Rw5G021640

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
29394534 .. 29401093
6560 bp
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UTR
Exon/CDS
Intron
Rw5G021640.1

Sequence Viewer

Length: 1662 bp
ATGGGTTGCATGTATTGCAAGCCCTCTGCAATTGAGGATAGCAAGGAGAGCCCCAGGGAGCGATTGTCCAACAAGGCAGCATCAGACTCGCGGGCGGCGAGGGTGGCTTCCTCAAGGAGAGAGGAAGCTTATCGTGCAAAAGATCGAAATGATAGCAATGACGGGAGAGCAATGTTGATTGATAAGCACTCAAATGGGGCCGCTCGATCACATGGTGACAATTATCAGAGGAAGAGGGAGAAAATGGAGTATGTTGCTCCTCTACATCCCGGGATGGGCAGCATTCCGAAAGCTGCAGAAGGAGAACAGGTCGCAGCAGGGTGGCCATCCTGGCTAGCTGGAGTGGCTGGAGAGGCCATTAAGGGGTGGATACCACGTCGAGCAGATTCATTTGAGAAGCTAGACAAAATTGGTCAGGGAACATATAGCAACGTCTATAGGGCTCGTGATCTTGATCAAAAGAAAATTGTAGCGTTGAAGAAAGTGAGGTTTGATAACTCAGAGCCCGAGAGTGTTCGCTTTATGGCAAGGGAAATTCTCATCTTACGGAGGCTTGATCATCAAAATGTGATAAAACTAGAAGGTCTAGTTACGTCAAGGATGTCTTGCAGCTTGTACCTTGTTTTTGAGTACATGGAGCATGATTTGGCGGGGCTTGCTTTACACCCTGGCCTGAAATTTACAGAAGCACAGGTTAAATGTTACATGCAGCAACTATTATGTGGGCTTGATCACTGTCACAGTCGTGGGGTTCTGCATCGTGACATTAAAGGTTCCAACCTTTTAATTGACAACAGTGGCATGTTGAAAATTGCTGACTTTGGTCTGGCGAGTATTTTTGATCCCCATCAAAATCAGCCTCTAACTAGCCGTGTTGTAACTCTTTGGTACCGACCGCCTGAGCTTTTACTTGGTGCTACTTACTATGGGACTGCTGTTGATCTGTGGAGTACAGGTTGCATACTCGCTGAACTCTATGCTGGCAAACCGATTATGCCAGGAAGAACCGAGGTGGAGCAGTTGCATAAGATTTTCAAGCTTTGCGGCTCACCTTCTGAGGATTATTGGAGAAAATCAAAGTTGCCTCATGCAACCATATTTAAGCCTCAACAGCCTTATAGACGCTGTGTGGCAGAAACTTTTAAGGATTTCCCTGTACCAGCTCTAGCACTTATGGACACCCTTCTTTCCATAGACCCTGCGGATCGTGGATCTGCATCTTCTGCTCTCAAGAGTGAGTTCTTTACTACAAAACCTCTGCCTTGTGATCCGTCAAGTTTGCCAAAATATCCTCCCAGCAAAGAGTTTGATGTTAAAGTACGGGATGAGGAAGCTAGAAGACAAGGAGCAGCAGGCAAGGGCCAAAGGCCTGACCCTGAAAGGAGAGGAACAAGAGATTCTCGAGCCATGCCAGCACCTGATGCCAATGCTGAATTAGTCATGTCAATGCAGAAAAGACAAGATCAATCTAATTCTAAAAGCCGAAGTGAGAAGTTTAATCCTCATCCAGAAGAAGTTGCTTCTGGCTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGTCAAGTTTGGTTCTTTTTAGTTTTTAA

Protein Analysis

553

Amino Acids

58.08

Weight (kDa)

9.08

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 131 - 415 4.9e-66 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 134 - 344 8.1e-31 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 888
AccB1I GGYRCC 1 cut(s) 888
AccBSI CCGCTC 1 cut(s) 203
AccII CGCG 1 cut(s) 91
AciI CCGC 7 cut(s) 91, 95, 201, 650, 896, 1044, 1202
AclWI GGATC 4 cut(s) 836, 1212, 1219, 1262
AcoI YGGCCR 1 cut(s) 323
AcsI RAATTY 2 cut(s) 534, 677
AdeI CACNNNGTG 1 cut(s) 215
AfaI GTAC 6 cut(s) 617, 632, 890, 952, 1158, 1320
AfiI CCNNNNNNNGG 2 cut(s) 275, 363
AgsI TTSAA 3 cut(s) 478, 808, 1036
AjiI CACGTC 1 cut(s) 377
AjnI CCWGG 4 cut(s) 53, 329, 667, 997
AleI CACNNNNGTG 1 cut(s) 744
AluBI AGCT 9 cut(s) 128, 293, 338, 400, 612, 904, 1039, 1163, 1334
AluI AGCT 9 cut(s) 128, 293, 338, 400, 612, 904, 1039, 1163, 1334
AlwI GGATC 4 cut(s) 836, 1212, 1219, 1262
AlwNI CAGNNNCTG 1 cut(s) 1418
Ama87I CYCGRG 3 cut(s) 269, 506, 1401
AoxI GGCC 6 cut(s) 198, 323, 354, 670, 1360, 1367
ApeKI GCWGC 7 cut(s) 77, 279, 293, 314, 609, 709, 1349
ApoI RAATTY 2 cut(s) 534, 677
Asp718I GGTACC 1 cut(s) 888
AspS9I GGNCC 2 cut(s) 198, 1360
AsuC2I CCSGG 2 cut(s) 270, 271
AsuHPI GGTGA 2 cut(s) 227, 1041
AsuNHI GCTAGC 1 cut(s) 334
AvaI CYCGRG 3 cut(s) 269, 506, 1401
BalI TGGCCA 1 cut(s) 325
BanI GGYRCC 1 cut(s) 888
BanII GRGCYC 3 cut(s) 53, 445, 507
BauI CACGAG 1 cut(s) 444
BbsI GAAGAC 1 cut(s) 1345
BbvI GCAGC 7 cut(s) 89, 280, 291, 326, 621, 721, 1361
BccI CCATC 3 cut(s) 268, 334, 855
BceAI ACGGC 1 cut(s) 855
BcgI CGANNNNNNTGC 2 cut(s) 69, 103
BciT130I CCWGG 4 cut(s) 55, 331, 669, 999
BciVI GTATCC 1 cut(s) 363
BclI TGATCA 3 cut(s) 454, 556, 730
BcnI CCSGG 2 cut(s) 270, 271
BfaI CTAG 7 cut(s) 335, 401, 578, 587, 867, 1166, 1335
BfmI CTRYAG 2 cut(s) 294, 436
BfuI GTATCC 1 cut(s) 363
BglI GCCNNNNNGGC 1 cut(s) 331
Bme1390I CCNGG 6 cut(s) 55, 270, 271, 331, 669, 999
BmeT110I CYCGRG 3 cut(s) 269, 506, 1401
BmgBI CACGTC 1 cut(s) 377
BmgT120I GGNCC 2 cut(s) 198, 1360
BmiI GGNNCC 3 cut(s) 199, 775, 890
BmrFI CCNGG 6 cut(s) 55, 270, 271, 331, 669, 999
BmsI GCATC 4 cut(s) 89, 766, 1226, 1411
BmtI GCTAGC 1 cut(s) 338
BoxI GACNNNNGTC 1 cut(s) 822
BpiI GAAGAC 1 cut(s) 1345
BpmI CTGGAG 2 cut(s) 360, 369
Bpu10I CCTNAGC 1 cut(s) 900
BpuEI CTTGAG 2 cut(s) 97, 1214
BpuMI CCSGG 2 cut(s) 270, 271
BsaBI GATNNNNATC 3 cut(s) 453, 846, 1216
BsaJI CCNNGG 5 cut(s) 53, 54, 269, 667, 1008
BsaXI ACNNNNNCTCC 6 cut(s) 50, 80, 294, 324, 940, 970
Bsc4I CCNNNNNNNGG 2 cut(s) 275, 363
Bse3DI GCAATG 2 cut(s) 163, 177
Bse8I GATNNNNATC 3 cut(s) 453, 846, 1216
BseBI CCWGG 4 cut(s) 55, 331, 669, 999
BseDI CCNNGG 5 cut(s) 53, 54, 269, 667, 1008
BseGI GGATG 6 cut(s) 265, 279, 326, 606, 1330, 1504
BseJI GATNNNNATC 3 cut(s) 453, 846, 1216
BseLI CCNNNNNNNGG 2 cut(s) 275, 363
BseMI GCAATG 2 cut(s) 163, 177
BseMII CTCAG 3 cut(s) 513, 891, 1047
BseRI GAGGAG 1 cut(s) 249
BseXI GCAGC 7 cut(s) 89, 280, 291, 326, 621, 721, 1361
BseYI CCCAGC 1 cut(s) 1295
Bsh1236I CGCG 1 cut(s) 91
Bsh1285I CGRYCG 1 cut(s) 896
BshFI GGCC 6 cut(s) 200, 325, 356, 672, 1362, 1369
BshNI GGYRCC 1 cut(s) 888
BsiEI CGRYCG 1 cut(s) 896
BsiHKCI CYCGRG 3 cut(s) 269, 506, 1401
BsiSI CCGG 1 cut(s) 270
BslFI GGGAC 1 cut(s) 943
BslI CCNNNNNNNGG 2 cut(s) 275, 363
BsmFI GGGAC 1 cut(s) 943
BsmI GAATGC 1 cut(s) 282
BsnI GGCC 6 cut(s) 200, 325, 356, 672, 1362, 1369
BsoBI CYCGRG 3 cut(s) 269, 506, 1401
Bsp1286I GDGCHC 3 cut(s) 53, 445, 507
BspACI CCGC 7 cut(s) 91, 95, 201, 650, 896, 1044, 1202
BspANI GGCC 6 cut(s) 200, 325, 356, 672, 1362, 1369
BspCNI CTCAG 3 cut(s) 512, 892, 1048
BspFNI CGCG 1 cut(s) 91
BspLI GGNNCC 3 cut(s) 199, 775, 890
BspMAI CTGCAG 1 cut(s) 298
BspOI GCTAGC 1 cut(s) 338
BspPI GGATC 4 cut(s) 836, 1212, 1219, 1262
BspT107I GGYRCC 1 cut(s) 888
BsrBI CCGCTC 1 cut(s) 203
BsrDI GCAATG 2 cut(s) 163, 177
BssECI CCNNGG 5 cut(s) 53, 54, 269, 667, 1008
BssSI CACGAG 1 cut(s) 444
Bst2BI CACGAG 1 cut(s) 444
Bst2UI CCWGG 4 cut(s) 55, 331, 669, 999
Bst4CI ACNGT 3 cut(s) 737, 743, 797
Bst6I CTCTTC 1 cut(s) 227
BstAPI GCANNNNNTGC 3 cut(s) 15, 1223, 1421
BstC8I GCNNGC 7 cut(s) 20, 93, 336, 657, 982, 1354, 1413
BstDEI CTNAG 3 cut(s) 499, 900, 1056
BstF5I GGATG 6 cut(s) 265, 279, 326, 606, 1330, 1504
BstFNI CGCG 1 cut(s) 91
BstMCI CGRYCG 1 cut(s) 896
BstNI CCWGG 4 cut(s) 55, 331, 669, 999
BstNSI RCATGY 3 cut(s) 13, 709, 805
BstPAI GACNNNNGTC 1 cut(s) 822
BstSCI CCNGG 6 cut(s) 53, 268, 269, 329, 667, 997
BstSFI CTRYAG 2 cut(s) 294, 436
BstUI CGCG 1 cut(s) 91
BstV1I GCAGC 7 cut(s) 89, 280, 291, 326, 621, 721, 1361
BstV2I GAAGAC 1 cut(s) 1345
BstX2I RGATCY 1 cut(s) 1211
BstYI RGATCY 1 cut(s) 1211
BsuI GTATCC 1 cut(s) 363
BsuRI GGCC 6 cut(s) 200, 325, 356, 672, 1362, 1369
BtrI CACGTC 1 cut(s) 377
BtsCI GGATG 6 cut(s) 265, 279, 326, 606, 1330, 1504
BtsIMutI CAGTG 2 cut(s) 733, 802
Cac8I GCNNGC 7 cut(s) 20, 93, 336, 657, 982, 1354, 1413
CaiI CAGNNNCTG 1 cut(s) 1418
Cfr13I GGNCC 2 cut(s) 198, 1360
Cfr9I CCCGGG 1 cut(s) 269
CseI GACGC 1 cut(s) 1131
Csp6I GTAC 6 cut(s) 616, 631, 889, 951, 1157, 1319
CviAII CATG 9 cut(s) 10, 212, 634, 641, 706, 802, 1088, 1408, 1441
CviQI GTAC 6 cut(s) 616, 631, 889, 951, 1157, 1319
DdeI CTNAG 3 cut(s) 499, 900, 1056
DraIII CACNNNGTG 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 323
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
Eco147I AGGCCT 1 cut(s) 1369
Eco24I GRGCYC 3 cut(s) 53, 445, 507
Eco88I CYCGRG 3 cut(s) 269, 506, 1401
EcoRII CCWGG 4 cut(s) 53, 329, 667, 997
EcoT38I GRGCYC 3 cut(s) 53, 445, 507
FaeI CATG 9 cut(s) 13, 215, 637, 644, 709, 805, 1091, 1411, 1444
FalI AAGNNNNNCTT 2 cut(s) 589, 621
FaqI GGGAC 1 cut(s) 943
FatI CATG 9 cut(s) 9, 211, 633, 640, 705, 801, 1087, 1407, 1440
FauI CCCGC 2 cut(s) 84, 643
FbaI TGATCA 3 cut(s) 454, 556, 730
FokI GGATG 6 cut(s) 252, 286, 313, 613, 1337, 1491
FriOI GRGCYC 3 cut(s) 53, 445, 507
FspBI CTAG 7 cut(s) 335, 401, 578, 587, 867, 1166, 1335
GsaI CCCAGC 1 cut(s) 1299
GsuI CTGGAG 2 cut(s) 360, 369
HaeIII GGCC 6 cut(s) 200, 325, 356, 672, 1362, 1369
HapII CCGG 1 cut(s) 270
HgaI GACGC 1 cut(s) 1131
Hin1II CATG 9 cut(s) 13, 215, 637, 644, 709, 805, 1091, 1411, 1444
HindIII AAGCTT 2 cut(s) 126, 1037
HinfI GANTC 3 cut(s) 86, 386, 1397
HpaII CCGG 1 cut(s) 270
HphI GGTGA 2 cut(s) 227, 1041
Hpy188I TCNGA 5 cut(s) 85, 228, 288, 502, 1057
Hpy188III TCNNGA 6 cut(s) 446, 452, 761, 1231, 1401, 1508
Hpy99I CGWCG 1 cut(s) 381
HpyAV CCTTC 4 cut(s) 293, 575, 1062, 1193
HpyCH4III ACNGT 3 cut(s) 737, 743, 797
HpyCH4IV ACGT 3 cut(s) 376, 432, 593
HpyF3I CTNAG 3 cut(s) 499, 900, 1056
HpySE526I ACGT 3 cut(s) 376, 432, 593
Hsp92II CATG 9 cut(s) 13, 215, 637, 644, 709, 805, 1091, 1411, 1444
KpnI GGTACC 1 cut(s) 892
Ksp22I TGATCA 3 cut(s) 454, 556, 730
LmnI GCTCC 5 cut(s) 58, 262, 637, 1015, 1346
Lsp1109I GCAGC 7 cut(s) 89, 280, 291, 326, 621, 721, 1361
LweI GCATC 4 cut(s) 89, 766, 1226, 1411
MaeI CTAG 7 cut(s) 335, 401, 578, 587, 867, 1166, 1335
MaeII ACGT 3 cut(s) 376, 432, 593
MaeIII GTNAC 6 cut(s) 215, 589, 701, 737, 761, 877
MbiI CCGCTC 1 cut(s) 203
MboII GAAGA 6 cut(s) 244, 490, 1014, 1212, 1350, 1523
MfeI CAATTG 1 cut(s) 30
MflI RGATCY 1 cut(s) 1211
MhlI GDGCHC 3 cut(s) 53, 445, 507
MlsI TGGCCA 1 cut(s) 325
MluNI TGGCCA 1 cut(s) 325
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 2 cut(s) 93, 801
Mox20I TGGCCA 1 cut(s) 325
MscI TGGCCA 1 cut(s) 325
MseI TTAA 9 cut(s) 360, 696, 768, 785, 1101, 1143, 1314, 1497, 1660
MslI CAYNNNNRTG 4 cut(s) 192, 564, 744, 1445
Msp20I TGGCCA 1 cut(s) 325
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 6 cut(s) 55, 270, 271, 331, 669, 999
MunI CAATTG 1 cut(s) 30
Mva1269I GAATGC 1 cut(s) 282
MvaI CCWGG 4 cut(s) 55, 331, 669, 999
MvnI CGCG 1 cut(s) 91
NciI CCSGG 2 cut(s) 270, 271
NheI GCTAGC 1 cut(s) 334
NlaIII CATG 9 cut(s) 13, 215, 637, 644, 709, 805, 1091, 1411, 1444
NlaIV GGNNCC 3 cut(s) 199, 775, 890
NmuCI GTSAC 3 cut(s) 215, 737, 761
NspI RCATGY 3 cut(s) 13, 709, 805
OliI CACNNNNGTG 1 cut(s) 744
PaeR7I CTCGAG 1 cut(s) 1401
PasI CCCWGGG 1 cut(s) 54
PceI AGGCCT 1 cut(s) 1369
PcsI WCGNNNNNNNCGW 1 cut(s) 95
PctI GAATGC 1 cut(s) 282
PfeI GAWTC 2 cut(s) 386, 1397
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
PshAI GACNNNNGTC 1 cut(s) 822
Psp6I CCWGG 4 cut(s) 53, 329, 667, 997
PspFI CCCAGC 1 cut(s) 1295
PspGI CCWGG 4 cut(s) 53, 329, 667, 997
PspN4I GGNNCC 3 cut(s) 199, 775, 890
PspPI GGNCC 2 cut(s) 198, 1360
PstI CTGCAG 1 cut(s) 298
PstNI CAGNNNCTG 1 cut(s) 1418
PsuI RGATCY 1 cut(s) 1211
RsaI GTAC 6 cut(s) 617, 632, 890, 952, 1158, 1320
RsaNI GTAC 6 cut(s) 616, 631, 889, 951, 1157, 1319
RseI CAYNNNNRTG 4 cut(s) 192, 564, 744, 1445
SaqAI TTAA 9 cut(s) 360, 696, 768, 785, 1101, 1143, 1314, 1497, 1660
Sau96I GGNCC 2 cut(s) 198, 1360
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 6 cut(s) 55, 270, 271, 331, 669, 999
SduI GDGCHC 3 cut(s) 53, 445, 507
SfaNI GCATC 4 cut(s) 89, 766, 1226, 1411
SfcI CTRYAG 2 cut(s) 294, 436
Sfr274I CTCGAG 1 cut(s) 1401
SlaI CTCGAG 1 cut(s) 1401
SmaI CCCGGG 1 cut(s) 271
SmiMI CAYNNNNRTG 4 cut(s) 192, 564, 744, 1445
SmlI CTYRAG 3 cut(s) 112, 1229, 1401
SmoI CTYRAG 3 cut(s) 112, 1229, 1401
SseBI AGGCCT 1 cut(s) 1369
SsiI CCGC 7 cut(s) 91, 95, 201, 650, 896, 1044, 1202
SspMI CTAG 7 cut(s) 335, 401, 578, 587, 867, 1166, 1335
StuI AGGCCT 1 cut(s) 1369
StyD4I CCNGG 6 cut(s) 53, 268, 269, 329, 667, 997
TaaI ACNGT 3 cut(s) 737, 743, 797
TaiI ACGT 3 cut(s) 379, 435, 596
TaqI TCGA 4 cut(s) 145, 205, 379, 1402
TatI WGTACW 2 cut(s) 630, 950
TauI GCSGC 3 cut(s) 98, 203, 1047
TfiI GAWTC 2 cut(s) 386, 1397
Tru1I TTAA 9 cut(s) 360, 696, 768, 785, 1101, 1143, 1314, 1497, 1660
Tru9I TTAA 9 cut(s) 360, 696, 768, 785, 1101, 1143, 1314, 1497, 1660
TscAI CASTG 2 cut(s) 740, 802
TseFI GTSAC 3 cut(s) 215, 737, 761
TseI GCWGC 7 cut(s) 77, 279, 293, 314, 609, 709, 1349
Tsp45I GTSAC 3 cut(s) 215, 737, 761
TspDTI ATGAA 1 cut(s) 378
TspGWI ACGGA 2 cut(s) 562, 1260
TspMI CCCGGG 1 cut(s) 269
TspRI CASTG 2 cut(s) 740, 802
XapI RAATTY 2 cut(s) 534, 677
XceI RCATGY 3 cut(s) 13, 709, 805
XhoI CTCGAG 1 cut(s) 1401
XmaI CCCGGG 1 cut(s) 269
XspI CTAG 7 cut(s) 335, 401, 578, 587, 867, 1166, 1335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.