Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002301

Physical Location & Seq

Genomic Coordinates Reverse (-)

62185496 .. 62188313

Gene Structure 2818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0506600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCGCCGAAGAAACGCAAGGCTGACGAGGAAACCGAGCCGGCCAAGAGCCCCGCCGAGTCAACTCGGATGGTGACTCGTGCCTCAGACGCCGCAGCTCGGCGGCAGACTCGGAGCTCCACTCAGGGAGGTCATGGTAAGAGTGTGAAACCGGTTCCTCGGAAACCGGCTGTGGCGGCGAGGAAGAAGAGCAAGAAGAAAGAGGAGGCCGAATCGGAGCAAGGCGAGGTGGCCAAGTCTGAAGAAGGCGAGGAGGTGAACATGAAGACTATTGTGATTGAGCGCTGCACGCAATGCAATTCATTCAAGACAAGGGCTGATCAGGTGAGAGCTAGTCTGGAGGGTCTGCCTGGCATCAGAGTGACAATTAATCCTGTTAAGCCAAGAAGGGGTTGCTTTGAAATACGGGAAGAAGGTGTTGAGACGTTCATCAGTCTTTTGGACATGAAGCGACCATTTAAACCACTGAAGGATCTGAACATGCAGGAAGTCATTGACAATATAATTCAGAAGATCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008380 GO:0009555 GO:0009653 GO:0009889 GO:0009987 GO:0010208 GO:0010467 GO:0010468 GO:0010556 GO:0010584 GO:0010675 GO:0010927 GO:0010962 GO:0016043 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022607 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032952 GO:0032953 GO:0032989 GO:0034641 GO:0036211 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045229 GO:0046483 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0085029 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

173

Amino Acids

19.34

Weight (kDa)

9.68

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63370 AT5G63370 AT5G63370 AT5G63370 AT5G63370 AT5G63370 AT5G63370 AT5G63370 AT5G63370 AT5G63370
fragaria_vesca	FvH4_5g07740
malus_domestica	MD06G1147400.v1.1 MD06G1147600.v1.1 MD14G1161600.v1.1
prunus_persica	Prupe.5G154500_v2.0.a1 Prupe.5G154500_v2.0.a1 Prupe.5G154500_v2.0.a1 Prupe.5G154500_v2.0.a1 Prupe.5G154500_v2.0.a1 Prupe.5G154500_v2.0.a1 Prupe.5G154500_v2.0.a1
pyrus_communis	pycom06g13700
rosa_chinensis	RchiOBHm_Chr7g0190701 RchiOBHm_Chr7g0190711
rosa_laevigata	RLG00000004502
rosa_multiflora	Rmu_co8410623.1_g000001 Rmu_sc0006709.1_g000001 Rmu_sc0014053.1_g000001 Rmu_sc0021017.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264390
rosa_rugosa	Rorug06G0506600 Rorug06G0506700
rosa_samantha	Rh7AG113100 Rh7AG113200 Rh7BG115600 Rh7BG115700 Rh7CG118100 Rh7CG118200 Rh7DG117000 Rh7DG117100
rosa_wichuraiana	Rw7G009870 Rw7G009880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	4 cut(s)	54, 93, 103, 176
AclWI	GGATC	2 cut(s)	480, 508
AcoI	YGGCCR	2 cut(s)	42, 231
AcuI	CTGAAG	2 cut(s)	261, 488
AcyI	GRCGYC	2 cut(s)	5, 90
AfeI	AGCGCT	1 cut(s)	284
AfiI	CCNNNNNNNGG	2 cut(s)	99, 389
AgeI	ACCGGT	1 cut(s)	151
AgsI	TTSAA	2 cut(s)	307, 401
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	3 cut(s)	98, 117, 332
AluI	AGCT	3 cut(s)	98, 117, 332
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	2 cut(s)	480, 508
Aor51HI	AGCGCT	1 cut(s)	284
AoxI	GGCC	3 cut(s)	42, 207, 231
ApeKI	GCWGC	2 cut(s)	95, 285
AseI	ATTAAT	1 cut(s)	369
AsiGI	ACCGGT	1 cut(s)	151
AspLEI	GCGC	2 cut(s)	7, 285
AsuHPI	GGTGA	3 cut(s)	85, 268, 337
BalI	TGGCCA	1 cut(s)	233
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	53, 119
BauI	CACGAG	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	107, 272
BccI	CCATC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	351
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	1 cut(s)	333
BfoI	RGCGCY	2 cut(s)	8, 286
BisI	GCNGC	5 cut(s)	93, 96, 104, 177, 286
BlsI	GCNGC	5 cut(s)	94, 97, 105, 178, 287
Bme1390I	CCNGG	1 cut(s)	351
BmiI	GGNNCC	2 cut(s)	6, 156
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	1 cut(s)	363
BpiI	GAAGAC	1 cut(s)	272
BplI	GAGNNNNNCTC	2 cut(s)	106, 138
BpmI	CTGGAG	1 cut(s)	359
BsaHI	GRCGYC	2 cut(s)	5, 90
BsaJI	CCNNGG	1 cut(s)	158
BsaWI	WCCGGW	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 389
Bse118I	RCCGGY	3 cut(s)	40, 151, 166
Bse3DI	GCAATG	1 cut(s)	299
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	158
BseGI	GGATG	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	99, 389
BseMI	GCAATG	1 cut(s)	299
BseMII	CTCAG	2 cut(s)	99, 137
BseRI	GAGGAG	2 cut(s)	218, 266
BseXI	GCAGC	2 cut(s)	107, 272
BsgI	GTGCAG	1 cut(s)	271
BshFI	GGCC	3 cut(s)	44, 209, 233
BshNI	GGYRCC	1 cut(s)	4
BshTI	ACCGGT	1 cut(s)	151
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	3 cut(s)	41, 152, 167
BslI	CCNNNNNNNGG	2 cut(s)	99, 389
BsmAI	GTCTC	1 cut(s)	416
BsmBI	CGTCTC	1 cut(s)	416
BsnI	GGCC	3 cut(s)	44, 209, 233
Bsp1286I	GDGCHC	2 cut(s)	53, 119
Bsp143I	GATC	3 cut(s)	319, 472, 513
BspACI	CCGC	4 cut(s)	54, 93, 103, 176
BspANI	GGCC	3 cut(s)	44, 209, 233
BspCNI	CTCAG	2 cut(s)	98, 136
BspLI	GGNNCC	2 cut(s)	6, 156
BspPI	GGATC	2 cut(s)	480, 508
BspQI	GCTCTTC	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	299
BsrFI	RCCGGY	3 cut(s)	40, 151, 166
BssAI	RCCGGY	3 cut(s)	40, 151, 166
BssECI	CCNNGG	1 cut(s)	158
BssMI	GATC	3 cut(s)	319, 472, 513
BssNI	GRCGYC	2 cut(s)	5, 90
BssSI	CACGAG	1 cut(s)	78
Bst2BI	CACGAG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	351
Bst6I	CTCTTC	1 cut(s)	182
BstACI	GRCGYC	2 cut(s)	5, 90
BstAPI	GCANNNNNTGC	1 cut(s)	294
BstC8I	GCNNGC	2 cut(s)	42, 290
BstDEI	CTNAG	2 cut(s)	85, 123
BstF5I	GGATG	1 cut(s)	75
BstH2I	RGCGCY	2 cut(s)	8, 286
BstHHI	GCGC	2 cut(s)	7, 285
BstKTI	GATC	3 cut(s)	322, 475, 516
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	3 cut(s)	319, 472, 513
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 176, 289, 294
BstNI	CCWGG	1 cut(s)	351
BstNSI	RCATGY	1 cut(s)	484
BstSCI	CCNGG	1 cut(s)	349
BstV1I	GCAGC	2 cut(s)	107, 272
BstV2I	GAAGAC	1 cut(s)	272
BstX2I	RGATCY	2 cut(s)	472, 513
BstYI	RGATCY	2 cut(s)	472, 513
BsuRI	GGCC	3 cut(s)	44, 209, 233
BtsCI	GGATG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	464
Cac8I	GCNNGC	2 cut(s)	42, 290
CfoI	GCGC	2 cut(s)	7, 285
Cfr10I	RCCGGY	3 cut(s)	40, 151, 166
CseI	GACGC	1 cut(s)	98
CspAI	ACCGGT	1 cut(s)	151
CviAII	CATG	4 cut(s)	134, 262, 445, 481
DdeI	CTNAG	2 cut(s)	85, 123
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	3 cut(s)	321, 474, 515
DpnII	GATC	3 cut(s)	319, 472, 513
DraI	TTTAAA	1 cut(s)	460
EaeI	YGGCCR	2 cut(s)	42, 231
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Ecl136II	GAGCTC	1 cut(s)	117
Eco24I	GRGCYC	2 cut(s)	53, 119
Eco47III	AGCGCT	1 cut(s)	284
Eco53kI	GAGCTC	1 cut(s)	117
Eco57I	CTGAAG	2 cut(s)	261, 488
EcoICRI	GAGCTC	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	349
EcoT38I	GRGCYC	2 cut(s)	53, 119
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	416
FaeI	CATG	4 cut(s)	137, 265, 448, 484
FaiI	YATR	5 cut(s)	135, 263, 446, 482, 503
FatI	CATG	4 cut(s)	133, 261, 444, 480
FauI	CCCGC	1 cut(s)	61
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	5 cut(s)	93, 96, 104, 177, 286
FokI	GGATG	1 cut(s)	82
FriOI	GRGCYC	2 cut(s)	53, 119
Fsp4HI	GCNGC	5 cut(s)	93, 96, 104, 177, 286
FspBI	CTAG	1 cut(s)	333
GlaI	GCGC	2 cut(s)	6, 284
GluI	GCNGC	5 cut(s)	93, 96, 104, 177, 286
GsuI	CTGGAG	1 cut(s)	359
HaeII	RGCGCY	2 cut(s)	8, 286
HaeIII	GGCC	3 cut(s)	44, 209, 233
HapII	CCGG	3 cut(s)	41, 152, 167
HgaI	GACGC	1 cut(s)	98
HhaI	GCGC	2 cut(s)	7, 285
Hin1I	GRCGYC	2 cut(s)	5, 90
Hin1II	CATG	4 cut(s)	137, 265, 448, 484
Hin6I	GCGC	2 cut(s)	5, 283
HinP1I	GCGC	2 cut(s)	5, 283
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HinfI	GANTC	4 cut(s)	59, 76, 109, 212
HpaII	CCGG	3 cut(s)	41, 152, 167
HphI	GGTGA	3 cut(s)	85, 268, 337
Hpy166II	GTNNAC	2 cut(s)	63, 259
Hpy188I	TCNGA	9 cut(s)	69, 88, 114, 162, 217, 241, 359, 477, 510
Hpy188III	TCNNGA	2 cut(s)	307, 338
Hpy8I	GTNNAC	2 cut(s)	63, 259
HpyAV	CCTTC	4 cut(s)	239, 381, 407, 463
HpyCH4IV	ACGT	1 cut(s)	425
HpyCH4V	TGCA	3 cut(s)	288, 297, 484
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 176, 289, 294
HpyF3I	CTNAG	2 cut(s)	85, 123
HpySE526I	ACGT	1 cut(s)	425
Hsp92I	GRCGYC	2 cut(s)	5, 90
Hsp92II	CATG	4 cut(s)	137, 265, 448, 484
HspAI	GCGC	2 cut(s)	5, 283
KasI	GGCGCC	1 cut(s)	4
KroI	GCCGGC	1 cut(s)	40
KroNI	GCCGGC	1 cut(s)	42
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	3 cut(s)	319, 472, 513
LguI	GCTCTTC	1 cut(s)	182
LmnI	GCTCC	3 cut(s)	114, 122, 217
Lsp1109I	GCAGC	2 cut(s)	107, 272
LweI	GCATC	1 cut(s)	363
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	1 cut(s)	425
MaeIII	GTNAC	2 cut(s)	73, 361
MalI	GATC	3 cut(s)	321, 474, 515
MboI	GATC	3 cut(s)	319, 472, 513
MboII	GAAGA	7 cut(s)	22, 196, 199, 208, 254, 277, 422
MflI	RGATCY	2 cut(s)	472, 513
MhlI	GDGCHC	2 cut(s)	53, 119
MlsI	TGGCCA	1 cut(s)	233
MluCI	AATT	3 cut(s)	298, 366, 504
MluNI	TGGCCA	1 cut(s)	233
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	68, 70, 103
Mox20I	TGGCCA	1 cut(s)	233
MroNI	GCCGGC	1 cut(s)	40
MscI	TGGCCA	1 cut(s)	233
MseI	TTAA	3 cut(s)	369, 378, 459
MslI	CAYNNNNRTG	1 cut(s)	359
Msp20I	TGGCCA	1 cut(s)	233
MspI	CCGG	3 cut(s)	41, 152, 167
MspR9I	CCNGG	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	4 cut(s)	89, 176, 289, 294
NaeI	GCCGGC	1 cut(s)	42
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	3 cut(s)	319, 472, 513
NgoMIV	GCCGGC	1 cut(s)	40
NlaIII	CATG	4 cut(s)	137, 265, 448, 484
NlaIV	GGNNCC	2 cut(s)	6, 156
NmeAIII	GCCGAG	2 cut(s)	79, 82
NmuCI	GTSAC	2 cut(s)	73, 361
NspI	RCATGY	1 cut(s)	484
PciSI	GCTCTTC	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PdiI	GCCGGC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	212
PinAI	ACCGGT	1 cut(s)	151
PkrI	GCNGC	5 cut(s)	94, 97, 105, 178, 287
PleI	GAGTC	3 cut(s)	67, 70, 103
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	3 cut(s)	67, 70, 103
PshBI	ATTAAT	1 cut(s)	369
Psp124BI	GAGCTC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	2 cut(s)	6, 156
PsuI	RGATCY	2 cut(s)	472, 513
RseI	CAYNNNNRTG	1 cut(s)	359
SacI	GAGCTC	1 cut(s)	119
SapI	GCTCTTC	1 cut(s)	182
SaqAI	TTAA	3 cut(s)	369, 378, 459
SatI	GCNGC	5 cut(s)	93, 96, 104, 177, 286
Sau3AI	GATC	3 cut(s)	319, 472, 513
SchI	GAGTC	3 cut(s)	68, 70, 103
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	2 cut(s)	53, 119
SetI	ASST	9 cut(s)	100, 119, 133, 231, 258, 327, 334, 418, 428
SfaNI	GCATC	1 cut(s)	363
SfoI	GGCGCC	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	359
Sse9I	AATT	3 cut(s)	298, 366, 504
SsiI	CCGC	4 cut(s)	54, 93, 103, 176
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	333
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	349
TaiI	ACGT	1 cut(s)	428
TasI	AATT	3 cut(s)	298, 366, 504
TauI	GCSGC	3 cut(s)	95, 106, 179
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	3 cut(s)	369, 378, 459
Tru9I	TTAA	3 cut(s)	369, 378, 459
TscAI	CASTG	1 cut(s)	471
TseFI	GTSAC	2 cut(s)	73, 361
TseI	GCWGC	2 cut(s)	95, 285
Tsp45I	GTSAC	2 cut(s)	73, 361
TspDTI	ATGAA	4 cut(s)	278, 291, 418, 461
TspRI	CASTG	1 cut(s)	471
VspI	ATTAAT	1 cut(s)	369
XceI	RCATGY	1 cut(s)	484
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.