Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002301

Physical Location & Seq

Genomic Coordinates Reverse (-)

62189657 .. 62193988

Gene Structure 4332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0506700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTTGCCTTCAACCCAATTGAAAAAAGGTGGCGCATGGAGGCCACAATTGTTCAAAGACATTATGGTCATGTCCAAGTCAAGGTCTCGTTCACAAATGAAAAGACCAAGATGGATTATTGCATTGGTTTGTATTCTCTGCGTTTTTCTGATTACTGCTTATTTCTATCCGTCGGAAAGCTCTACGACATGCTATCTCTTCTCATCTCCTAATTGTGATGGGATATTTGGAAAGACTCCACCTAGTCCTGCAAGGGAACTAACTGACGATGAGACTGCATCTTCAGTTGTAGTTAAGGAAATTCTTAATACGCCTCCTCTTCAGTCGAAGAACCCGAAAATCGCTTTCATGTTTTTGACTCCGGGCACGTTACCTTTCGAGGAGTTATGGGAAAATTTCTTTCAAGGCCATGAGGACAAATTCAGTGTTTATGTACATGCATCTAAGCAGAAACCAATACATGTGAGCCGCTATTTTGTTGATAGAGACATACATAGTGAACAGGTAGTTTGGGGAAAATTTTCAATGGTTGAGGCAGAAAAGAGACTCTTGGCCAATGCACTTTTAGACCCTGATAACCAACACTTCGTTCTGCTGTCTGACAGCTGCATACCACTGCATAGCTTTGATTATGTATATAATTATCTCATGTACACGAATGTCAGCTTTATAGACTGTTTTGTGGATCCCGGTCCACATGGAACTGGACGGTATGCTGAGCAAATGATGCCGGAAGTTGAAAAGCACGAATTTCGAAAGGGTTCACAGTGGTTCACTATGAAGAGGCAACATGCTATTGTCATGATGGCAGACAGTCTATACTATACCAAGTTCAAGCTTCACTGCAGGCCGAACATGGACGGCCGCAACTGCTATTCGGACGAGCATTACCTGCCAACCTTCTTTCGGATGAAAGATCCTGCTGGTCTTGCAAATTGGTCGGTAACATTTGTTGATTGGTCTGAAGGGAAATGGCATCCAAGAGCATTTAGGACTCAGGATGTTACTTATGATCTTCTTAGGAACATCACGTCTATCGCTGATAGCACACATGTGACAAGTGATGCAACGGTACAACTAACCTTTCTGAAAAAACTGATTCAAATAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

370

Amino Acids

42.85

Weight (kDa)

8.04

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	114 - 343	9.7e-81	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63370 AT5G63370 AT5G63370 AT5G63370 AT5G63370 AT5G63370 AT5G63370 AT5G63370 AT5G63370 AT5G63370
fragaria_vesca	FvH4_5g07740
malus_domestica	MD06G1147400.v1.1 MD06G1147600.v1.1 MD14G1161600.v1.1
prunus_persica	Prupe.5G154500_v2.0.a1 Prupe.5G154500_v2.0.a1 Prupe.5G154500_v2.0.a1 Prupe.5G154500_v2.0.a1 Prupe.5G154500_v2.0.a1 Prupe.5G154500_v2.0.a1 Prupe.5G154500_v2.0.a1
pyrus_communis	pycom06g13700
rosa_chinensis	RchiOBHm_Chr7g0190701 RchiOBHm_Chr7g0190711
rosa_laevigata	RLG00000004502
rosa_multiflora	Rmu_co8410623.1_g000001 Rmu_sc0006709.1_g000001 Rmu_sc0014053.1_g000001 Rmu_sc0021017.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264390
rosa_rugosa	Rorug06G0506600 Rorug06G0506700
rosa_samantha	Rh7AG113100 Rh7AG113200 Rh7BG115600 Rh7BG115700 Rh7CG118100 Rh7CG118200 Rh7DG117000 Rh7DG117100
rosa_wichuraiana	Rw7G009870 Rw7G009880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	65
Acc36I	ACCTGC	1 cut(s)	900
AciI	CCGC	2 cut(s)	469, 865
AclWI	GGATC	3 cut(s)	680, 693, 911
AcoI	YGGCCR	2 cut(s)	552, 862
AcsI	RAATTY	5 cut(s)	300, 394, 419, 518, 749
AcuI	CTGAAG	3 cut(s)	267, 305, 984
AfaI	GTAC	3 cut(s)	435, 653, 1074
AfiI	CCNNNNNNNGG	2 cut(s)	81, 906
AflIII	ACRYGT	2 cut(s)	460, 1051
AgsI	TTSAA	8 cut(s)	12, 22, 55, 404, 525, 740, 835, 1103
AjiI	CACGTC	1 cut(s)	1032
AjuI	GAANNNNNNNTTGG	2 cut(s)	573, 605
AleI	CACNNNNGTG	1 cut(s)	1052
AluBI	AGCT	5 cut(s)	180, 606, 624, 666, 838
AluI	AGCT	5 cut(s)	180, 606, 624, 666, 838
Alw26I	GTCTC	4 cut(s)	90, 266, 480, 538
AlwI	GGATC	3 cut(s)	680, 693, 911
AoxI	GGCC	5 cut(s)	41, 406, 552, 848, 862
ApeKI	GCWGC	1 cut(s)	606
ApoI	RAATTY	5 cut(s)	300, 394, 419, 518, 749
Asp700I	GAANNNNTTC	2 cut(s)	520, 760
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	692
AsuC2I	CCSGG	2 cut(s)	363, 690
AsuII	TTCGAA	1 cut(s)	754
AvaII	GGWCC	1 cut(s)	692
BaeGI	GKGCMC	1 cut(s)	368
BalI	TGGCCA	1 cut(s)	554
BamHI	GGATCC	1 cut(s)	685
BbvI	GCAGC	1 cut(s)	593
BccI	CCATC	3 cut(s)	105, 212, 799
BceAI	ACGGC	1 cut(s)	877
BcgI	CGANNNNNNTGC	6 cut(s)	257, 291, 734, 768, 921, 955
BcnI	CCSGG	2 cut(s)	363, 690
BcoDI	GTCTC	4 cut(s)	90, 266, 480, 538
BfaI	CTAG	1 cut(s)	243
BfmI	CTRYAG	1 cut(s)	844
BfuAI	ACCTGC	1 cut(s)	900
BisI	GCNGC	3 cut(s)	469, 607, 865
BlpI	GCTNAGC	1 cut(s)	717
BlsI	GCNGC	3 cut(s)	470, 608, 866
Bme1390I	CCNGG	2 cut(s)	363, 690
Bme18I	GGWCC	1 cut(s)	692
BmgBI	CACGTC	1 cut(s)	1032
BmgT120I	GGNCC	1 cut(s)	692
BmiI	GGNNCC	1 cut(s)	687
BmrFI	CCNGG	2 cut(s)	363, 690
BmsI	GCATC	5 cut(s)	287, 449, 717, 985, 1054
Bpu1102I	GCTNAGC	1 cut(s)	717
Bpu14I	TTCGAA	1 cut(s)	754
BpuMI	CCSGG	2 cut(s)	363, 690
BsaI	GGTCTC	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 906
Bse1I	ACTGG	1 cut(s)	709
BseGI	GGATG	3 cut(s)	915, 976, 1006
BseLI	CCNNNNNNNGG	2 cut(s)	81, 906
BseMII	CTCAG	2 cut(s)	708, 1010
BseNI	ACTGG	1 cut(s)	709
BseRI	GAGGAG	2 cut(s)	306, 395
BseSI	GKGCMC	1 cut(s)	368
BseX3I	CGGCCG	1 cut(s)	862
BseXI	GCAGC	1 cut(s)	593
Bsh1285I	CGRYCG	1 cut(s)	865
BshFI	GGCC	5 cut(s)	43, 408, 554, 850, 864
BsiEI	CGRYCG	1 cut(s)	865
BsiSI	CCGG	3 cut(s)	362, 690, 731
BslI	CCNNNNNNNGG	2 cut(s)	81, 906
BsmAI	GTCTC	4 cut(s)	90, 266, 480, 538
BsnI	GGCC	5 cut(s)	43, 408, 554, 850, 864
Bso31I	GGTCTC	1 cut(s)	90
Bsp119I	TTCGAA	1 cut(s)	754
Bsp1286I	GDGCHC	1 cut(s)	368
Bsp1407I	TGTACA	2 cut(s)	433, 651
Bsp143I	GATC	3 cut(s)	685, 916, 1012
Bsp1720I	GCTNAGC	1 cut(s)	717
BspACI	CCGC	2 cut(s)	469, 865
BspANI	GGCC	5 cut(s)	43, 408, 554, 850, 864
BspCNI	CTCAG	2 cut(s)	709, 1009
BspHI	TCATGA	1 cut(s)	801
BspLI	GGNNCC	1 cut(s)	687
BspMAI	CTGCAG	1 cut(s)	848
BspMI	ACCTGC	1 cut(s)	900
BspPI	GGATC	3 cut(s)	680, 693, 911
BspT104I	TTCGAA	1 cut(s)	754
BspTNI	GGTCTC	1 cut(s)	90
BsrGI	TGTACA	2 cut(s)	433, 651
BsrI	ACTGG	1 cut(s)	709
BssMI	GATC	3 cut(s)	685, 916, 1012
Bst4CI	ACNGT	5 cut(s)	677, 711, 768, 815, 1072
Bst6I	CTCTTC	3 cut(s)	203, 324, 776
BstAPI	GCANNNNNTGC	2 cut(s)	727, 892
BstAUI	TGTACA	2 cut(s)	433, 651
BstBI	TTCGAA	1 cut(s)	754
BstC8I	GCNNGC	1 cut(s)	848
BstDEI	CTNAG	4 cut(s)	444, 717, 996, 1019
BstF5I	GGATG	3 cut(s)	915, 976, 1006
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	3 cut(s)	688, 919, 1015
BstMAI	GTCTC	4 cut(s)	90, 266, 480, 538
BstMBI	GATC	3 cut(s)	685, 916, 1012
BstMCI	CGRYCG	1 cut(s)	865
BstMWI	GCNNNNNNNGC	4 cut(s)	727, 870, 892, 929
BstNSI	RCATGY	5 cut(s)	192, 440, 464, 794, 1055
BstSCI	CCNGG	2 cut(s)	361, 688
BstSFI	CTRYAG	1 cut(s)	844
BstSLI	GKGCMC	1 cut(s)	368
BstV1I	GCAGC	1 cut(s)	593
BstX2I	RGATCY	2 cut(s)	685, 916
BstYI	RGATCY	2 cut(s)	685, 916
BstZI	CGGCCG	1 cut(s)	862
BsuRI	GGCC	5 cut(s)	43, 408, 554, 850, 864
BtrI	CACGTC	1 cut(s)	1032
BtsCI	GGATG	3 cut(s)	915, 976, 1006
BtsI	GCAGTG	2 cut(s)	614, 841
BtsIMutI	CAGTG	4 cut(s)	430, 614, 773, 841
BveI	ACCTGC	1 cut(s)	900
Cac8I	GCNNGC	1 cut(s)	848
CciI	TCATGA	1 cut(s)	801
CfoI	GCGC	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	692
Csp6I	GTAC	3 cut(s)	434, 652, 1073
CviQI	GTAC	3 cut(s)	434, 652, 1073
DdeI	CTNAG	4 cut(s)	444, 717, 996, 1019
DpnI	GATC	3 cut(s)	687, 918, 1014
DpnII	GATC	3 cut(s)	685, 916, 1012
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
EaeI	YGGCCR	2 cut(s)	552, 862
EagI	CGGCCG	1 cut(s)	862
Eam1104I	CTCTTC	3 cut(s)	203, 324, 776
EarI	CTCTTC	3 cut(s)	203, 324, 776
EclXI	CGGCCG	1 cut(s)	862
Eco31I	GGTCTC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	692
Eco52I	CGGCCG	1 cut(s)	862
Eco57I	CTGAAG	3 cut(s)	267, 305, 984
EcoT22I	ATGCAT	1 cut(s)	442
FalI	AAGNNNNNCTT	2 cut(s)	533, 565
Fnu4HI	GCNGC	3 cut(s)	469, 607, 865
FokI	GGATG	3 cut(s)	922, 963, 1013
Fsp4HI	GCNGC	3 cut(s)	469, 607, 865
FspBI	CTAG	1 cut(s)	243
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	3 cut(s)	469, 607, 865
HaeIII	GGCC	5 cut(s)	43, 408, 554, 850, 864
HapII	CCGG	3 cut(s)	362, 690, 731
HhaI	GCGC	1 cut(s)	35
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	836
HinfI	GANTC	5 cut(s)	235, 358, 546, 994, 1099
HpaII	CCGG	3 cut(s)	362, 690, 731
Hpy166II	GTNNAC	6 cut(s)	92, 500, 654, 695, 764, 774
Hpy188I	TCNGA	7 cut(s)	150, 175, 601, 880, 909, 964, 1089
Hpy188III	TCNNGA	2 cut(s)	802, 998
Hpy8I	GTNNAC	6 cut(s)	92, 500, 654, 695, 764, 774
Hpy99I	CGWCG	1 cut(s)	175
HpyAV	CCTTC	3 cut(s)	18, 910, 959
HpyCH4III	ACNGT	5 cut(s)	677, 711, 768, 815, 1072
HpyCH4IV	ACGT	2 cut(s)	368, 1031
HpyF10VI	GCNNNNNNNGC	4 cut(s)	727, 870, 892, 929
HpyF3I	CTNAG	4 cut(s)	444, 717, 996, 1019
HpySE526I	ACGT	2 cut(s)	368, 1031
HspAI	GCGC	1 cut(s)	33
Kzo9I	GATC	3 cut(s)	685, 916, 1012
Lsp1109I	GCAGC	1 cut(s)	593
LweI	GCATC	5 cut(s)	287, 449, 717, 985, 1054
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	2 cut(s)	368, 1031
MaeIII	GTNAC	4 cut(s)	369, 943, 1003, 1054
MalI	GATC	3 cut(s)	687, 918, 1014
MboI	GATC	3 cut(s)	685, 916, 1012
MboII	GAAGA	6 cut(s)	190, 273, 311, 340, 793, 1007
MfeI	CAATTG	2 cut(s)	17, 47
MflI	RGATCY	2 cut(s)	685, 916
MhlI	GDGCHC	1 cut(s)	368
MlsI	TGGCCA	1 cut(s)	554
MluNI	TGGCCA	1 cut(s)	554
MlyI	GAGTC	4 cut(s)	229, 352, 540, 988
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	7 cut(s)	33, 324, 327, 373, 406, 526, 777
Mox20I	TGGCCA	1 cut(s)	554
Mph1103I	ATGCAT	1 cut(s)	442
MroXI	GAANNNNTTC	2 cut(s)	520, 760
MscI	TGGCCA	1 cut(s)	554
MseI	TTAA	2 cut(s)	294, 306
MslI	CAYNNNNRTG	1 cut(s)	1052
Msp20I	TGGCCA	1 cut(s)	554
MspA1I	CMGCKG	1 cut(s)	606
MspI	CCGG	3 cut(s)	362, 690, 731
MspR9I	CCNGG	2 cut(s)	363, 690
MunI	CAATTG	2 cut(s)	17, 47
MwoI	GCNNNNNNNGC	4 cut(s)	727, 870, 892, 929
NciI	CCSGG	2 cut(s)	363, 690
NdeII	GATC	3 cut(s)	685, 916, 1012
NlaIV	GGNNCC	1 cut(s)	687
NmuCI	GTSAC	1 cut(s)	1054
NsiI	ATGCAT	1 cut(s)	442
NspI	RCATGY	5 cut(s)	192, 440, 464, 794, 1055
NspV	TTCGAA	1 cut(s)	754
OliI	CACNNNNGTG	1 cut(s)	1052
PagI	TCATGA	1 cut(s)	801
PciI	ACATGT	2 cut(s)	460, 1051
PcsI	WCGNNNNNNNCGW	1 cut(s)	332
PdmI	GAANNNNTTC	2 cut(s)	520, 760
PfeI	GAWTC	1 cut(s)	1099
PkrI	GCNGC	3 cut(s)	470, 608, 866
PleI	GAGTC	4 cut(s)	229, 352, 540, 988
PpsI	GAGTC	4 cut(s)	229, 352, 540, 988
PscI	ACATGT	2 cut(s)	460, 1051
PspN4I	GGNNCC	1 cut(s)	687
PspPI	GGNCC	1 cut(s)	692
PstI	CTGCAG	1 cut(s)	848
PsuI	RGATCY	2 cut(s)	685, 916
PvuII	CAGCTG	1 cut(s)	606
RsaI	GTAC	3 cut(s)	435, 653, 1074
RsaNI	GTAC	3 cut(s)	434, 652, 1073
RseI	CAYNNNNRTG	1 cut(s)	1052
SaqAI	TTAA	2 cut(s)	294, 306
SatI	GCNGC	3 cut(s)	469, 607, 865
Sau3AI	GATC	3 cut(s)	685, 916, 1012
Sau96I	GGNCC	1 cut(s)	692
SchI	GAGTC	4 cut(s)	229, 352, 540, 988
ScrFI	CCNGG	2 cut(s)	363, 690
SduI	GDGCHC	1 cut(s)	368
SfaNI	GCATC	5 cut(s)	287, 449, 717, 985, 1054
SfcI	CTRYAG	1 cut(s)	844
SfuI	TTCGAA	1 cut(s)	754
SinI	GGWCC	1 cut(s)	692
SmiMI	CAYNNNNRTG	1 cut(s)	1052
SsiI	CCGC	2 cut(s)	469, 865
SspMI	CTAG	1 cut(s)	243
StyD4I	CCNGG	2 cut(s)	361, 688
TaaI	ACNGT	5 cut(s)	677, 711, 768, 815, 1072
TaiI	ACGT	2 cut(s)	371, 1034
TaqI	TCGA	3 cut(s)	326, 378, 754
TatI	WGTACW	2 cut(s)	433, 651
TauI	GCSGC	2 cut(s)	471, 867
TfiI	GAWTC	1 cut(s)	1099
Tru1I	TTAA	2 cut(s)	294, 306
Tru9I	TTAA	2 cut(s)	294, 306
TscAI	CASTG	4 cut(s)	430, 621, 773, 848
TseFI	GTSAC	1 cut(s)	1054
TseI	GCWGC	1 cut(s)	606
Tsp45I	GTSAC	1 cut(s)	1054
TspDTI	ATGAA	4 cut(s)	113, 337, 794, 926
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	4 cut(s)	430, 621, 773, 848
VpaK11BI	GGWCC	1 cut(s)	692
XapI	RAATTY	5 cut(s)	300, 394, 419, 518, 749
XceI	RCATGY	5 cut(s)	192, 440, 464, 794, 1055
XmnI	GAANNNNTTC	2 cut(s)	520, 760
XspI	CTAG	1 cut(s)	243
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.