MD06G1147400.v1.1

Serine/Threonine protein kinases, catalytic domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
28959223 .. 28960797
1575 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1147400.v1.1.491

Sequence Viewer

Length: 1455 bp
ATGTTTGTTTTGTCTGTGCACAAACAAACACTATATCCAAAAAGAAAAGAACAAAAATCCAGAAACAGTGACTTAAATTTTAGAAACAAGGAAGACAAAGAATTTTTCTATCAACGTGACATCTCATTGTCAAAATGGTCATCCGGTAGTGATTCCCCAAGGGATATCTCTGATGACAGTTCGCCTGAAAGTGGGGAGATTCGGATAGAAAGCTCTAGGTTGAGTCGGGCTAGAACTTCTGGCTCTGACATAGAAGGCAGCTTTGAAAAGCCTGGCAGTGGAGATGCACTTTATGGAGACGAGTTATGTGATGATGCGCATATGGATGCTGATAATTATGGTGGGAATGCTGACGATAGCCAGTTCTACTCTGATTCTGAGGATGATTCTGATCTTTCTCAGATTGAAGAGCCAGAAGTGCCGACACAAAAATGTATAAACATGCTTCAAGGTTGCAGAAGTGTGTTTGAGTATGAAAGGCTCAACCATATAAGTGAAGGCACTTATGGTGTTGTCTTTAGAGCCAGAGATAAAAAGACCGGAGAAATTGTCGCATTGAAGAAGATGAAGATGGATGTGGATAAGGGATGTGATGGTTTCCCTATGTCGGCATTGAGAGAAATAAATATTCTCCTGTCCTTTAATCACCCTTCTGTTGTTGGTGTTAAGGAAGTTGTTATGGATGACTTTGATGGTGTTTATATGGTTATGGAGCATATGGACCATGACTTGAAGGGGCTAATGGAGTCAATGAAGCAGCCATTTAGTATTGGCGAAGTTAAGTACTTGATGAAACAACGTTTGGAGGGTGTAGAGTATCTTCATGACAATTGGATCCTTCACAGAGATCTGAAAACATCAAATATTCTATTGAATAACGAGGGTGAGTTGAAAATATGCGACTTTGAGTTGTCACGACAATATGGGAGTCCACTAAAGCCATATACTTCTTTAGTTGTCACTTTGTGGTACCGGGCACCTGAAATTCTATTAGGTGCAAAACAGTACTCTACAGCAATTGATATGTGGTCAGTAGGTTGCATAATGGCTGAATTGTTGGCGAAGGCACCTCTCTTTAGCGGGAAAGATGAAATTGAGCAGCTGGACAAGATCTTCAAAACTCTTGGTACACCAGATGAGAAAAGTGGTTTGTCCAAATTGCCGGGCTTCAAAGCTAATTTTGTTAAGCAACCGTACAATCTTCTGCGCAAGAAATTTCCTGCCGCATCTTTCACTGGATCATGCCCAGTGCTCTCTGAATCTGGGTTTGATTTGTTGAAGAGGCTCTTATGTTATAACCCTGCGGAGCGAATAACAGCGAAGGATGCCCTCAACCATACCTGGTTTCACGAGTCCCCTGAACCAAGAAGGGATTTCAAGCCAATTACTCCTGATCGACATGTTCACGACCGGCACCTTAACAGCAGGCGGCGTGAGAAAATTTTACAGCAATAA

Protein Analysis

485

Amino Acids

55.27

Weight (kDa)

5.65

Isoelectric Point (pI)

51.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 158 - 449 1.1e-69 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 161 - 355 4.1e-30 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1296
Acc16I TGCGCA 2 cut(s) 318, 1208
Acc65I GGTACC 1 cut(s) 969
AccB1I GGYRCC 4 cut(s) 969, 976, 1066, 1413
AciI CCGC 4 cut(s) 1080, 1224, 1304, 1429
AclI AACGTT 1 cut(s) 799
AclWI GGATC 3 cut(s) 829, 842, 1246
AcsI RAATTY 5 cut(s) 76, 101, 984, 1214, 1440
AdeI CACNNNGTG 1 cut(s) 966
AfaI GTAC 5 cut(s) 785, 971, 1007, 1129, 1196
AfiI CCNNNNNNNGG 3 cut(s) 191, 278, 607
AflIII ACRYGT 1 cut(s) 1399
AjnI CCWGG 2 cut(s) 271, 1340
AjuI GAANNNNNNNTTGG 2 cut(s) 785, 817
AluBI AGCT 4 cut(s) 213, 261, 1102, 1175
AluI AGCT 4 cut(s) 213, 261, 1102, 1175
Alw21I GWGCWC 2 cut(s) 21, 1254
Alw26I GTCTC 1 cut(s) 291
Alw44I GTGCAC 1 cut(s) 17
AlwI GGATC 3 cut(s) 829, 842, 1246
ApaLI GTGCAC 1 cut(s) 17
ApeKI GCWGC 3 cut(s) 258, 757, 1099
ApoI RAATTY 5 cut(s) 76, 101, 984, 1214, 1440
Asp718I GGTACC 1 cut(s) 969
AspLEI GCGC 2 cut(s) 319, 1209
AspS9I GGNCC 1 cut(s) 721
AsuC2I CCSGG 2 cut(s) 974, 1164
AsuHPI GGTGA 2 cut(s) 638, 896
AvaII GGWCC 1 cut(s) 721
BaeGI GKGCMC 2 cut(s) 21, 979
BamHI GGATCC 1 cut(s) 834
BanI GGYRCC 4 cut(s) 969, 976, 1066, 1413
BarI GAAGNNNNNNTAC 2 cut(s) 804, 836
BauI CACGAG 1 cut(s) 1349
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 2 cut(s) 21, 1254
BbvI GCAGC 3 cut(s) 270, 769, 1111
BccI CCATC 3 cut(s) 565, 587, 686
BciT130I CCWGG 2 cut(s) 273, 1342
BcnI CCSGG 2 cut(s) 974, 1164
BcoDI GTCTC 1 cut(s) 291
BfaI CTAG 2 cut(s) 216, 231
BfmI CTRYAG 1 cut(s) 1011
BglII AGATCT 2 cut(s) 847, 1110
BisI GCNGC 5 cut(s) 259, 758, 1100, 1224, 1430
BlsI GCNGC 5 cut(s) 260, 759, 1101, 1225, 1431
BmcAI AGTACT 2 cut(s) 785, 1007
Bme1390I CCNGG 4 cut(s) 273, 974, 1164, 1342
Bme18I GGWCC 1 cut(s) 721
BmgT120I GGNCC 1 cut(s) 721
BmiI GGNNCC 5 cut(s) 836, 971, 978, 1068, 1415
BmrFI CCNGG 4 cut(s) 273, 974, 1164, 1342
BmrI ACTGGG 1 cut(s) 1241
BmsI GCATC 5 cut(s) 274, 304, 316, 1235, 1315
BmuI ACTGGG 1 cut(s) 1241
BpiI GAAGAC 1 cut(s) 99
BpuMI CCSGG 2 cut(s) 974, 1164
BsaBI GATNNNNATC 1 cut(s) 390
BsaJI CCNNGG 1 cut(s) 158
BsaWI WCCGGW 2 cut(s) 143, 539
BsaXI ACNNNNNCTCC 2 cut(s) 534, 564
Bsc4I CCNNNNNNNGG 3 cut(s) 191, 278, 607
Bse118I RCCGGY 1 cut(s) 1410
Bse1I ACTGG 3 cut(s) 361, 1240, 1247
Bse8I GATNNNNATC 1 cut(s) 390
BseBI CCWGG 2 cut(s) 273, 1342
BseDI CCNNGG 1 cut(s) 158
BseGI GGATG 7 cut(s) 140, 331, 388, 580, 593, 688, 1330
BseJI GATNNNNATC 1 cut(s) 390
BseLI CCNNNNNNNGG 3 cut(s) 191, 278, 607
BseMII CTCAG 2 cut(s) 369, 413
BseNI ACTGG 3 cut(s) 361, 1240, 1247
BseSI GKGCMC 2 cut(s) 21, 979
BseXI GCAGC 3 cut(s) 270, 769, 1111
Bsh1285I CGRYCG 1 cut(s) 1411
BshNI GGYRCC 4 cut(s) 969, 976, 1066, 1413
BsiEI CGRYCG 1 cut(s) 1411
BsiHKAI GWGCWC 2 cut(s) 21, 1254
BsiSI CCGG 5 cut(s) 144, 540, 973, 1163, 1411
BslFI GGGAC 1 cut(s) 1339
BslI CCNNNNNNNGG 3 cut(s) 191, 278, 607
BsmAI GTCTC 1 cut(s) 291
BsmBI CGTCTC 1 cut(s) 291
BsmFI GGGAC 1 cut(s) 1339
BsmI GAATGC 1 cut(s) 352
Bsp1286I GDGCHC 3 cut(s) 21, 979, 1254
Bsp143I GATC 6 cut(s) 391, 834, 847, 1110, 1238, 1393
BspACI CCGC 4 cut(s) 1080, 1224, 1304, 1429
BspCNI CTCAG 2 cut(s) 370, 412
BspHI TCATGA 1 cut(s) 823
BspLI GGNNCC 5 cut(s) 836, 971, 978, 1068, 1415
BspPI GGATC 3 cut(s) 829, 842, 1246
BspQI GCTCTTC 1 cut(s) 402
BspT107I GGYRCC 4 cut(s) 969, 976, 1066, 1413
BsrFI RCCGGY 1 cut(s) 1410
BsrI ACTGG 3 cut(s) 361, 1240, 1247
BssAI RCCGGY 1 cut(s) 1410
BssECI CCNNGG 1 cut(s) 158
BssMI GATC 6 cut(s) 391, 834, 847, 1110, 1238, 1393
BssSI CACGAG 1 cut(s) 1349
BssT1I CCWWGG 1 cut(s) 158
Bst2BI CACGAG 1 cut(s) 1349
Bst2UI CCWGG 2 cut(s) 273, 1342
Bst4CI ACNGT 4 cut(s) 68, 179, 1005, 1194
Bst6I CTCTTC 2 cut(s) 402, 1274
BstC8I GCNNGC 1 cut(s) 1427
BstDEI CTNAG 2 cut(s) 378, 399
BstF5I GGATG 7 cut(s) 140, 331, 388, 580, 593, 688, 1330
BstHHI GCGC 2 cut(s) 319, 1209
BstKTI GATC 6 cut(s) 394, 837, 850, 1113, 1241, 1396
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 6 cut(s) 391, 834, 847, 1110, 1238, 1393
BstMCI CGRYCG 1 cut(s) 1411
BstMWI GCNNNNNNNGC 2 cut(s) 418, 1325
BstNI CCWGG 2 cut(s) 273, 1342
BstNSI RCATGY 2 cut(s) 445, 1403
BstSCI CCNGG 4 cut(s) 271, 972, 1162, 1340
BstSFI CTRYAG 1 cut(s) 1011
BstSLI GKGCMC 2 cut(s) 21, 979
BstV1I GCAGC 3 cut(s) 270, 769, 1111
BstV2I GAAGAC 1 cut(s) 99
BstX2I RGATCY 3 cut(s) 834, 847, 1110
BstYI RGATCY 3 cut(s) 834, 847, 1110
BtsCI GGATG 7 cut(s) 140, 331, 388, 580, 593, 688, 1330
BtsI GCAGTG 1 cut(s) 283
BtsIMutI CAGTG 4 cut(s) 73, 283, 1233, 1254
Cac8I GCNNGC 1 cut(s) 1427
CciI TCATGA 1 cut(s) 823
CfoI GCGC 2 cut(s) 319, 1209
Cfr10I RCCGGY 1 cut(s) 1410
Cfr13I GGNCC 1 cut(s) 721
CsiI ACCWGGT 1 cut(s) 1340
Csp6I GTAC 5 cut(s) 784, 970, 1006, 1128, 1195
CviAII CATG 5 cut(s) 442, 725, 824, 1242, 1400
CviQI GTAC 5 cut(s) 784, 970, 1006, 1128, 1195
DdeI CTNAG 2 cut(s) 378, 399
DpnI GATC 6 cut(s) 393, 836, 849, 1112, 1240, 1395
DpnII GATC 6 cut(s) 391, 834, 847, 1110, 1238, 1393
DraIII CACNNNGTG 1 cut(s) 966
Eam1104I CTCTTC 2 cut(s) 402, 1274
EarI CTCTTC 2 cut(s) 402, 1274
Eco130I CCWWGG 1 cut(s) 158
Eco32I GATATC 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 721
EcoRII CCWGG 2 cut(s) 271, 1340
EcoRV GATATC 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 158
Esp3I CGTCTC 1 cut(s) 291
FaeI CATG 5 cut(s) 445, 728, 827, 1245, 1403
FalI AAGNNNNNCTT 2 cut(s) 1271, 1303
FaqI GGGAC 1 cut(s) 1339
FatI CATG 5 cut(s) 441, 724, 823, 1241, 1399
FauI CCCGC 1 cut(s) 1073
FauNDI CATATG 2 cut(s) 321, 717
Fnu4HI GCNGC 5 cut(s) 259, 758, 1100, 1224, 1430
FokI GGATG 7 cut(s) 127, 338, 395, 587, 600, 695, 1337
Fsp4HI GCNGC 5 cut(s) 259, 758, 1100, 1224, 1430
FspAI RTGCGCAY 1 cut(s) 318
FspBI CTAG 2 cut(s) 216, 231
FspI TGCGCA 2 cut(s) 318, 1208
GlaI GCGC 2 cut(s) 318, 1208
GluI GCNGC 5 cut(s) 259, 758, 1100, 1224, 1430
HapII CCGG 5 cut(s) 144, 540, 973, 1163, 1411
HhaI GCGC 2 cut(s) 319, 1209
Hin1II CATG 5 cut(s) 445, 728, 827, 1245, 1403
Hin6I GCGC 2 cut(s) 317, 1207
HinP1I GCGC 2 cut(s) 317, 1207
HinfI GANTC 9 cut(s) 152, 199, 223, 374, 386, 746, 928, 1259, 1352
HpaII CCGG 5 cut(s) 144, 540, 973, 1163, 1411
HphI GGTGA 2 cut(s) 638, 896
Hpy166II GTNNAC 4 cut(s) 19, 932, 1130, 1405
Hpy188I TCNGA 9 cut(s) 172, 204, 247, 373, 379, 391, 402, 852, 1258
Hpy188III TCNNGA 6 cut(s) 60, 824, 915, 1349, 1391, 1406
Hpy8I GTNNAC 4 cut(s) 19, 932, 1130, 1405
HpyAV CCTTC 8 cut(s) 248, 491, 660, 727, 848, 1057, 1315, 1362
HpyCH4III ACNGT 4 cut(s) 68, 179, 1005, 1194
HpyCH4IV ACGT 2 cut(s) 115, 799
HpyCH4V TGCA 5 cut(s) 19, 287, 456, 998, 1041
HpyF10VI GCNNNNNNNGC 2 cut(s) 418, 1325
HpyF3I CTNAG 2 cut(s) 378, 399
HpySE526I ACGT 2 cut(s) 115, 799
Hsp92II CATG 5 cut(s) 445, 728, 827, 1245, 1403
HspAI GCGC 2 cut(s) 317, 1207
KpnI GGTACC 1 cut(s) 973
Kzo9I GATC 6 cut(s) 391, 834, 847, 1110, 1238, 1393
LguI GCTCTTC 1 cut(s) 402
LmnI GCTCC 2 cut(s) 712, 1306
Lsp1109I GCAGC 3 cut(s) 270, 769, 1111
LweI GCATC 5 cut(s) 274, 304, 316, 1235, 1315
MabI ACCWGGT 1 cut(s) 1340
MaeI CTAG 2 cut(s) 216, 231
MaeII ACGT 2 cut(s) 115, 799
MaeIII GTNAC 4 cut(s) 68, 116, 912, 958
MalI GATC 6 cut(s) 393, 836, 849, 1112, 1240, 1395
MboI GATC 6 cut(s) 391, 834, 847, 1110, 1238, 1393
MboII GAAGA 9 cut(s) 104, 419, 571, 574, 580, 812, 1105, 1193, 1291
MfeI CAATTG 2 cut(s) 829, 1017
MflI RGATCY 3 cut(s) 834, 847, 1110
MhlI GDGCHC 3 cut(s) 21, 979, 1254
MlyI GAGTC 4 cut(s) 232, 755, 937, 1361
MnlI CCTC 6 cut(s) 373, 799, 874, 1080, 1275, 1340
MseI TTAA 6 cut(s) 74, 642, 666, 780, 1185, 1419
MslI CAYNNNNRTG 3 cut(s) 324, 430, 492
MspA1I CMGCKG 1 cut(s) 1102
MspI CCGG 5 cut(s) 144, 540, 973, 1163, 1411
MspR9I CCNGG 4 cut(s) 273, 974, 1164, 1342
MunI CAATTG 2 cut(s) 829, 1017
Mva1269I GAATGC 1 cut(s) 352
MvaI CCWGG 2 cut(s) 273, 1342
MwoI GCNNNNNNNGC 2 cut(s) 418, 1325
NciI CCSGG 2 cut(s) 974, 1164
NdeI CATATG 2 cut(s) 321, 717
NdeII GATC 6 cut(s) 391, 834, 847, 1110, 1238, 1393
NlaIII CATG 5 cut(s) 445, 728, 827, 1245, 1403
NlaIV GGNNCC 5 cut(s) 836, 971, 978, 1068, 1415
NmuCI GTSAC 4 cut(s) 68, 116, 912, 958
NsbI TGCGCA 2 cut(s) 318, 1208
NspI RCATGY 2 cut(s) 445, 1403
PagI TCATGA 1 cut(s) 823
PciI ACATGT 1 cut(s) 1399
PciSI GCTCTTC 1 cut(s) 402
PctI GAATGC 1 cut(s) 352
PfeI GAWTC 5 cut(s) 152, 199, 374, 386, 1259
PkrI GCNGC 5 cut(s) 260, 759, 1101, 1225, 1431
PleI GAGTC 4 cut(s) 231, 754, 936, 1360
PpsI GAGTC 4 cut(s) 231, 754, 936, 1360
PscI ACATGT 1 cut(s) 1399
PsiI TTATAA 1 cut(s) 1296
Psp1406I AACGTT 1 cut(s) 799
Psp6I CCWGG 2 cut(s) 271, 1340
PspGI CCWGG 2 cut(s) 271, 1340
PspN4I GGNNCC 5 cut(s) 836, 971, 978, 1068, 1415
PspPI GGNCC 1 cut(s) 721
PsuI RGATCY 3 cut(s) 834, 847, 1110
PvuII CAGCTG 1 cut(s) 1102
RsaI GTAC 5 cut(s) 785, 971, 1007, 1129, 1196
RsaNI GTAC 5 cut(s) 784, 970, 1006, 1128, 1195
RseI CAYNNNNRTG 3 cut(s) 324, 430, 492
SapI GCTCTTC 1 cut(s) 402
SaqAI TTAA 6 cut(s) 74, 642, 666, 780, 1185, 1419
SatI GCNGC 5 cut(s) 259, 758, 1100, 1224, 1430
Sau3AI GATC 6 cut(s) 391, 834, 847, 1110, 1238, 1393
Sau96I GGNCC 1 cut(s) 721
ScaI AGTACT 2 cut(s) 785, 1007
SchI GAGTC 4 cut(s) 232, 755, 937, 1361
ScrFI CCNGG 4 cut(s) 273, 974, 1164, 1342
SduI GDGCHC 3 cut(s) 21, 979, 1254
SexAI ACCWGGT 1 cut(s) 1340
SfaNI GCATC 5 cut(s) 274, 304, 316, 1235, 1315
SfcI CTRYAG 1 cut(s) 1011
SinI GGWCC 1 cut(s) 721
SmiMI CAYNNNNRTG 3 cut(s) 324, 430, 492
SsiI CCGC 4 cut(s) 1080, 1224, 1304, 1429
SspI AATATT 2 cut(s) 628, 865
SspMI CTAG 2 cut(s) 216, 231
StyD4I CCNGG 4 cut(s) 271, 972, 1162, 1340
StyI CCWWGG 1 cut(s) 158
TaaI ACNGT 4 cut(s) 68, 179, 1005, 1194
TaiI ACGT 2 cut(s) 118, 802
TaqI TCGA 1 cut(s) 1396
TatI WGTACW 2 cut(s) 783, 1005
TauI GCSGC 2 cut(s) 1226, 1432
TfiI GAWTC 5 cut(s) 152, 199, 374, 386, 1259
Tru1I TTAA 6 cut(s) 74, 642, 666, 780, 1185, 1419
Tru9I TTAA 6 cut(s) 74, 642, 666, 780, 1185, 1419
TscAI CASTG 4 cut(s) 73, 283, 1240, 1254
TseFI GTSAC 4 cut(s) 68, 116, 912, 958
TseI GCWGC 3 cut(s) 258, 757, 1099
Tsp45I GTSAC 4 cut(s) 68, 116, 912, 958
TspDTI ATGAA 6 cut(s) 489, 581, 767, 806, 812, 1104
TspRI CASTG 4 cut(s) 73, 283, 1240, 1254
VneI GTGCAC 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 721
XapI RAATTY 5 cut(s) 76, 101, 984, 1214, 1440
XceI RCATGY 2 cut(s) 445, 1403
XspI CTAG 2 cut(s) 216, 231
ZrmI AGTACT 2 cut(s) 785, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.