Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030110.1

Orthogroup ID

OG0014194

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 986

Gene Structure 986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030110.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

gcagctcagattccaattagagatgatccagtagcaaatgaagcagcattggatttggtgaggaaggacaagctaagagaagtgaaagcaggacatgatggaacttgggcagcacatccaggactaatcccagcctgcatggaaatcttcacaaacaacatgggccgcaacacccccaaccaaatccaaaccatgaggcgagaagatgcatcctccataaccgaagaagacctcttgcagaggcctagaggagtccgaaccctggagggtctccggctgaacacccgggtggggatccagtacctggcagcatggctaaccggagctggttcggtgccactttacaatctcatggaagatgctgcaacagctgagataagcagggttcagaactggcagtggatcaagtatggagtggagttggatggggatggacttggagtgagagtggggaaggaactgtttgggagagtggtggaagacgaaatggagaggattgaaagagaggttgggaaggacaaatttaagaagggaatgtacagagaggcttgcaagatgttcgcaaggcaatgcacagcgcaaactctagacgattttctgactctcgacgcttataatcatatcgtcttgcaccaccccaaggcatcatccaggctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004474 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005975 GO:0006081 GO:0006082 GO:0006097 GO:0008150 GO:0008152 GO:0009514 GO:0009987 GO:0016740 GO:0016746 GO:0019752 GO:0032787 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046487 GO:0046912 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00620 ko00630 ko01100 ko01110 ko01120 ko01200 map00620 map00630 map01100 map01110 map01120 map01200

Pfam Domains

Protein Families

Malate_synthase

Protein Analysis

219

Amino Acids

24.69

Weight (kDa)

6.27

Isoelectric Point (pI)

31.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03860 AT5G03860
fragaria_vesca	FvH4_5g07710
malus_domestica	MD06G1147700.v1.1
prunus_persica	Prupe.5G154600_v2.0.a1
pyrus_communis	pycom06g13710
rosa_chinensis	RchiOBHm_Chr7g0190721
rosa_laevigata	RLG00000004501
rosa_multiflora	Rmu_sc0030109.1_g000001 Rmu_sc0030110.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264350
rosa_rugosa	Rorug06G0506700
rosa_samantha	Rh7AG113300 Rh7BG115800 Rh7CG118300 Rh7DG117200
rosa_wichuraiana	Rw7G009890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
AccB1I	GGYRCC	1 cut(s)	334
AccB7I	CCANNNNNTGG	1 cut(s)	304
AciI	CCGC	1 cut(s)	166
AclWI	GGATC	4 cut(s)	20, 289, 302, 410
AcsI	RAATTY	1 cut(s)	521
AfaI	GTAC	2 cut(s)	302, 539
AfiI	CCNNNNNNNGG	4 cut(s)	262, 291, 304, 640
AgsI	TTSAA	1 cut(s)	500
AjnI	CCWGG	4 cut(s)	118, 261, 303, 650
AjuI	GAANNNNNNNTTGG	2 cut(s)	492, 524
AleI	CACNNNNGTG	1 cut(s)	287
AluBI	AGCT	4 cut(s)	5, 73, 326, 371
AluI	AGCT	4 cut(s)	5, 73, 326, 371
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	4 cut(s)	20, 289, 302, 410
AlwNI	CAGNNNCTG	1 cut(s)	304
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	2 cut(s)	163, 242
ApeKI	GCWGC	5 cut(s)	2, 44, 110, 308, 362
ApoI	RAATTY	1 cut(s)	521
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	2 cut(s)	286, 287
AsuHPI	GGTGA	1 cut(s)	70
AvaI	CYCGRG	1 cut(s)	285
BamHI	GGATCC	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	334
BarI	GAAGNNNNNNTAC	2 cut(s)	521, 553
BbsI	GAAGAC	2 cut(s)	234, 486
BbvI	GCAGC	5 cut(s)	14, 56, 122, 320, 349
BccI	CCATC	3 cut(s)	92, 419, 425
BcgI	CGANNNNNNTGC	2 cut(s)	541, 575
BciT130I	CCWGG	4 cut(s)	120, 263, 305, 652
BcnI	CCSGG	2 cut(s)	286, 287
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	2 cut(s)	246, 587
BisI	GCNGC	6 cut(s)	3, 45, 111, 166, 309, 363
BlsI	GCNGC	6 cut(s)	4, 46, 112, 167, 310, 364
Bme1390I	CCNGG	6 cut(s)	120, 263, 286, 287, 305, 652
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	296, 336
BmrFI	CCNGG	6 cut(s)	120, 263, 286, 287, 305, 652
BmsI	GCATC	4 cut(s)	196, 218, 349, 653
BpiI	GAAGAC	2 cut(s)	234, 486
BpmI	CTGGAG	1 cut(s)	284
BpuMI	CCSGG	2 cut(s)	286, 287
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	3 cut(s)	261, 285, 639
BsaWI	WCCGGW	1 cut(s)	320
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bsc4I	CCNNNNNNNGG	4 cut(s)	262, 291, 304, 640
Bse1I	ACTGG	3 cut(s)	29, 298, 398
Bse3DI	GCAATG	1 cut(s)	575
BseBI	CCWGG	4 cut(s)	120, 263, 305, 652
BseDI	CCNNGG	3 cut(s)	261, 285, 639
BseGI	GGATG	5 cut(s)	115, 209, 430, 436, 647
BseLI	CCNNNNNNNGG	4 cut(s)	262, 291, 304, 640
BseMI	GCAATG	1 cut(s)	575
BseMII	CTCAG	2 cut(s)	20, 363
BseNI	ACTGG	3 cut(s)	29, 298, 398
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	5 cut(s)	14, 56, 122, 320, 349
BseYI	CCCAGC	1 cut(s)	130
BshFI	GGCC	2 cut(s)	165, 244
BshNI	GGYRCC	1 cut(s)	334
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	3 cut(s)	274, 286, 321
BslI	CCNNNNNNNGG	4 cut(s)	262, 291, 304, 640
BsmAI	GTCTC	1 cut(s)	275
BsnI	GGCC	2 cut(s)	165, 244
Bso31I	GGTCTC	1 cut(s)	275
BsoBI	CYCGRG	1 cut(s)	285
Bsp1407I	TGTACA	1 cut(s)	537
Bsp143I	GATC	3 cut(s)	25, 294, 402
BspACI	CCGC	1 cut(s)	166
BspANI	GGCC	2 cut(s)	165, 244
BspCNI	CTCAG	2 cut(s)	19, 364
BspLI	GGNNCC	2 cut(s)	296, 336
BspPI	GGATC	4 cut(s)	20, 289, 302, 410
BspT107I	GGYRCC	1 cut(s)	334
BspTNI	GGTCTC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	575
BsrGI	TGTACA	1 cut(s)	537
BsrI	ACTGG	3 cut(s)	29, 298, 398
BssECI	CCNNGG	3 cut(s)	261, 285, 639
BssMI	GATC	3 cut(s)	25, 294, 402
BssT1I	CCWWGG	1 cut(s)	639
Bst2UI	CCWGG	4 cut(s)	120, 263, 305, 652
Bst4CI	ACNGT	1 cut(s)	462
BstAUI	TGTACA	1 cut(s)	537
BstC8I	GCNNGC	2 cut(s)	136, 550
BstDEI	CTNAG	3 cut(s)	6, 74, 372
BstF5I	GGATG	5 cut(s)	115, 209, 430, 436, 647
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	3 cut(s)	28, 297, 405
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	3 cut(s)	25, 294, 402
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 368
BstNI	CCWGG	4 cut(s)	120, 263, 305, 652
BstSCI	CCNGG	6 cut(s)	118, 261, 284, 285, 303, 650
BstV1I	GCAGC	5 cut(s)	14, 56, 122, 320, 349
BstV2I	GAAGAC	2 cut(s)	234, 486
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
BsuRI	GGCC	2 cut(s)	165, 244
BtsCI	GGATG	5 cut(s)	115, 209, 430, 436, 647
BtsI	GCAGTG	1 cut(s)	404
BtsIMutI	CAGTG	1 cut(s)	404
Cac8I	GCNNGC	2 cut(s)	136, 550
CaiI	CAGNNNCTG	1 cut(s)	304
CfoI	GCGC	1 cut(s)	580
Cfr13I	GGNCC	1 cut(s)	163
Cfr9I	CCCGGG	1 cut(s)	285
CseI	GACGC	1 cut(s)	617
Csp6I	GTAC	2 cut(s)	301, 538
CviAII	CATG	6 cut(s)	95, 139, 160, 193, 312, 352
CviQI	GTAC	2 cut(s)	301, 538
DdeI	CTNAG	3 cut(s)	6, 74, 372
DpnI	GATC	3 cut(s)	27, 296, 404
DpnII	GATC	3 cut(s)	25, 294, 402
Eco130I	CCWWGG	1 cut(s)	639
Eco147I	AGGCCT	1 cut(s)	244
Eco31I	GGTCTC	1 cut(s)	275
Eco88I	CYCGRG	1 cut(s)	285
EcoRII	CCWGG	4 cut(s)	118, 261, 303, 650
EcoT14I	CCWWGG	1 cut(s)	639
EcoT22I	ATGCAT	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	639
FaeI	CATG	6 cut(s)	98, 142, 163, 196, 315, 355
FatI	CATG	6 cut(s)	94, 138, 159, 192, 311, 351
Fnu4HI	GCNGC	6 cut(s)	3, 45, 111, 166, 309, 363
FokI	GGATG	5 cut(s)	102, 196, 437, 443, 634
Fsp4HI	GCNGC	6 cut(s)	3, 45, 111, 166, 309, 363
FspBI	CTAG	2 cut(s)	246, 587
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	6 cut(s)	3, 45, 111, 166, 309, 363
GsaI	CCCAGC	1 cut(s)	134
GsuI	CTGGAG	1 cut(s)	284
HaeIII	GGCC	2 cut(s)	165, 244
HapII	CCGG	3 cut(s)	274, 286, 321
HgaI	GACGC	1 cut(s)	617
HhaI	GCGC	1 cut(s)	580
Hin1II	CATG	6 cut(s)	98, 142, 163, 196, 315, 355
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HinfI	GANTC	3 cut(s)	10, 252, 601
HpaII	CCGG	3 cut(s)	274, 286, 321
HphI	GGTGA	1 cut(s)	70
Hpy188I	TCNGA	4 cut(s)	9, 257, 390, 600
Hpy188III	TCNNGA	2 cut(s)	587, 605
Hpy99I	CGWCG	1 cut(s)	611
HpyAV	CCTTC	4 cut(s)	58, 448, 508, 523
HpyCH4III	ACNGT	1 cut(s)	462
HpyCH4V	TGCA	7 cut(s)	138, 209, 238, 365, 552, 573, 631
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 368
HpyF3I	CTNAG	3 cut(s)	6, 74, 372
Hsp92II	CATG	6 cut(s)	98, 142, 163, 196, 315, 355
HspAI	GCGC	1 cut(s)	578
Kzo9I	GATC	3 cut(s)	25, 294, 402
LmnI	GCTCC	1 cut(s)	323
Lsp1109I	GCAGC	5 cut(s)	14, 56, 122, 320, 349
LweI	GCATC	4 cut(s)	196, 218, 349, 653
MaeI	CTAG	2 cut(s)	246, 587
MalI	GATC	3 cut(s)	27, 296, 404
MboI	GATC	3 cut(s)	25, 294, 402
MboII	GAAGA	6 cut(s)	139, 215, 236, 239, 368, 491
MflI	RGATCY	1 cut(s)	294
MluCI	AATT	2 cut(s)	15, 521
MlyI	GAGTC	2 cut(s)	261, 595
MmeI	TCCRAC	1 cut(s)	402
Mph1103I	ATGCAT	1 cut(s)	211
MseI	TTAA	1 cut(s)	525
MslI	CAYNNNNRTG	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	3 cut(s)	274, 286, 321
MspR9I	CCNGG	6 cut(s)	120, 263, 286, 287, 305, 652
MvaI	CCWGG	4 cut(s)	120, 263, 305, 652
MwoI	GCNNNNNNNGC	2 cut(s)	41, 368
NciI	CCSGG	2 cut(s)	286, 287
NdeII	GATC	3 cut(s)	25, 294, 402
NlaIII	CATG	6 cut(s)	98, 142, 163, 196, 315, 355
NlaIV	GGNNCC	2 cut(s)	296, 336
NsiI	ATGCAT	1 cut(s)	211
OliI	CACNNNNGTG	1 cut(s)	287
PceI	AGGCCT	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	10
PflMI	CCANNNNNTGG	1 cut(s)	304
PfoI	TCCNGGA	1 cut(s)	118
PkrI	GCNGC	6 cut(s)	4, 46, 112, 167, 310, 364
PleI	GAGTC	2 cut(s)	260, 595
PpsI	GAGTC	2 cut(s)	260, 595
PsiI	TTATAA	1 cut(s)	615
Psp6I	CCWGG	4 cut(s)	118, 261, 303, 650
PspFI	CCCAGC	1 cut(s)	130
PspGI	CCWGG	4 cut(s)	118, 261, 303, 650
PspN4I	GGNNCC	2 cut(s)	296, 336
PspPI	GGNCC	1 cut(s)	163
PstNI	CAGNNNCTG	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	294
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	2 cut(s)	302, 539
RsaNI	GTAC	2 cut(s)	301, 538
RseI	CAYNNNNRTG	1 cut(s)	287
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	6 cut(s)	3, 45, 111, 166, 309, 363
Sau3AI	GATC	3 cut(s)	25, 294, 402
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	2 cut(s)	261, 595
ScrFI	CCNGG	6 cut(s)	120, 263, 286, 287, 305, 652
SetI	ASST	7 cut(s)	7, 75, 234, 306, 328, 373, 510
SfaNI	GCATC	4 cut(s)	196, 218, 349, 653
SmaI	CCCGGG	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	287
Sse9I	AATT	2 cut(s)	15, 521
SseBI	AGGCCT	1 cut(s)	244
SsiI	CCGC	1 cut(s)	166
SspMI	CTAG	2 cut(s)	246, 587
StuI	AGGCCT	1 cut(s)	244
StyD4I	CCNGG	6 cut(s)	118, 261, 284, 285, 303, 650
StyI	CCWWGG	1 cut(s)	639
TaaI	ACNGT	1 cut(s)	462
TaqI	TCGA	1 cut(s)	606
TasI	AATT	2 cut(s)	15, 521
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	1 cut(s)	404
TseI	GCWGC	5 cut(s)	2, 44, 110, 308, 362
TspDTI	ATGAA	1 cut(s)	54
TspMI	CCCGGG	1 cut(s)	285
TspRI	CASTG	1 cut(s)	404
Van91I	CCANNNNNTGG	1 cut(s)	304
XapI	RAATTY	1 cut(s)	521
XbaI	TCTAGA	1 cut(s)	586
XmaI	CCCGGG	1 cut(s)	285
XspI	CTAG	2 cut(s)	246, 587
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.