Rmu_co8410623.1_g000001
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8410623.1
Physical Location & Seq
Reverse (-)
2 .. 1280
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8410623.1_g000001.1.cds

Sequence Viewer

Length: 1279 bp
atggcgacagggcaggttgatgttctgagaagaagggattctcctaaatactccaggagagaatttgggtattataagaatgggttctctggtgttaagctgagccatggctgcaatgatggtggcaaatttagagatgaagttcgcgattcgcgaagatggagagggcaatcaaatgcctcagaatcgttggttgagaccagaaaaactccggagaaggagaaggagaagaagaggaggttttctcctgttatatgggacagagaagagaagaaattagtaagggtatcatcgaagaatggagttgttccagtctcagttgtttcaagatcaccatcttgtgaggttcatgatgttgtctccgaaggagtcgacattgttcaattgcttcctgagatcaggaagaggaagtctccggttacaagtgacagggaagagaagagagtgaggatatcatcaaagaatagatttgtcccggtcactcctccatctagtgtgattgtttccgatggggttgtttcaaattctcctgcttcacagactcagtctcatggagtggagggttctgaagataaaccttctgtggcagatgggttggtggagatttctcaaatggaagcccctgctgatttgcaggttcggcggcattccgaggttccaaataacctggatgacaaagaccagactagaatctcattgtcaagatgggcatctgacattgactctccaagggatgatgttagctgcagctcgactcctgaaaatggcgaaatccgaagagaaggctcagttggggataggagcagagcttctagctctgtcagtggagatggtggagaagagattagtggacatgttggcaatgcgggcgttgatcagctgtatcctgattcagatgacgaaaatattgctcggattgaagagcctgcagtgcccaggggaagaagtgcaaacatgcttcagggttgcagaagtagtgaggagtactatactagtaatcaagaggcactgggtgaaggcacttatggtgtagtctacagagcgagagatgaacaaactggggaaattgtagccatgaagaaggtgaagatggataaccgcgatgaaggtttccctattacatcactgagagaaataaacattcttttgtcatgtaatcacccttccattgtgggtgtgaaggaagttgttgtggacaaggatggtgatattcttatggttatggagtatatggactatgagctcaagtttctaatggaatcgatggagcagcgattta

Protein Analysis

426

Amino Acids

47.51

Weight (kDa)

5.49

Isoelectric Point (pI)

66.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 75
Acc36I ACCTGC 2 cut(s) 4, 625
AccI GTMKAC 2 cut(s) 372, 1035
AccII CGCG 3 cut(s) 147, 154, 1101
AccIII TCCGGA 1 cut(s) 211
AciI CCGC 3 cut(s) 643, 866, 1099
AcsI RAATTY 3 cut(s) 62, 128, 523
AcuI CTGAAG 2 cut(s) 588, 944
AdeI CACNNNGTG 1 cut(s) 1013
AfaI GTAC 1 cut(s) 986
AfiI CCNNNNNNNGG 1 cut(s) 764
AflIII ACRYGT 1 cut(s) 853
AgsI TTSAA 4 cut(s) 327, 383, 522, 920
AhlI ACTAGT 1 cut(s) 992
AjnI CCWGG 3 cut(s) 53, 666, 935
AjuI GAANNNNNNNTTGG 2 cut(s) 774, 806
AluBI AGCT 7 cut(s) 100, 744, 750, 809, 816, 880, 1243
AluI AGCT 7 cut(s) 100, 744, 750, 809, 816, 880, 1243
Alw21I GWGCWC 1 cut(s) 1245
Alw26I GTCTC 5 cut(s) 191, 319, 364, 417, 552
Aor13HI TCCGGA 1 cut(s) 211
ApeKI GCWGC 4 cut(s) 111, 744, 747, 1270
ApoI RAATTY 3 cut(s) 62, 128, 523
Asp700I GAANNNNTTC 2 cut(s) 37, 83
AsuC2I CCSGG 1 cut(s) 476
AsuHPI GGTGA 5 cut(s) 324, 1025, 1096, 1151, 1217
BaeGI GKGCMC 1 cut(s) 936
BanII GRGCYC 1 cut(s) 1245
BarI GAAGNNNNNNTAC 2 cut(s) 1147, 1179
Bbv12I GWGCWC 1 cut(s) 1245
BbvI GCAGC 3 cut(s) 98, 731, 759
BcgI CGANNNNNNTGC 2 cut(s) 890, 924
BciT130I CCWGG 3 cut(s) 55, 668, 937
BciVI GTATCC 1 cut(s) 894
BclI TGATCA 1 cut(s) 874
BcnI CCSGG 1 cut(s) 476
BcoDI GTCTC 5 cut(s) 191, 319, 364, 417, 552
BcuI ACTAGT 1 cut(s) 992
BfaI CTAG 4 cut(s) 492, 687, 813, 993
BfmI CTRYAG 3 cut(s) 745, 927, 1036
BfuAI ACCTGC 2 cut(s) 4, 625
BfuI GTATCC 1 cut(s) 894
BisI GCNGC 5 cut(s) 112, 644, 745, 748, 1271
BlpI GCTNAGC 1 cut(s) 101
BlsI GCNGC 5 cut(s) 113, 645, 746, 749, 1272
BmcAI AGTACT 1 cut(s) 986
Bme1390I CCNGG 4 cut(s) 55, 476, 668, 937
BmiI GGNNCC 1 cut(s) 657
BmrFI CCNGG 4 cut(s) 55, 476, 668, 937
BmrI ACTGGG 2 cut(s) 1019, 1068
BmsI GCATC 1 cut(s) 719
BmuI ACTGGG 2 cut(s) 1019, 1068
BplI GAGNNNNNCTC 4 cut(s) 229, 261, 397, 429
BpmI CTGGAG 1 cut(s) 37
Bpu1102I GCTNAGC 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 1229
BpuMI CCSGG 1 cut(s) 476
Bsa29I ATCGAT 1 cut(s) 1262
BsaBI GATNNNNATC 2 cut(s) 334, 709
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 5 cut(s) 106, 651, 728, 935, 936
BsaWI WCCGGW 2 cut(s) 211, 415
Bsc4I CCNNNNNNNGG 1 cut(s) 764
Bse1I ACTGG 3 cut(s) 311, 1014, 1063
Bse3DI GCAATG 2 cut(s) 121, 868
Bse8I GATNNNNATC 2 cut(s) 334, 709
BseAI TCCGGA 1 cut(s) 211
BseBI CCWGG 3 cut(s) 55, 668, 937
BseCI ATCGAT 1 cut(s) 1262
BseDI CCNNGG 5 cut(s) 106, 651, 728, 935, 936
BseGI GGATG 3 cut(s) 676, 739, 1207
BseJI GATNNNNATC 2 cut(s) 334, 709
BseLI CCNNNNNNNGG 1 cut(s) 764
BseMI GCAATG 2 cut(s) 121, 868
BseMII CTCAG 8 cut(s) 17, 92, 195, 330, 384, 557, 801, 1118
BseNI ACTGG 3 cut(s) 311, 1014, 1063
BseRI GAGGAG 3 cut(s) 250, 474, 995
BseSI GKGCMC 1 cut(s) 936
BseXI GCAGC 3 cut(s) 98, 731, 759
Bsh1236I CGCG 3 cut(s) 147, 154, 1101
BshVI ATCGAT 1 cut(s) 1262
BsiHKAI GWGCWC 1 cut(s) 1245
BsiSI CCGG 3 cut(s) 212, 416, 476
BslFI GGGAC 2 cut(s) 272, 458
BslI CCNNNNNNNGG 1 cut(s) 764
BsmAI GTCTC 5 cut(s) 191, 319, 364, 417, 552
BsmFI GGGAC 2 cut(s) 272, 458
BsmI GAATGC 1 cut(s) 646
Bso31I GGTCTC 1 cut(s) 191
Bsp1286I GDGCHC 2 cut(s) 936, 1245
Bsp13I TCCGGA 1 cut(s) 211
Bsp143I GATC 3 cut(s) 329, 396, 874
Bsp1720I GCTNAGC 1 cut(s) 101
Bsp19I CCATGG 1 cut(s) 106
Bsp68I TCGCGA 2 cut(s) 147, 154
BspACI CCGC 3 cut(s) 643, 866, 1099
BspCNI CTCAG 8 cut(s) 18, 93, 194, 329, 385, 556, 800, 1119
BspDI ATCGAT 1 cut(s) 1262
BspEI TCCGGA 1 cut(s) 211
BspFNI CGCG 3 cut(s) 147, 154, 1101
BspHI TCATGA 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 657
BspMAI CTGCAG 2 cut(s) 749, 931
BspMI ACCTGC 2 cut(s) 4, 625
BspQI GCTCTTC 1 cut(s) 915
BspTNI GGTCTC 1 cut(s) 191
BsrDI GCAATG 2 cut(s) 121, 868
BsrI ACTGG 3 cut(s) 311, 1014, 1063
BssECI CCNNGG 5 cut(s) 106, 651, 728, 935, 936
BssMI GATC 3 cut(s) 329, 396, 874
BssT1I CCWWGG 2 cut(s) 106, 728
Bst2UI CCWGG 3 cut(s) 55, 668, 937
Bst6I CTCTTC 8 cut(s) 227, 261, 398, 429, 434, 772, 834, 915
BstC8I GCNNGC 2 cut(s) 868, 927
BstDEI CTNAG 8 cut(s) 26, 101, 181, 316, 393, 543, 787, 1127
BstDSI CCRYGG 1 cut(s) 106
BstF5I GGATG 3 cut(s) 676, 739, 1207
BstFNI CGCG 3 cut(s) 147, 154, 1101
BstKTI GATC 3 cut(s) 332, 399, 877
BstMAI GTCTC 5 cut(s) 191, 319, 364, 417, 552
BstMBI GATC 3 cut(s) 329, 396, 874
BstMWI GCNNNNNNNGC 4 cut(s) 111, 640, 867, 931
BstNI CCWGG 3 cut(s) 55, 668, 937
BstNSI RCATGY 2 cut(s) 857, 958
BstSCI CCNGG 4 cut(s) 53, 474, 666, 935
BstSFI CTRYAG 3 cut(s) 745, 927, 1036
BstSLI GKGCMC 1 cut(s) 936
BstUI CGCG 3 cut(s) 147, 154, 1101
BstV1I GCAGC 3 cut(s) 98, 731, 759
Bsu15I ATCGAT 1 cut(s) 1262
BsuI GTATCC 1 cut(s) 894
BsuTUI ATCGAT 1 cut(s) 1262
BtgI CCRYGG 1 cut(s) 106
BtgZI GCGATG 1 cut(s) 1116
BtsCI GGATG 3 cut(s) 676, 739, 1207
BtsI GCAGTG 1 cut(s) 936
BtsIMutI CAGTG 4 cut(s) 829, 936, 1007, 1124
BtuMI TCGCGA 2 cut(s) 147, 154
BveI ACCTGC 2 cut(s) 4, 625
Cac8I GCNNGC 2 cut(s) 868, 927
CciI TCATGA 1 cut(s) 349
ClaI ATCGAT 1 cut(s) 1262
Csp6I GTAC 1 cut(s) 985
CspCI CAANNNNNGTGG 2 cut(s) 103, 138
CviAII CATG 7 cut(s) 107, 350, 551, 854, 955, 1075, 1152
CviQI GTAC 1 cut(s) 985
DdeI CTNAG 8 cut(s) 26, 101, 181, 316, 393, 543, 787, 1127
DpnI GATC 3 cut(s) 331, 398, 876
DpnII GATC 3 cut(s) 329, 396, 874
DraIII CACNNNGTG 1 cut(s) 1013
Eam1104I CTCTTC 8 cut(s) 227, 261, 398, 429, 434, 772, 834, 915
EarI CTCTTC 8 cut(s) 227, 261, 398, 429, 434, 772, 834, 915
Ecl136II GAGCTC 1 cut(s) 1243
Eco130I CCWWGG 2 cut(s) 106, 728
Eco24I GRGCYC 1 cut(s) 1245
Eco31I GGTCTC 1 cut(s) 191
Eco32I GATATC 1 cut(s) 453
Eco53kI GAGCTC 1 cut(s) 1243
Eco57I CTGAAG 2 cut(s) 588, 944
EcoICRI GAGCTC 1 cut(s) 1243
EcoRII CCWGG 3 cut(s) 53, 666, 935
EcoRV GATATC 1 cut(s) 453
EcoT14I CCWWGG 2 cut(s) 106, 728
EcoT38I GRGCYC 1 cut(s) 1245
ErhI CCWWGG 2 cut(s) 106, 728
FaeI CATG 7 cut(s) 110, 353, 554, 857, 958, 1078, 1155
FaqI GGGAC 2 cut(s) 272, 458
FatI CATG 7 cut(s) 106, 349, 550, 853, 954, 1074, 1151
FauI CCCGC 1 cut(s) 859
FbaI TGATCA 1 cut(s) 874
FblI GTMKAC 2 cut(s) 372, 1035
Fnu4HI GCNGC 5 cut(s) 112, 644, 745, 748, 1271
FokI GGATG 3 cut(s) 683, 746, 1214
FriOI GRGCYC 1 cut(s) 1245
Fsp4HI GCNGC 5 cut(s) 112, 644, 745, 748, 1271
FspBI CTAG 4 cut(s) 492, 687, 813, 993
GluI GCNGC 5 cut(s) 112, 644, 745, 748, 1271
GsuI CTGGAG 1 cut(s) 37
HapII CCGG 3 cut(s) 212, 416, 476
Hin1II CATG 7 cut(s) 110, 353, 554, 857, 958, 1078, 1155
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HpaII CCGG 3 cut(s) 212, 416, 476
HphI GGTGA 5 cut(s) 324, 1025, 1096, 1151, 1217
Hpy166II GTNNAC 4 cut(s) 373, 851, 1036, 1195
Hpy8I GTNNAC 4 cut(s) 373, 851, 1036, 1195
HpyCH4V TGCA 6 cut(s) 114, 634, 747, 929, 950, 969
HpyF10VI GCNNNNNNNGC 4 cut(s) 111, 640, 867, 931
HpyF3I CTNAG 8 cut(s) 26, 101, 181, 316, 393, 543, 787, 1127
Hsp92II CATG 7 cut(s) 110, 353, 554, 857, 958, 1078, 1155
Kpn2I TCCGGA 1 cut(s) 211
Ksp22I TGATCA 1 cut(s) 874
Kzo9I GATC 3 cut(s) 329, 396, 874
LguI GCTCTTC 1 cut(s) 915
LmnI GCTCC 2 cut(s) 801, 1267
Lsp1109I GCAGC 3 cut(s) 98, 731, 759
LweI GCATC 1 cut(s) 719
MaeI CTAG 4 cut(s) 492, 687, 813, 993
MaeIII GTNAC 3 cut(s) 418, 425, 478
MalI GATC 3 cut(s) 331, 398, 876
MboI GATC 3 cut(s) 329, 396, 874
MfeI CAATTG 1 cut(s) 383
MhlI GDGCHC 2 cut(s) 936, 1245
MluCI AATT 6 cut(s) 62, 128, 275, 383, 523, 1065
MlyI GAGTC 4 cut(s) 378, 535, 716, 748
MroI TCCGGA 1 cut(s) 211
MroXI GAANNNNTTC 2 cut(s) 37, 83
MseI TTAA 1 cut(s) 96
MspA1I CMGCKG 1 cut(s) 880
MspI CCGG 3 cut(s) 212, 416, 476
MspR9I CCNGG 4 cut(s) 55, 476, 668, 937
MunI CAATTG 1 cut(s) 383
Mva1269I GAATGC 1 cut(s) 646
MvaI CCWGG 3 cut(s) 55, 668, 937
MvnI CGCG 3 cut(s) 147, 154, 1101
MwoI GCNNNNNNNGC 4 cut(s) 111, 640, 867, 931
NciI CCSGG 1 cut(s) 476
NcoI CCATGG 1 cut(s) 106
NdeII GATC 3 cut(s) 329, 396, 874
NlaIII CATG 7 cut(s) 110, 353, 554, 857, 958, 1078, 1155
NlaIV GGNNCC 1 cut(s) 657
NmuCI GTSAC 2 cut(s) 425, 478
NruI TCGCGA 2 cut(s) 147, 154
NspI RCATGY 2 cut(s) 857, 958
PagI TCATGA 1 cut(s) 349
PasI CCCWGGG 1 cut(s) 936
PciI ACATGT 1 cut(s) 853
PciSI GCTCTTC 1 cut(s) 915
PcsI WCGNNNNNNNCGW 1 cut(s) 151
PctI GAATGC 1 cut(s) 646
PdmI GAANNNNTTC 2 cut(s) 37, 83
PfeI GAWTC 6 cut(s) 38, 149, 185, 690, 890, 1259
PflFI GACNNNGTC 1 cut(s) 544
PfoI TCCNGGA 1 cut(s) 53
PkrI GCNGC 5 cut(s) 113, 645, 746, 749, 1272
PleI GAGTC 4 cut(s) 377, 535, 716, 748
PpsI GAGTC 4 cut(s) 377, 535, 716, 748
PscI ACATGT 1 cut(s) 853
PsiI TTATAA 1 cut(s) 75
Psp124BI GAGCTC 1 cut(s) 1245
Psp6I CCWGG 3 cut(s) 53, 666, 935
PspGI CCWGG 3 cut(s) 53, 666, 935
PspN4I GGNNCC 1 cut(s) 657
PstI CTGCAG 2 cut(s) 749, 931
PsyI GACNNNGTC 1 cut(s) 544
PvuII CAGCTG 1 cut(s) 880
RruI TCGCGA 2 cut(s) 147, 154
RsaI GTAC 1 cut(s) 986
RsaNI GTAC 1 cut(s) 985
SacI GAGCTC 1 cut(s) 1245
SalI GTCGAC 1 cut(s) 371
SapI GCTCTTC 1 cut(s) 915
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 5 cut(s) 112, 644, 745, 748, 1271
Sau3AI GATC 3 cut(s) 329, 396, 874
ScaI AGTACT 1 cut(s) 986
SchI GAGTC 4 cut(s) 378, 535, 716, 748
ScrFI CCNGG 4 cut(s) 55, 476, 668, 937
SduI GDGCHC 2 cut(s) 936, 1245
SfaNI GCATC 1 cut(s) 719
SfcI CTRYAG 3 cut(s) 745, 927, 1036
SmlI CTYRAG 1 cut(s) 1244
SmoI CTYRAG 1 cut(s) 1244
SpeI ACTAGT 1 cut(s) 992
Sse9I AATT 6 cut(s) 62, 128, 275, 383, 523, 1065
SsiI CCGC 3 cut(s) 643, 866, 1099
SspI AATATT 1 cut(s) 907
SspMI CTAG 4 cut(s) 492, 687, 813, 993
SstI GAGCTC 1 cut(s) 1245
StyD4I CCNGG 4 cut(s) 53, 474, 666, 935
StyI CCWWGG 2 cut(s) 106, 728
TaqI TCGA 4 cut(s) 293, 372, 752, 1262
TasI AATT 6 cut(s) 62, 128, 275, 383, 523, 1065
TatI WGTACW 1 cut(s) 984
TauI GCSGC 1 cut(s) 646
TfiI GAWTC 6 cut(s) 38, 149, 185, 690, 890, 1259
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 4 cut(s) 829, 936, 1014, 1131
TseFI GTSAC 2 cut(s) 425, 478
TseI GCWGC 4 cut(s) 111, 744, 747, 1270
Tsp45I GTSAC 2 cut(s) 425, 478
TspDTI ATGAA 5 cut(s) 153, 338, 1065, 1091, 1119
TspRI CASTG 4 cut(s) 829, 936, 1014, 1131
Tth111I GACNNNGTC 1 cut(s) 544
XapI RAATTY 3 cut(s) 62, 128, 523
XceI RCATGY 2 cut(s) 857, 958
XmiI GTMKAC 2 cut(s) 372, 1035
XmnI GAANNNNTTC 2 cut(s) 37, 83
XspI CTAG 4 cut(s) 492, 687, 813, 993
ZrmI AGTACT 1 cut(s) 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.