Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035585.1

Orthogroup ID

OG0005997

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1124

Gene Structure 1124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035585.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 962 bp

tcccacctcggatttctgcaatggtgaagcttcaaactcttgtaatggataacaacttcttgaatggcactgttcccaattggtttggctcactatccaatctttcaactctaagctttagaaacaaccagttgaaaggtccattacttgatctcagtagcttaggtagcttacaagtgcttgatttgagcgtgaacaagttgaatgctgtattgccctcaatgccaaaacggttggtcgtgcttgccctcagcaacaattccttctctggtgagattcctcagcaatatcggagactaagcgcgcttcaacaccttgacatgtcattcaactcacttacaggcacacctcttgctgcattgttctcattgccaaatatcaactacttgaatttggcttcgaatttgttaagtggttcgcttccgagccatttaagctgtgtcattaaacttgattacattgatatatcgaacaatagattgacaggtgacttgccttcttgtttgggaactaaatcaggacagagagttgttaagtttggtgggaattgcttatctgttagtacgaaaaatcagcatccacagtcatactgcaatgtagtagtcagtccaaaggagagacaaactggaggaaaagaagtaggaatcttggtgggtgtgatggttggaatacttgtgcttttagtgcttctggttttgagctgtatcattttgtgtagaagatatctccctcggggagtgccggagcagcatttgctgcataagccagagcaagatcacccagtagcagtagggttctccaccgagatgctaacaaatgcaaggtttatttcacaagcagccaaggcaggcatgctaggtctcccaggatgccgaactttttcattagaggagttggcggacattaccagaaattttgacaactctgcctttttgggtgaaggttcatacgggaaggtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

319

Amino Acids

34.56

Weight (kDa)

9.22

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63410
fragaria_vesca	FvH4_5g07890 FvH4_5g07890 FvH4_5g07890 FvH4_5g07890 FvH4_5g07890 FvH4_5g07890
malus_domestica	MD06G1145000.v1.1 MD14G1159600.v1.1
prunus_persica	Prupe.5G153400_v2.0.a1 Prupe.5G153400_v2.0.a1 Prupe.5G153400_v2.0.a1 Prupe.5G153400_v2.0.a1
pyrus_communis	pycom06g13430 pycom14g13330
rosa_chinensis	RchiOBHm_Chr7g0190561
rosa_laevigata	RLG00000004515
rosa_multiflora	Rmu_sc0000526.1_g000001 Rmu_sc0035585.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264510
rosa_rugosa	Rorug06G0505200 Rorug06G0505300
rosa_samantha	Rh7AG111800 Rh7BG114600 Rh7CG116500 Rh7DG115700
rosa_wichuraiana	Rw7G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	304
AciI	CCGC	1 cut(s)	898
AcsI	RAATTY	3 cut(s)	390, 402, 912
AfaI	GTAC	1 cut(s)	564
AflIII	ACRYGT	1 cut(s)	320
AgsI	TTSAA	8 cut(s)	34, 63, 107, 135, 204, 310, 330, 390
AjnI	CCWGG	1 cut(s)	864
AluBI	AGCT	6 cut(s)	30, 116, 161, 170, 437, 701
AluI	AGCT	6 cut(s)	30, 116, 161, 170, 437, 701
Alw26I	GTCTC	3 cut(s)	288, 612, 865
Ama87I	CYCGRG	1 cut(s)	731
ApeKI	GCWGC	4 cut(s)	355, 747, 756, 838
ApoI	RAATTY	3 cut(s)	390, 402, 912
Asp700I	GAANNNNTTC	1 cut(s)	879
AspLEI	GCGC	2 cut(s)	304, 306
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	5 cut(s)	36, 283, 499, 769, 949
AsuII	TTCGAA	1 cut(s)	400
AvaI	CYCGRG	1 cut(s)	731
AvaII	GGWCC	1 cut(s)	139
BbvCI	CCTCAGC	2 cut(s)	250, 281
BbvI	GCAGC	4 cut(s)	342, 743, 759, 850
BccI	CCATC	1 cut(s)	654
BciT130I	CCWGG	1 cut(s)	866
BcoDI	GTCTC	3 cut(s)	288, 612, 865
BfaI	CTAG	1 cut(s)	856
BisI	GCNGC	4 cut(s)	356, 748, 757, 839
BlsI	GCNGC	4 cut(s)	357, 749, 758, 840
Bme1390I	CCNGG	1 cut(s)	866
Bme18I	GGWCC	1 cut(s)	139
BmeT110I	CYCGRG	1 cut(s)	731
BmgT120I	GGNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	866
BmrI	ACTGGG	1 cut(s)	775
BmsI	GCATC	3 cut(s)	585, 797, 859
BmuI	ACTGGG	1 cut(s)	775
BpmI	CTGGAG	1 cut(s)	647
Bpu10I	CCTNAGC	3 cut(s)	162, 250, 281
Bpu14I	TTCGAA	1 cut(s)	400
BsaI	GGTCTC	1 cut(s)	865
BsaJI	CCNNGG	4 cut(s)	7, 730, 842, 864
Bse1I	ACTGG	3 cut(s)	129, 630, 781
Bse3DI	GCAATG	3 cut(s)	26, 367, 600
BseBI	CCWGG	1 cut(s)	866
BseDI	CCNNGG	4 cut(s)	7, 730, 842, 864
BseGI	GGATG	2 cut(s)	576, 874
BseMI	GCAATG	3 cut(s)	26, 367, 600
BseMII	CTCAG	3 cut(s)	168, 264, 295
BseNI	ACTGG	3 cut(s)	129, 630, 781
BsePI	GCGCGC	1 cut(s)	302
BseRI	GAGGAG	1 cut(s)	904
BseXI	GCAGC	4 cut(s)	342, 743, 759, 850
Bsh1236I	CGCG	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	731
BsiSI	CCGG	1 cut(s)	742
BsmAI	GTCTC	3 cut(s)	288, 612, 865
BsmI	GAATGC	1 cut(s)	210
Bso31I	GGTCTC	1 cut(s)	865
BsoBI	CYCGRG	1 cut(s)	731
Bsp119I	TTCGAA	1 cut(s)	400
Bsp143I	GATC	2 cut(s)	150, 774
BspACI	CCGC	1 cut(s)	898
BspCNI	CTCAG	3 cut(s)	167, 263, 294
BspFNI	CGCG	1 cut(s)	304
BspT104I	TTCGAA	1 cut(s)	400
BspTNI	GGTCTC	1 cut(s)	865
BsrDI	GCAATG	3 cut(s)	26, 367, 600
BsrI	ACTGG	3 cut(s)	129, 630, 781
BssECI	CCNNGG	4 cut(s)	7, 730, 842, 864
BssHII	GCGCGC	1 cut(s)	302
BssMI	GATC	2 cut(s)	150, 774
BssT1I	CCWWGG	1 cut(s)	842
Bst2UI	CCWGG	1 cut(s)	866
Bst4CI	ACNGT	3 cut(s)	72, 233, 584
BstAPI	GCANNNNNTGC	2 cut(s)	753, 756
BstBI	TTCGAA	1 cut(s)	400
BstC8I	GCNNGC	4 cut(s)	245, 304, 849, 853
BstDEI	CTNAG	6 cut(s)	112, 154, 162, 250, 281, 298
BstF5I	GGATG	2 cut(s)	576, 874
BstFNI	CGCG	1 cut(s)	304
BstHHI	GCGC	2 cut(s)	304, 306
BstKTI	GATC	2 cut(s)	153, 777
BstMAI	GTCTC	3 cut(s)	288, 612, 865
BstMBI	GATC	2 cut(s)	150, 774
BstMWI	GCNNNNNNNGC	9 cut(s)	167, 222, 434, 684, 747, 753, 756, 762, 844
BstNI	CCWGG	1 cut(s)	866
BstNSI	RCATGY	2 cut(s)	324, 855
BstSCI	CCNGG	1 cut(s)	864
BstUI	CGCG	1 cut(s)	304
BstV1I	GCAGC	4 cut(s)	342, 743, 759, 850
BtsCI	GGATG	2 cut(s)	576, 874
BtsIMutI	CAGTG	1 cut(s)	68
Cac8I	GCNNGC	4 cut(s)	245, 304, 849, 853
CfoI	GCGC	2 cut(s)	304, 306
Cfr13I	GGNCC	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	563
CviAII	CATG	2 cut(s)	321, 852
CviQI	GTAC	1 cut(s)	563
DdeI	CTNAG	6 cut(s)	112, 154, 162, 250, 281, 298
DpnI	GATC	2 cut(s)	152, 776
DpnII	GATC	2 cut(s)	150, 774
EciI	GGCGGA	1 cut(s)	913
Eco130I	CCWWGG	1 cut(s)	842
Eco31I	GGTCTC	1 cut(s)	865
Eco32I	GATATC	1 cut(s)	724
Eco47I	GGWCC	1 cut(s)	139
Eco88I	CYCGRG	1 cut(s)	731
EcoRII	CCWGG	1 cut(s)	864
EcoRV	GATATC	1 cut(s)	724
EcoT14I	CCWWGG	1 cut(s)	842
ErhI	CCWWGG	1 cut(s)	842
FaeI	CATG	2 cut(s)	324, 855
FaiI	YATR	7 cut(s)	322, 466, 588, 761, 853, 948, 960
FatI	CATG	2 cut(s)	320, 851
Fnu4HI	GCNGC	4 cut(s)	356, 748, 757, 839
FokI	GGATG	2 cut(s)	563, 881
Fsp4HI	GCNGC	4 cut(s)	356, 748, 757, 839
FspBI	CTAG	1 cut(s)	856
GlaI	GCGC	2 cut(s)	303, 305
GluI	GCNGC	4 cut(s)	356, 748, 757, 839
GsuI	CTGGAG	1 cut(s)	647
HapII	CCGG	1 cut(s)	742
HhaI	GCGC	2 cut(s)	304, 306
Hin1II	CATG	2 cut(s)	324, 855
Hin6I	GCGC	2 cut(s)	302, 304
HinP1I	GCGC	2 cut(s)	302, 304
HindIII	AAGCTT	2 cut(s)	28, 114
HinfI	GANTC	2 cut(s)	276, 644
HpaII	CCGG	1 cut(s)	742
HphI	GGTGA	5 cut(s)	36, 283, 499, 769, 949
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	3 cut(s)	11, 293, 425
Hpy188III	TCNNGA	2 cut(s)	60, 518
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	4 cut(s)	273, 506, 934, 948
HpyCH4III	ACNGT	3 cut(s)	72, 233, 584
HpyCH4V	TGCA	5 cut(s)	19, 358, 593, 759, 820
HpyF10VI	GCNNNNNNNGC	9 cut(s)	167, 222, 434, 684, 747, 753, 756, 762, 844
HpyF3I	CTNAG	6 cut(s)	112, 154, 162, 250, 281, 298
Hsp92II	CATG	2 cut(s)	324, 855
HspAI	GCGC	2 cut(s)	302, 304
Kzo9I	GATC	2 cut(s)	150, 774
LmnI	GCTCC	1 cut(s)	744
Lsp1109I	GCAGC	4 cut(s)	342, 743, 759, 850
LweI	GCATC	3 cut(s)	585, 797, 859
MaeI	CTAG	1 cut(s)	856
MaeIII	GTNAC	1 cut(s)	487
MalI	GATC	2 cut(s)	152, 776
MboI	GATC	2 cut(s)	150, 774
MboII	GAAGA	1 cut(s)	731
MfeI	CAATTG	1 cut(s)	78
MluCI	AATT	6 cut(s)	78, 258, 390, 402, 546, 912
MmeI	TCCRAC	1 cut(s)	645
MnlI	CCTC	8 cut(s)	17, 228, 259, 290, 359, 622, 740, 882
MroXI	GAANNNNTTC	1 cut(s)	879
MseI	TTAA	4 cut(s)	409, 433, 446, 533
MslI	CAYNNNNRTG	1 cut(s)	805
MspI	CCGG	1 cut(s)	742
MspR9I	CCNGG	1 cut(s)	866
MunI	CAATTG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	866
MvnI	CGCG	1 cut(s)	304
MwoI	GCNNNNNNNGC	9 cut(s)	167, 222, 434, 684, 747, 753, 756, 762, 844
NdeII	GATC	2 cut(s)	150, 774
NlaIII	CATG	2 cut(s)	324, 855
NmuCI	GTSAC	1 cut(s)	487
NspI	RCATGY	2 cut(s)	324, 855
NspV	TTCGAA	1 cut(s)	400
PaeI	GCATGC	1 cut(s)	855
PauI	GCGCGC	1 cut(s)	302
PciI	ACATGT	1 cut(s)	320
PctI	GAATGC	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	879
PfeI	GAWTC	2 cut(s)	276, 644
PkrI	GCNGC	4 cut(s)	357, 749, 758, 840
PscI	ACATGT	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	864
PspGI	CCWGG	1 cut(s)	864
PspPI	GGNCC	1 cut(s)	139
PteI	GCGCGC	1 cut(s)	302
RsaI	GTAC	1 cut(s)	564
RsaNI	GTAC	1 cut(s)	563
RseI	CAYNNNNRTG	1 cut(s)	805
SaqAI	TTAA	4 cut(s)	409, 433, 446, 533
SatI	GCNGC	4 cut(s)	356, 748, 757, 839
Sau3AI	GATC	2 cut(s)	150, 774
Sau96I	GGNCC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	866
SfaNI	GCATC	3 cut(s)	585, 797, 859
SfuI	TTCGAA	1 cut(s)	400
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	805
SphI	GCATGC	1 cut(s)	855
Sse9I	AATT	6 cut(s)	78, 258, 390, 402, 546, 912
SsiI	CCGC	1 cut(s)	898
SspMI	CTAG	1 cut(s)	856
StyD4I	CCNGG	1 cut(s)	864
StyI	CCWWGG	1 cut(s)	842
TaaI	ACNGT	3 cut(s)	72, 233, 584
TaqI	TCGA	2 cut(s)	400, 469
TasI	AATT	6 cut(s)	78, 258, 390, 402, 546, 912
TfiI	GAWTC	2 cut(s)	276, 644
Tru1I	TTAA	4 cut(s)	409, 433, 446, 533
Tru9I	TTAA	4 cut(s)	409, 433, 446, 533
TscAI	CASTG	1 cut(s)	75
TseFI	GTSAC	1 cut(s)	487
TseI	GCWGC	4 cut(s)	355, 747, 756, 838
Tsp45I	GTSAC	1 cut(s)	487
TspDTI	ATGAA	2 cut(s)	872, 935
TspRI	CASTG	1 cut(s)	75
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	3 cut(s)	390, 402, 912
XceI	RCATGY	2 cut(s)	324, 855
XmnI	GAANNNNTTC	1 cut(s)	879
XspI	CTAG	1 cut(s)	856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.