGAG	1 cut(s)	444
Bst2UI	CCWGG	2 cut(s)	331, 669
Bst4CI	ACNGT	3 cut(s)	737, 743, 797
Bst6I	CTCTTC	1 cut(s)	227
BstAPI	GCANNNNNTGC	3 cut(s)	15, 1223, 1421
BstC8I	GCNNGC	7 cut(s)	20, 93, 336, 657, 982, 1354, 1413
BstDEI	CTNAG	3 cut(s)	499, 900, 1056
BstF5I	GGATG	5 cut(s)	265, 279, 326, 606, 1330
BstFNI	CGCG	1 cut(s)	91
BstMCI	CGRYCG	1 cut(s)	896
BstNI	CCWGG	2 cut(s)	331, 669
BstNSI	RCATGY	3 cut(s)	13, 709, 805
BstPAI	GACNNNNGTC	1 cut(s)	822
BstSCI	CCNGG	5 cut(s)	268, 269, 329, 667, 997
BstSFI	CTRYAG	2 cut(s)	294, 436
BstUI	CGCG	1 cut(s)	91
BstV1I	GCAGC	7 cut(s)	89, 280, 291, 326, 621, 721, 1361
BstV2I	GAAGAC	1 cut(s)	1345
BstX2I	RGATCY	1 cut(s)	1211
BstYI	RGATCY	1 cut(s)	1211
BsuI	GTATCC	1 cut(s)	363
BsuRI	GGCC	6 cut(s)	200, 325, 356, 672, 1362, 1369
BtrI	CACGTC	1 cut(s)	377
BtsCI	GGATG	5 cut(s)	265, 279, 326, 606, 1330
BtsIMutI	CAGTG	2 cut(s)	733, 802
Cac8I	GCNNGC	7 cut(s)	20, 93, 336, 657, 982, 1354, 1413
CaiI	CAGNNNCTG	1 cut(s)	1418
Cfr13I	GGNCC	2 cut(s)	198, 1360
Cfr9I	CCCGGG	1 cut(s)	269
CseI	GACGC	1 cut(s)	1131
Csp6I	GTAC	6 cut(s)	616, 631, 889, 951, 1157, 1319
CviAII	CATG	8 cut(s)	10, 212, 634, 641, 706, 802, 1088, 1408
CviQI	GTAC	6 cut(s)	616, 631, 889, 951, 1157, 1319
DdeI	CTNAG	3 cut(s)	499, 900, 1056
DraIII	CACNNNGTG	2 cut(s)	215, 380
EaeI	YGGCCR	1 cut(s)	323
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Eco147I	AGGCCT	1 cut(s)	1369
Eco24I	GRGCYC	3 cut(s)	53, 445, 507
Eco88I	CYCGRG	3 cut(s)	269, 506, 1401
EcoRII	CCWGG	2 cut(s)	329, 667
EcoT38I	GRGCYC	3 cut(s)	53, 445, 507
FaeI	CATG	8 cut(s)	13, 215, 637, 644, 709, 805, 1091, 1411
FalI	AAGNNNNNCTT	2 cut(s)	589, 621
FaqI	GGGAC	1 cut(s)	943
FatI	CATG	8 cut(s)	9, 211, 633, 640, 705, 801, 1087, 1407
FauI	CCCGC	2 cut(s)	84, 643
FbaI	TGATCA	3 cut(s)	454, 556, 730
FokI	GGATG	5 cut(s)	252, 286, 313, 613, 1337
FriOI	GRGCYC	3 cut(s)	53, 445, 507
FspBI	CTAG	8 cut(s)	54, 335, 401, 578, 587, 867, 1166, 1335
GsaI	CCCAGC	1 cut(s)	1299
GsuI	CTGGAG	2 cut(s)	360, 369
HaeIII	GGCC	6 cut(s)	200, 325, 356, 672, 1362, 1369
HapII	CCGG	2 cut(s)	270, 998
HgaI	GACGC	1 cut(s)	1131
Hin1II	CATG	8 cut(s)	13, 215, 637, 644, 709, 805, 1091, 1411
HindIII	AAGCTT	2 cut(s)	126, 1037
HinfI	GANTC	3 cut(s)	86, 386, 1397
HpaII	CCGG	2 cut(s)	270, 998
HphI	GGTGA	2 cut(s)	227, 1041
Hpy188I	TCNGA	5 cut(s)	85, 228, 288, 502, 1057
Hpy188III	TCNNGA	5 cut(s)	446, 452, 761, 1231, 1401
Hpy99I	CGWCG	1 cut(s)	381
HpyAV	CCTTC	4 cut(s)	293, 575, 1062, 1193
HpyCH4III	ACNGT	3 cut(s)	737, 743, 797
HpyCH4IV	ACGT	3 cut(s)	376, 432, 593
HpyF3I	CTNAG	3 cut(s)	499, 900, 1056
HpySE526I	ACGT	3 cut(s)	376, 432, 593
Hsp92II	CATG	8 cut(s)	13, 215, 637, 644, 709, 805, 1091, 1411
KpnI	GGTACC	1 cut(s)	892
Ksp22I	TGATCA	3 cut(s)	454, 556, 730
LmnI	GCTCC	4 cut(s)	262, 637, 1015, 1346
Lsp1109I	GCAGC	7 cut(s)	89, 280, 291, 326, 621, 721, 1361
LweI	GCATC	4 cut(s)	89, 766, 1226, 1411
MaeI	CTAG	8 cut(s)	54, 335, 401, 578, 587, 867, 1166, 1335
MaeII	ACGT	3 cut(s)	376, 432, 593
MaeIII	GTNAC	6 cut(s)	215, 589, 701, 737, 761, 877
MbiI	CCGCTC	1 cut(s)	203
MboII	GAAGA	5 cut(s)	244, 490, 1014, 1212, 1350
MfeI	CAATTG	1 cut(s)	30
MflI	RGATCY	1 cut(s)	1211
MhlI	GDGCHC	3 cut(s)	53, 445, 507
MlsI	TGGCCA	1 cut(s)	325
MluCI	AATT	9 cut(s)	30, 220, 408, 465, 534, 677, 786, 810, 1433
MluNI	TGGCCA	1 cut(s)	325
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	2 cut(s)	93, 801
Mox20I	TGGCCA	1 cut(s)	325
MscI	TGGCCA	1 cut(s)	325
MseI	TTAA	7 cut(s)	360, 696, 768, 785, 1101, 1143, 1314
MslI	CAYNNNNRTG	3 cut(s)	192, 564, 744
Msp20I	TGGCCA	1 cut(s)	325
MspI	CCGG	2 cut(s)	270, 998
MspR9I	CCNGG	5 cut(s)	270, 271, 331, 669, 999
MunI	CAATTG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	282
MvaI	CCWGG	2 cut(s)	331, 669
MvnI	CGCG	1 cut(s)	91
NciI	CCSGG	3 cut(s)	270, 271, 999
NheI	GCTAGC	1 cut(s)	334
NlaIII	CATG	8 cut(s)	13, 215, 637, 644, 709, 805, 1091, 1411
NlaIV	GGNNCC	3 cut(s)	199, 775, 890
NmuCI	GTSAC	3 cut(s)	215, 737, 761
NspI	RCATGY	3 cut(s)	13, 709, 805
OliI	CACNNNNGTG	1 cut(s)	744
PaeR7I	CTCGAG	1 cut(s)	1401
PceI	AGGCCT	1 cut(s)	1369
PcsI	WCGNNNNNNNCGW	1 cut(s)	95
PctI	GAATGC	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	386, 1397
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
PshAI	GACNNNNGTC	1 cut(s)	822
Psp6I	CCWGG	2 cut(s)	329, 667
PspFI	CCCAGC	1 cut(s)	1295
PspGI	CCWGG	2 cut(s)	329, 667
PspN4I	GGNNCC	3 cut(s)	199, 775, 890
PspPI	GGNCC	2 cut(s)	198, 1360
PstI	CTGCAG	1 cut(s)	298
PstNI	CAGNNNCTG	1 cut(s)	1418
PsuI	RGATCY	1 cut(s)	1211
RsaI	GTAC	6 cut(s)	617, 632, 890, 952, 1158, 1320
RsaNI	GTAC	6 cut(s)	616, 631, 889, 951, 1157, 1319
RseI	CAYNNNNRTG	3 cut(s)	192, 564, 744
SaqAI	TTAA	7 cut(s)	360, 696, 768, 785, 1101, 1143, 1314
Sau96I	GGNCC	2 cut(s)	198, 1360
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	5 cut(s)	270, 271, 331, 669, 999
SduI	GDGCHC	3 cut(s)	53, 445, 507
SfaNI	GCATC	4 cut(s)	89, 766, 1226, 1411
SfcI	CTRYAG	2 cut(s)	294, 436
Sfr274I	CTCGAG	1 cut(s)	1401
SlaI	CTCGAG	1 cut(s)	1401
SmaI	CCCGGG	1 cut(s)	271
SmiMI	CAYNNNNRTG	3 cut(s)	192, 564, 744
SmlI	CTYRAG	3 cut(s)	112, 1229, 1401
SmoI	CTYRAG	3 cut(s)	112, 1229, 1401
Sse9I	AATT	9 cut(s)	30, 220, 408, 465, 534, 677, 786, 810, 1433
SseBI	AGGCCT	1 cut(s)	1369
SsiI	CCGC	7 cut(s)	91, 95, 201, 650, 896, 1044, 1202
SspMI	CTAG	8 cut(s)	54, 335, 401, 578, 587, 867, 1166, 1335
StuI	AGGCCT	1 cut(s)	1369
StyD4I	CCNGG	5 cut(s)	268, 269, 329, 667, 997
TaaI	ACNGT	3 cut(s)	737, 743, 797
TaiI	ACGT	3 cut(s)	379, 435, 596
TaqI	TCGA	3 cut(s)	145, 205, 1402
TasI	AATT	9 cut(s)	30, 220, 408, 465, 534, 677, 786, 810, 1433
TatI	WGTACW	2 cut(s)	630, 950
TauI	GCSGC	3 cut(s)	98, 203, 1047
TfiI	GAWTC	2 cut(s)	386, 1397
Tru1I	TTAA	7 cut(s)	360, 696, 768, 785, 1101, 1143, 1314
Tru9I	TTAA	7 cut(s)	360, 696, 768, 785, 1101, 1143, 1314
TscAI	CASTG	2 cut(s)	740, 802
TseFI	GTSAC	3 cut(s)	215, 737, 761
TseI	GCWGC	7 cut(s)	77, 279, 293, 314, 609, 709, 1349
Tsp45I	GTSAC	3 cut(s)	215, 737, 761
TspDTI	ATGAA	1 cut(s)	378
TspGWI	ACGGA	2 cut(s)	562, 1260
TspMI	CCCGGG	1 cut(s)	269
TspRI	CASTG	2 cut(s)	740, 802
XapI	RAATTY	2 cut(s)	534, 677
XceI	RCATGY	3 cut(s)	13, 709, 805
XhoI	CTCGAG	1 cut(s)	1401
XmaI	CCCGGG	1 cut(s)	269
XspI	CTAG	8 cut(s)	54, 335, 401, 578, 587, 867, 1166, 1335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.